mRNA_H-elongata_contig120638.1582.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120638.1582.1
Unique NamemRNA_H-elongata_contig120638.1582.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120638.1582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120638contigH-elongata_contig120638:2..1238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size758
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929707.6756296-CDS-H-elongata_contig120638:3..3481622929707.6756296-CDS-H-elongata_contig120638:3..348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120638 4..348 -
1691679127.0119317-CDS-H-elongata_contig120638:3..3481691679127.0119317-CDS-H-elongata_contig120638:3..348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120638 4..348 -
1622929707.7402356-CDS-H-elongata_contig120638:827..12381622929707.7402356-CDS-H-elongata_contig120638:827..1238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120638 828..1238 -
1691679127.020779-CDS-H-elongata_contig120638:827..12381691679127.020779-CDS-H-elongata_contig120638:827..1238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120638 828..1238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120638.1582.1prot_H-elongata_contig120638.1582.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120638 4..1238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120638.1582.1

>prot_H-elongata_contig120638.1582.1 ID=prot_H-elongata_contig120638.1582.1|Name=mRNA_H-elongata_contig120638.1582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
SISNSLGGRHLGVVSVCRDPGSAGDEYRGRALSQPLPLPPFPTKTVGGAR
TQAAGVAATGASGSALRAQGIPTNSNASAGRRPSPGVEPRRNSTPSPPAS
LLPGAAAAEAVSSVQRSSLQKSAHSASLPVSSSKQYNGSTSSSPTRRNLQ
QEHPQAHPRTHLNYSLERERQTQPIAPQLQQQHQQQQQRHNLHSRLHQQS
ETQDSLGPLSWSSSPDVAPPPAAAAPPGEDVAAVAGGERRHDASSWGSSP
SS
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mRNA from alignment at H-elongata_contig120638:2..1238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120638.1582.1 ID=mRNA_H-elongata_contig120638.1582.1|Name=mRNA_H-elongata_contig120638.1582.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1237bp|location=Sequence derived from alignment at H-elongata_contig120638:2..1238- (Himanthalia elongata Himel1 dioecious)
AGCATCAGCAACTCGCTCGGCGGTCGCCACCTCGGCGTTGTATCAGTTTG
CCGTGATCCTGGTAGTGCGGGCGATGAGTACCGCGGGAGAGCGTTATCTC
AACCGCTTCCGTTGCCGCCTTTTCCCACGAAAACTGTCGGAGGCGCCAGG
ACGCAAGCAGCGGGGGTGGCCGCGACTGGGGCAAGTGGTTCGGCGTTGCG
GGCACAAGGCATACCCACGAATTCGAATGCCTCGGCCGGCCGAAGGCCGT
CACCAGGAGTGGAACCGCGGAGGAACTCGACACCTTCCCCTCCTGCTTCG
CTACTCCCAGGGGCGGCCGCGGCCGAAGCAGTCTCTTCAGTGCAGCGTTC
ATCACTGCAGAAAAGCGCGCATTCGGCCAGCCTCCCCGTCTCGTCTTCCA
AGCAATACAACGTGAGTGCCAGGAACGTTAGCCAGCCATCCCTGCGGCCT
TTTGTGTGTCGCATAGACTTGTCTTTGTGCGTTCCGAGAGTCTTCCGTTT
TGGTTGATGGATTCATTATTACCGTAGTGTGTTATCGCTTACTAGCTTAC
TATAGGAACTCCCTCGCCCCCATCATACCCACATATGGTAACCATGATTC
GATTGCCACGGCGATCGATGAATGAGACGGCTTCGTCCGCACGCACAGCC
AAATCGCTTCCCTCATGCGCCCTGGTGCCCCGCCCGAAGGCTGCAAGCTC
CATCCGTGCGAGAAACTCACGAAATAAGTACGGTTTATAGTACAGTACAG
TACTTCGAAAAAGTTGACTCCTCGTGGCAAACGAAAGGCCTTTGCCACGC
CCCGCCTCTCCCTCCACGACTTTGGCGTATGTGACCATTTTTATTTTATT
TTATTTTTTTTGAAAAAATTATATCGTGGCCGCGTCACAGGGTTCGACTT
CTTCATCCCCGACCAGGCGGAATTTACAGCAAGAACACCCGCAGGCGCAC
CCGCGAACCCACCTCAACTACTCCTTGGAACGAGAGAGACAAACGCAGCC
GATCGCGCCGCAGCTGCAGCAACAACATCAACAGCAGCAGCAGCGACATA
ACTTGCACTCCCGCCTCCACCAGCAAAGCGAGACGCAGGACTCCCTGGGA
CCTCTCTCGTGGAGTTCCTCCCCCGATGTTGCCCCCCCCCCCGCCGCCGC
CGCGCCTCCGGGAGAAGATGTGGCCGCAGTGGCCGGTGGAGAGCGGCGGC
ACGATGCAAGCTCGTGGGGTAGCTCTCCTTCGTCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig120638:2..1238-

>mRNA_H-elongata_contig120638.1582.1 ID=mRNA_H-elongata_contig120638.1582.1|Name=mRNA_H-elongata_contig120638.1582.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig120638:2..1238- (Himanthalia elongata Himel1 dioecious)
AGCATCAGCAACTCGCTCGGCGGTCGCCACCTCGGCGTTGTATCAGTTTG
CCGTGATCCTGGTAGTGCGGGCGATGAGTACCGCGGGAGAGCGTTATCTC
AACCGCTTCCGTTGCCGCCTTTTCCCACGAAAACTGTCGGAGGCGCCAGG
ACGCAAGCAGCGGGGGTGGCCGCGACTGGGGCAAGTGGTTCGGCGTTGCG
GGCACAAGGCATACCCACGAATTCGAATGCCTCGGCCGGCCGAAGGCCGT
CACCAGGAGTGGAACCGCGGAGGAACTCGACACCTTCCCCTCCTGCTTCG
CTACTCCCAGGGGCGGCCGCGGCCGAAGCAGTCTCTTCAGTGCAGCGTTC
ATCACTGCAGAAAAGCGCGCATTCGGCCAGCCTCCCCGTCTCGTCTTCCA
AGCAATACAACAGCATCAGCAACTCGCTCGGCGGTCGCCACCTCGGCGTT
GTATCAGTTTGCCGTGATCCTGGTAGTGCGGGCGATGAGTACCGCGGGAG
AGCGTTATCTCAACCGCTTCCGTTGCCGCCTTTTCCCACGAAAACTGTCG
GAGGCGCCAGGACGCAAGCAGCGGGGGTGGCCGCGACTGGGGCAAGTGGT
TCGGCGTTGCGGGCACAAGGCATACCCACGAATTCGAATGCCTCGGCCGG
CCGAAGGCCGTCACCAGGAGTGGAACCGCGGAGGAACTCGACACCTTCCC
CTCCTGCTTCGCTACTCCCAGGGGCGGCCGCGGCCGAAGCAGTCTCTTCA
GTGCAGCGTTCATCACTGCAGAAAAGCGCGCATTCGGCCAGCCTCCCCGT
CTCGTCTTCCAAGCAATACAACGGTTCGACTTCTTCATCCCCGACCAGGC
GGAATTTACAGCAAGAACACCCGCAGGCGCACCCGCGAACCCACCTCAAC
TACTCCTTGGAACGAGAGAGACAAACGCAGCCGATCGCGCCGCAGCTGCA
GCAACAACATCAACAGCAGCAGCAGCGACATAACTTGCACTCCCGCCTCC
ACCAGCAAAGCGAGACGCAGGACTCCCTGGGACCTCTCTCGTGGAGTTCC
TCCCCCGATGTTGCCCCCCCCCCCGCCGCCGCCGCGCCTCCGGGAGAAGA
TGTGGCCGCAGTGGCCGGTGGAGAGCGGCGGCACGATGCAAGCTCGTGGG
GTAGCTCTCCTTCGTCGGGTTCGACTTCTTCATCCCCGACCAGGCGGAAT
TTACAGCAAGAACACCCGCAGGCGCACCCGCGAACCCACCTCAACTACTC
CTTGGAACGAGAGAGACAAACGCAGCCGATCGCGCCGCAGCTGCAGCAAC
AACATCAACAGCAGCAGCAGCGACATAACTTGCACTCCCGCCTCCACCAG
CAAAGCGAGACGCAGGACTCCCTGGGACCTCTCTCGTGGAGTTCCTCCCC
CGATGTTGCCCCCCCCCCCGCCGCCGCCGCGCCTCCGGGAGAAGATGTGG
CCGCAGTGGCCGGTGGAGAGCGGCGGCACGATGCAAGCTCGTGGGGTAGC
TCTCCTTCGTCG
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