mRNA_H-elongata_contig120508.1574.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120508.1574.1
Unique NamemRNA_H-elongata_contig120508.1574.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 8.090e-18
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    4 PLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNILSPEHVQLLVFVR 189
            PL WW++K ++YP LA+LARRVL IPA QAQSER+FSSAGL+V+K    + PE+V L+VF+R
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLR 541          
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 9.700e-18
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    1 NPLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNILSPEHVQLLVFVR 189
            +PL WW+++  D+P LANLARRVLAIPA+QA+SERLFS AG IV+K  N L+P  V+LLV +R
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLR 284          
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Match: A0A1A8CIX7_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CIX7_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 3.650e-16
Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 NPLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNILSPEHVQLLVFVR 189
            +PL WWK+    YP+LA+LA+  L IPA+   SER+FS+AG IVS + ++++PEHV +LVF++
Sbjct:   22 SPLEWWKVNAYAYPILASLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLK 84          
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Match: A0A1A7ZCN3_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZCN3_NOTFU)

HSP 1 Score: 74.7 bits (182), Expect = 4.870e-16
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 NPLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNILSPEHVQLLVF 183
            NPL WWK     +P LA+LA+  L +PA+   SERLFSSAG IVSK+   LSPEH+ +L F
Sbjct:   32 NPLQWWKSNEARFPSLASLAKSYLCVPATSTPSERLFSSAGNIVSKKRTSLSPEHIDMLTF 92          
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Match: A0A1A8M216_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8M216_9TELE)

HSP 1 Score: 75.1 bits (183), Expect = 1.130e-15
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 NPLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNILSPEHVQLLVFV 186
            +PL+WWK   + +P LA LA  +L IPA+   SERLFS+AG IVSK+   LSPEHV +L F+
Sbjct:   78 DPLIWWKANEQRFPTLAKLANSLLCIPATSTPSERLFSAAGNIVSKKRASLSPEHVDMLTFL 139          
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Match: A0A1A8S6F3_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8S6F3_9TELE)

HSP 1 Score: 72.0 bits (175), Expect = 4.240e-15
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 NPLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNILSPEHVQLLVFV 186
            +PL+WWK   + +  LA LA  +L IPA+   SERLFS+AG IVSK+   LSPEHV +L F+
Sbjct:   19 DPLIWWKANEQRFTTLAKLANSLLCIPATSTPSERLFSAAGNIVSKKRASLSPEHVDMLTFL 80          
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Match: A0A3N0Y7A2_ANAGA (Zinc finger BED domain-containing protein 1 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0Y7A2_ANAGA)

HSP 1 Score: 76.3 bits (186), Expect = 5.200e-15
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 NPLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNILSPEHVQLLVFV 186
            NPL+WWK  N  YP+LA LA+  L IPA+   SERLFS+AG I SK+   LS EHV +L F+
Sbjct:  232 NPLLWWKANNDRYPMLARLAKSYLCIPATSTPSERLFSAAGNIASKKRATLSQEHVDMLTFL 293          
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Match: A0A1A8KW61_NOTKU (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kuhntae TaxID=321403 RepID=A0A1A8KW61_NOTKU)

HSP 1 Score: 72.8 bits (177), Expect = 5.930e-15
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 NPLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNILSPEHVQLLVFVR 189
            NPLVWW+   K+YPLLA +A+R L +P +   SER+FS+AG I++ + + L+P HV  L+F++
Sbjct:   60 NPLVWWRENEKEYPLLARMAKRYLCVPETSVASERVFSTAGDIITAKRSCLTPGHVNQLLFLQ 122          
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 7.640e-15
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 NPLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNILSPEHVQLLVFVR 189
            NPL  W+ K  +YPLLA LARRVLAIP+SQAQSER+FS+AGL V+   + L  E+V+LLV++R
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLR 544          
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Match: UPI00165BA612 (zinc finger BED domain-containing protein 1 isoform X1 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165BA612)

HSP 1 Score: 76.6 bits (187), Expect = 7.710e-15
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 NPLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNILSPEHVQLLVFV 186
            NPL+WWK  N+ YP+LA LA+  L IPA+   SERLFS+AG I SK+   LS EHV +L F+
Sbjct:  494 NPLLWWKANNERYPMLARLAKSFLCIPATSTPSERLFSAAGNIASKKRASLSQEHVDMLTFL 555          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120508.1574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE8.090e-1862.90Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JWI1_9PHAE9.700e-1863.49Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A1A8CIX7_9TELE3.650e-1650.79Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A1A7ZCN3_NOTFU4.870e-1655.74Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A1A8M216_9TELE1.130e-1554.84Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A1A8S6F3_9TELE4.240e-1553.23Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A3N0Y7A2_ANAGA5.200e-1556.45Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A1A8KW61_NOTKU5.930e-1547.62Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
D8LCS5_ECTSI7.640e-1561.90Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
UPI00165BA6127.710e-1556.45zinc finger BED domain-containing protein 1 isofor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120508contigH-elongata_contig120508:471..659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.475717-CDS-H-elongata_contig120508:470..6591622929706.475717-CDS-H-elongata_contig120508:470..659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120508 471..659 -
1691679126.3659804-CDS-H-elongata_contig120508:470..6591691679126.3659804-CDS-H-elongata_contig120508:470..659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120508 471..659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120508.1574.1prot_H-elongata_contig120508.1574.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120508 471..659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120508.1574.1

>prot_H-elongata_contig120508.1574.1 ID=prot_H-elongata_contig120508.1574.1|Name=mRNA_H-elongata_contig120508.1574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
NPLVWWKIKNKDYPLLANLARRVLAIPASQAQSERLFSSAGLIVSKRHNI
LSPEHVQLLVFVR
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mRNA from alignment at H-elongata_contig120508:471..659-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120508.1574.1 ID=mRNA_H-elongata_contig120508.1574.1|Name=mRNA_H-elongata_contig120508.1574.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig120508:471..659- (Himanthalia elongata Himel1 dioecious)
AATCCGCTCGTGTGGTGGAAGATCAAGAACAAAGACTACCCGTTGCTGGC CAACCTGGCTCGCCGTGTGCTCGCCATTCCTGCCTCACAGGCTCAGTCAG AACGCCTTTTTTCGTCAGCCGGATTGATTGTGTCCAAGAGGCACAACATA TTATCGCCTGAACACGTGCAGCTTCTCGTCTTTGTTCGC
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Coding sequence (CDS) from alignment at H-elongata_contig120508:471..659-

>mRNA_H-elongata_contig120508.1574.1 ID=mRNA_H-elongata_contig120508.1574.1|Name=mRNA_H-elongata_contig120508.1574.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig120508:471..659- (Himanthalia elongata Himel1 dioecious)
AATCCGCTCGTGTGGTGGAAGATCAAGAACAAAGACTACCCGTTGCTGGC
CAACCTGGCTCGCCGTGTGCTCGCCATTCCTGCCTCACAGGCTCAGTCAG
AACGCCTTTTTTCGTCAGCCGGATTGATTGTGTCCAAGAGGCACAACATA
TTATCGCCTGAACACGTGCAGCTTCTCGTCTTTGTTCGCAATCCGCTCGT
GTGGTGGAAGATCAAGAACAAAGACTACCCGTTGCTGGCCAACCTGGCTC
GCCGTGTGCTCGCCATTCCTGCCTCACAGGCTCAGTCAGAACGCCTTTTT
TCGTCAGCCGGATTGATTGTGTCCAAGAGGCACAACATATTATCGCCTGA
ACACGTGCAGCTTCTCGTCTTTGTTCGC
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