mRNA_H-elongata_contig120352.1569.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120352.1569.1
Unique NamemRNA_H-elongata_contig120352.1569.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120352.1569.1 vs. uniprot
Match: D7FRF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRF4_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.020e-17
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 MVFAGQDLWRKHPMLTGCYKGAFPGFRIAVGIFAGYCVID 120
            MVF GQD WRKHPMLTGCYK  FPG  IA+G+FAGYCV+D
Sbjct:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLD 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120352.1569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRF4_ECTSI1.020e-1777.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120352contigH-elongata_contig120352:796..915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue9.8e-13
Seed eggNOG ortholog2880.D7FRF4
EggNOG OGs2E7JH@1,2SE52@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_000750.1
Exons1
Model size120
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929705.6507103-CDS-H-elongata_contig120352:795..9151622929705.6507103-CDS-H-elongata_contig120352:795..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120352 796..915 -
1691679125.9889548-CDS-H-elongata_contig120352:795..9151691679125.9889548-CDS-H-elongata_contig120352:795..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120352 796..915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120352.1569.1prot_H-elongata_contig120352.1569.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120352 796..915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120352.1569.1

>prot_H-elongata_contig120352.1569.1 ID=prot_H-elongata_contig120352.1569.1|Name=mRNA_H-elongata_contig120352.1569.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MVFAGQDLWRKHPMLTGCYKGAFPGFRIAVGIFAGYCVID
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mRNA from alignment at H-elongata_contig120352:796..915-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120352.1569.1 ID=mRNA_H-elongata_contig120352.1569.1|Name=mRNA_H-elongata_contig120352.1569.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig120352:796..915- (Himanthalia elongata Himel1 dioecious)
ATGGTTTTTGCTGGGCAAGATTTATGGCGAAAGCACCCAATGCTTACGGG
CTGTTACAAGGGAGCCTTCCCGGGGTTCAGGATCGCAGTAGGCATCTTCG
CGGGCTACTGCGTCATCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig120352:796..915-

>mRNA_H-elongata_contig120352.1569.1 ID=mRNA_H-elongata_contig120352.1569.1|Name=mRNA_H-elongata_contig120352.1569.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig120352:796..915- (Himanthalia elongata Himel1 dioecious)
ATGGTTTTTGCTGGGCAAGATTTATGGCGAAAGCACCCAATGCTTACGGG
CTGTTACAAGGGAGCCTTCCCGGGGTTCAGGATCGCAGTAGGCATCTTCG
CGGGCTACTGCGTCATCGACATGGTTTTTGCTGGGCAAGATTTATGGCGA
AAGCACCCAATGCTTACGGGCTGTTACAAGGGAGCCTTCCCGGGGTTCAG
GATCGCAGTAGGCATCTTCGCGGGCTACTGCGTCATCGAC
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