mRNA_H-elongata_contig120314.1566.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120314.1566.1
Unique NamemRNA_H-elongata_contig120314.1566.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120314.1566.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.180e-31
Identity = 57/90 (63.33%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    7 VSTVCGFCGGLGCHTTINAPSGKAAPVMHSTCLYASHKDARDAAVQLSLKSAREGSDTSPCTNIAMKCIFCFQETYIWKYGMADHVARCH 276
            VSTVCGFCGG+GC +TI+ P G+A P++HSTC  A   DAR  AV L+L SAR  SDTSPCTN+ +KC  C Q+ YIW YGM DHV RCH
Sbjct: 1088 VSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCH 1177
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BLAST of mRNA_H-elongata_contig120314.1566.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 5.520e-7
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:  196 IAMKCIFCFQETYIWKYGMADHVARCHNE 282
            + +KC+FC Q+TYIWKYGM++HV RCH E
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHRE 29
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120314.1566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE2.180e-3163.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
D7FNW9_ECTSI5.520e-765.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120314contigH-elongata_contig120314:112..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929705.382092-CDS-H-elongata_contig120314:111..4021622929705.382092-CDS-H-elongata_contig120314:111..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120314 112..402 +
1691679125.8583162-CDS-H-elongata_contig120314:111..4021691679125.8583162-CDS-H-elongata_contig120314:111..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120314 112..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120314.1566.1prot_H-elongata_contig120314.1566.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120314 112..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120314.1566.1

>prot_H-elongata_contig120314.1566.1 ID=prot_H-elongata_contig120314.1566.1|Name=mRNA_H-elongata_contig120314.1566.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MQVSTVCGFCGGLGCHTTINAPSGKAAPVMHSTCLYASHKDARDAAVQLS
LKSAREGSDTSPCTNIAMKCIFCFQETYIWKYGMADHVARCHNEYTL
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mRNA from alignment at H-elongata_contig120314:112..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120314.1566.1 ID=mRNA_H-elongata_contig120314.1566.1|Name=mRNA_H-elongata_contig120314.1566.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig120314:112..402+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGAGCACTGTATGCGGCTTCTGCGGTGGCCTCGGATGCCACAC
CACAATCAACGCCCCATCCGGCAAGGCTGCGCCCGTCATGCACTCCACAT
GTCTCTATGCTTCTCACAAGGACGCGCGTGATGCGGCTGTCCAACTTAGC
CTGAAAAGTGCGAGGGAAGGCTCGGACACCTCACCGTGCACCAACATCGC
CATGAAGTGCATCTTCTGCTTTCAGGAGACGTACATATGGAAGTATGGTA
TGGCCGACCACGTTGCCAGATGCCACAACGAGTACACACTA
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Coding sequence (CDS) from alignment at H-elongata_contig120314:112..402+

>mRNA_H-elongata_contig120314.1566.1 ID=mRNA_H-elongata_contig120314.1566.1|Name=mRNA_H-elongata_contig120314.1566.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig120314:112..402+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGAGCACTGTATGCGGCTTCTGCGGTGGCCTCGGATGCCACAC
CACAATCAACGCCCCATCCGGCAAGGCTGCGCCCGTCATGCACTCCACAT
GTCTCTATGCTTCTCACAAGGACGCGCGTGATGCGGCTGTCCAACTTAGC
CTGAAAAGTGCGAGGGAAGGCTCGGACACCTCACCGTGCACCAACATCGC
CATGAAGTGCATCTTCTGCTTTCAGGAGACGTACATATGGAAGTATGGTA
TGGCCGACCACGTTGCCAGATGCCACAACGAGTACACACTAATGCAGGTG
AGCACTGTATGCGGCTTCTGCGGTGGCCTCGGATGCCACACCACAATCAA
CGCCCCATCCGGCAAGGCTGCGCCCGTCATGCACTCCACATGTCTCTATG
CTTCTCACAAGGACGCGCGTGATGCGGCTGTCCAACTTAGCCTGAAAAGT
GCGAGGGAAGGCTCGGACACCTCACCGTGCACCAACATCGCCATGAAGTG
CATCTTCTGCTTTCAGGAGACGTACATATGGAAGTATGGTATGGCCGACC
ACGTTGCCAGATGCCACAACGAGTACACACTA
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