mRNA_H-elongata_contig12026.1563.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Match: D7G4V8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V8_ECTSI) HSP 1 Score: 145 bits (366), Expect = 1.310e-36 Identity = 74/102 (72.55%), Postives = 88/102 (86.27%), Query Frame = 1
Query: 1 LPAPVSGMETREFDGGLLVVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNYQNNLINKITNLANLPNLIFLDLYNNLIDTLEGPLSSMSGLRVVM 306
LP P G+E REF GG+L+VR+SE +RS ERL+LHRR L SCP+I+G +RLRLLNYQNNLI KITNLANLPNLIF+DLYNN+IDTLEGPLS+M+ LRV+M
Sbjct: 71 LPGPEGGVEVREFQGGVLLVRRSEDAKKRSPERLNLHRRWLTSCPIIQGDNRLRLLNYQNNLITKITNLANLPNLIFIDLYNNVIDTLEGPLSTMTALRVMM 172
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Match: A0A6H5JFV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV0_9PHAE) HSP 1 Score: 144 bits (364), Expect = 2.440e-36 Identity = 73/102 (71.57%), Postives = 90/102 (88.24%), Query Frame = 1
Query: 1 LPAPVSGMETREFDGGLLVVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNYQNNLINKITNLANLPNLIFLDLYNNLIDTLEGPLSSMSGLRVVM 306
LP P G+E REF GG+L+VR+SE +RS ERL+LHRR+L SCP+I+G +RLRLLNYQNNLI+KITNLANLPNLIF+DLYNN+I+TLEGPLS+M+ LRV+M
Sbjct: 71 LPGPEGGVEVREFHGGVLLVRRSEDAKKRSPERLNLHRRRLTSCPIIQGDNRLRLLNYQNNLISKITNLANLPNLIFIDLYNNVINTLEGPLSTMTALRVMM 172
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Match: A0A4Q3SRM7_9BACT (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4Q3SRM7_9BACT) HSP 1 Score: 92.4 bits (228), Expect = 1.980e-18 Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 52 LVVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNYQNNLINKITNLANLPNLIFLDLYNNLIDTLEGPLSSMSGL 294
LVV ++ E R+ ERL+L RRQL+ CPL+ RLRLLNYQNN I ITNL NLPNLIFLDLYNN I TLEGPL + GL
Sbjct: 170 LVVFRTAEERLRNPERLNLDRRQLEFCPLLEQEQRLRLLNYQNNNIKYITNLENLPNLIFLDLYNNKIITLEGPLCQVRGL 250
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Match: A0A7S2F339_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F339_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.530e-14 Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 55 VVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNYQNNLINKITNLANLPNLIFLDLYNNLIDTLEGPLSSMSGLRVVM 306
VV +S E ERL L RR L CP+++ R+RLLNYQNN I +I L NLPNLIFLDLYNN I+ + LS + LRV+M
Sbjct: 16 VVFRSNSERTNDPERLTLERRGLVCCPVLKLEDRVRLLNYQNNFIERIDALRNLPNLIFLDLYNNCIEEMSDELSFVPTLRVLM 99
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Match: F0YI54_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI54_AURAN) HSP 1 Score: 81.3 bits (199), Expect = 2.590e-14 Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 10 PVSGMETREFDGG--LLVVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNYQNNLINKITNLANLPNLIFLDLYNNLIDTLEGPLSSMSGLRVVM 306
P G+ ++ G LVV +S E + ERL+L RR L CP+++ R+RLLNYQNN I +I +L++LPNLIFLDLYNN I++L L + LRV+M
Sbjct: 292 PSDGVFFAQYKGHPETLVVYRSPEERAANPERLNLDRRHLTVCPILKSEERVRLLNYQNNYIEEIRHLSHLPNLIFLDLYNNCIESLSRDLECVPTLRVLM 392
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Match: A0A1R2CZ17_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CZ17_9CILI) HSP 1 Score: 80.5 bits (197), Expect = 4.440e-14 Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query: 46 GLLVVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNYQNNLINKITNLANLPNLIFLDLYNNLIDTLEG 270
G+LVV +S E + ERL+L RR L PL+ G RLRLLNYQ+NLI+KI NL +LPNLIFLDLYNN I + G
Sbjct: 98 GVLVVYRSPSERNTNPERLNLDRRDLTQMPLLEGEERLRLLNYQHNLISKIENLLSLPNLIFLDLYNNQIREING 172
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Match: A0A8J2SSU8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSU8_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.780e-14 Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 46 GLLVVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNYQNNLINKITNLANLPNLIFLDLYNNLIDTLEGPLSSMSGLRVVM 306
G LVV +S E + ERL+L RR+L CP+++ ++RLLNYQ+N I +I NL +LPNLIFLDLYNN I+ L L + LRV+M
Sbjct: 199 GALVVYRSPEERAANPERLNLDRRRLTVCPILKSEEQVRLLNYQSNYIKEIQNLVHLPNLIFLDLYNNRIENLSHDLGCVPTLRVLM 285
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Match: A0A7S4EZI9_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZI9_CHRCT) HSP 1 Score: 77.0 bits (188), Expect = 6.700e-13 Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 43 GGLLVVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNYQNNLINKITNLANLPNLIFLDLYNNLIDTLEG 270
GG+ V +S E + ERL+L RR L++CP++ G RLRLLNYQNN I+ I+NL NLP+LIFLD+Y+N I + G
Sbjct: 192 GGVPTVLRSTAEKLANPERLNLDRRSLEACPVLEGEERLRLLNYQNNSISSISNLHNLPHLIFLDMYSNQIKEIAG 267
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Match: A0A1R2C674_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C674_9CILI) HSP 1 Score: 76.3 bits (186), Expect = 1.280e-12 Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 46 GLLVVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNYQNNLINKITNLANLPNLIFLDLYNNLI 255
G+LVV + E + ERL+L RR+L PL+ G RLRLLNYQ+N I+KI NL +LPNLIFLDLYNN I
Sbjct: 103 GVLVVYRKPSERNSNPERLNLDRRELTQMPLLEGEERLRLLNYQHNFISKIENLLSLPNLIFLDLYNNQI 172
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Match: A0A7S4N260_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4N260_GUITH) HSP 1 Score: 75.1 bits (183), Expect = 3.340e-12 Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query: 40 DGGLLVVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNYQNNLINKITNLANLPNLIFLD 237
+GG LV+ +S+ E + ERL+L RR+L CP++ G +LRLLNYQNNLI+K+ NL NLPNLIFLD
Sbjct: 210 NGGQLVINRSKEEKFSNPERLNLDRRKLTCCPVLEGEEKLRLLNYQNNLISKVENLDNLPNLIFLD 275 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12026.1563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12026.1563.1 >prot_H-elongata_contig12026.1563.1 ID=prot_H-elongata_contig12026.1563.1|Name=mRNA_H-elongata_contig12026.1563.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp METREFDGGLLVVRKSELEHRRSTERLDLHRRQLKSCPLIRGGSRLRLLNback to top mRNA from alignment at H-elongata_contig12026:1..1898- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12026.1563.1 ID=mRNA_H-elongata_contig12026.1563.1|Name=mRNA_H-elongata_contig12026.1563.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1898bp|location=Sequence derived from alignment at H-elongata_contig12026:1..1898- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12026:1..1898- >mRNA_H-elongata_contig12026.1563.1 ID=mRNA_H-elongata_contig12026.1563.1|Name=mRNA_H-elongata_contig12026.1563.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig12026:1..1898- (Himanthalia elongata Himel1 dioecious)back to top |