mRNA_H-elongata_contig120203.1560.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120203.1560.1
Unique NamemRNA_H-elongata_contig120203.1560.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: D8LCU4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase, family GT54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU4_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 5.300e-45
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVPASAKAGFPEVEWRLKFGKE 309
            P    VEWF GET  + ++KGNR+H+AFR+N+F+HLG VSTLRGK SP YP CFEELT QT+FEVE FDF GCP +D+SPCDVPASAK+GFP++ WR  + +E
Sbjct:  322 PDHLVVEWFAGETPASAEFKGNRQHMAFRFNVFQHLGSVSTLRGKISPDYPKCFEELTIQTLFEVEAFDFKGCPDEDMSPCDVPASAKSGFPKIMWRDLYAEE 424          
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A6H5JEY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 9.060e-45
Identity = 69/103 (66.99%), Postives = 82/103 (79.61%), Query Frame = 1
Query:    1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVPASAKAGFPEVEWRLKFGKE 309
            P    VEWF GET  + ++KGNR+H+AFRYN+F HLG VSTLRGK SP YP CFEELT QT+FEVE FDF GCP DD+SPCDVPASAK+GFP++ WR  + +E
Sbjct:  487 PDHLVVEWFAGETPASAEFKGNRQHMAFRYNVFRHLGSVSTLRGKISPDYPKCFEELTIQTLFEVEAFDFKGCPDDDMSPCDVPASAKSGFPKIMWRDLYAEE 589          
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A7S3H1Q4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H1Q4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.810e-25
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDV 249
            P    VEW+ GET E  KY+G R ++ F+YN+F H+G VSTLR + S SYP C+E L   TVF+VE F+   CP+DDV PC+V
Sbjct:  132 PDHLVVEWYAGETPEAGKYRGKRANIGFKYNLFNHIGVVSTLRSQKSTSYPKCYEPLLEPTVFQVEAFNPRQCPRDDVWPCNV 214          
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A7S3LL88_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LL88_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.540e-22
Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPS--YPSCFEELTTQTVFEVEVFDFNGCPKDD--VSPCDVPASAK 264
            P    VEW+ GET ET  YKGNR ++ FR+NIF H+G VSTLR K   S  YP C+EELT   VF+VE ++   CP DD  + PC   A AK
Sbjct:  268 PDHLVVEWYAGETNETSAYKGNRVNIGFRFNIFNHIGTVSTLRAKEQKSNAYPGCWEELTVPAVFQVEAWNSKDCPDDDDDIWPCTWTAKAK 359          
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A7S1C7T6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7T6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.270e-20
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVPASAKAGFPEVE 285
            P    VEWF GE  +   Y GNRKH+AFRYN+FEH+G  S+LR   +  + +C+EELT  T+F+VE F    C  DD+ PC  P  A    P ++
Sbjct:  214 PDHMLVEWFAGERPQAKAYVGNRKHIAFRYNLFEHIGFHSSLRSTKATRFAACYEELTEPTLFQVEAFKPE-CQHDDIWPC--PPRADPAHPMID 305          
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: F0XWC9_AURAN (NTPase_I-T domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWC9_AURAN)

HSP 1 Score: 92.8 bits (229), Expect = 8.230e-20
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPC 243
            P    VEWF GETEE+  Y+G+R+H+ FR+N F+H+G  STLR + S   P+C+EEL    VF VE +    CP  D +PC
Sbjct: 1023 PDHLVVEWFAGETEESRGYRGDRQHLGFRWNFFDHIGARSTLRAQTSGKMPACYEELLAPVVFPVEAYHPKRCPNHDFTPC 1103          
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A7S2MHH0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHH0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.950e-19
Identity = 44/112 (39.29%), Postives = 57/112 (50.89%), Query Frame = 1
Query:    1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCD----------VPASAKAGFPEVEWRLKFGK 306
            P    VEWF GE  ++ KYK  R H  FRYN+F+HLG+ STLR   +   P C+E LT   +F +E F  N CP DD+ PC           +PA  + G      R+   K
Sbjct:  203 PDHLVVEWFAGEVPQSAKYKQQRGHFGFRYNLFDHLGKKSTLRSHEAKEMPMCYETLTFPILFLIESFKPNECPMDDLWPCPKTPAKPWVDRIPAQYREGLKAKSERMNKKK 314          
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A5A8DR10_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DR10_CAFRO)

HSP 1 Score: 90.9 bits (224), Expect = 3.160e-19
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPC 243
            P    VEWF GE+ E+ +YK +RKH AFR+N+ +H G VS+LRG     +  C+E L T ++FEVE F  + CP +DV PC
Sbjct:  353 PDHLLVEWFAGESPESARYKMDRKHFAFRHNLLQHFGTVSSLRGAKQGRFAGCYEALDTGSLFEVEAFKPDVCPNEDVWPC 433          
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A7S3FZY7_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3FZY7_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 1.140e-18
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVPASAKAGFPEVEWR 291
            P     EW   ET     Y  +R ++ ++YN+F+HLG VS+LR   SPSYP C+++L   T+F  E F FN C  DD++PC      K   P V W+
Sbjct:  311 PDHLMSEWTLKETTRAKSYLKDRTYICYKYNLFDHLGTVSSLRASSSPSYPRCYDKLGEPTLFANEAFKFNKCGHDDITPCQQQGDVK--IPPVMWK 405          
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A2R5GRU3_9STRA (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRU3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.830e-17
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLR-GKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVP 252
            P     EW+ GET E   Y+ +R H AFRYN+FEH+G VSTLR G     +P C+  LT  T+F  E F+   CP  DV PC  P
Sbjct:  420 PDHLTSEWYLGETPEAQAYRKSRTHAAFRYNLFEHIGTVSTLRRGSHKQKFPVCWAPLTAPTIFAREAFNKVECPNADVWPCAPP 504          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LCU4_ECTSI5.300e-4565.05Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglu... [more]
A0A6H5JEY6_9PHAE9.060e-4566.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3H1Q4_9STRA3.810e-2553.01Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3LL88_9STRA1.540e-2252.17Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1C7T6_9STRA7.270e-2045.26Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
F0XWC9_AURAN8.230e-2048.15NTPase_I-T domain-containing protein n=1 Tax=Aureo... [more]
A0A7S2MHH0_9STRA1.950e-1939.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5A8DR10_CAFRO3.160e-1948.15Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S3FZY7_9EUKA1.140e-1840.21Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A2R5GRU3_9STRA9.830e-1747.06Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120203contigH-elongata_contig120203:3..1068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog2880.D8LCU4
EggNOG OGs2CXVF@1,2S024@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size309
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120203.1560.1prot_H-elongata_contig120203.1560.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120203 3..1068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.8822386-CDS-H-elongata_contig120203:2..1191622929704.8822386-CDS-H-elongata_contig120203:2..119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120203 3..119 -
1691679125.673059-CDS-H-elongata_contig120203:2..1191691679125.673059-CDS-H-elongata_contig120203:2..119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120203 3..119 -
1622929704.8976655-CDS-H-elongata_contig120203:535..6801622929704.8976655-CDS-H-elongata_contig120203:535..680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120203 536..680 -
1691679125.6833823-CDS-H-elongata_contig120203:535..6801691679125.6833823-CDS-H-elongata_contig120203:535..680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120203 536..680 -
1622929704.9214587-CDS-H-elongata_contig120203:1021..10681622929704.9214587-CDS-H-elongata_contig120203:1021..1068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120203 1022..1068 -
1691679125.6912973-CDS-H-elongata_contig120203:1021..10681691679125.6912973-CDS-H-elongata_contig120203:1021..1068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120203 1022..1068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120203.1560.1

>prot_H-elongata_contig120203.1560.1 ID=prot_H-elongata_contig120203.1560.1|Name=mRNA_H-elongata_contig120203.1560.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSY
PSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVPASAKAGFPEVEWRLKF
GKE
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mRNA from alignment at H-elongata_contig120203:3..1068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120203.1560.1 ID=mRNA_H-elongata_contig120203.1560.1|Name=mRNA_H-elongata_contig120203.1560.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1066bp|location=Sequence derived from alignment at H-elongata_contig120203:3..1068- (Himanthalia elongata Himel1 dioecious)
CCGGGACGTGCACAGGTGGAGTGGTTCGGCGGGGAGACTGAAGAGACGTG AGTGTCCTCTTAAAATCCCCCATTGCGATACTATAGTTAATATAGTTCAA AGTTGTCGATTGACAAGAGTTGAACCCCTTGACAGGCGCGTCAAGGACAC GTCCCCACACTAAAACTAGTTTATTTTCAAAAATGACGCCTTGACGCACT GTCAAGAACTTGTTGCTATTCACTGGACAAGGGGAAAGCATGAAGGAGTA GGACTTCTAGGGGTGTGACTGATTTACAAATCGAGGATATTGCCACCGCG AAGCAGCAACAGTAACAACATTATACCATGACGAAATTTATCCACCCCCT TGTTTAAAAACGCCCGCCAATACTCGCGAAACCCTCAGGCTGAAGTACAA GGGGAATCGGAAGCACGTCGCTTTCCGCTACAATATATTTGAGCACCTAG GACGCGTCAGCACGCTTCGGGGCAAGCCTTCGCCAAGTTATCCCAGCTGT TTCGAAGAGCTCACAACGCAGACCGTTTTTGAGGTTAGGATTTTTCTTAA TGTCACTCCTCTTTTCTTTTTCTTTTTTCCCATTGTTCATTATTATTATT ATTATTTTCTTTCACTTTTTCACTTTTTTTTCTTTTTTTTTTAATCTACT TTTAAAATTAATTACTTTTCTTGTTGTTTTTCTAATATTTTACAAAGAAT CCGACTTCCTGCCGTTTTTCTACCCTTCCCATCCTAGGCAAACACACGAC ACAATAATTAATTGGCTCCTCGTTCCACTTTTTTTTTTCTCAAAAAAAAA ATCACACTCTGGGGGTCAAGATTCACCTTTACCTGTAGCGCCTAACCCTC CCCCCCCCCCACGCTTATTATTTCTTAATAAATTAATTACCTAACTTGGC TAACCGCTAGCGTTGTTCGACGGCGCGGGTCGGTCACTGGATCTCTCAGG TGGAAGTGTTTGACTTCAACGGGTGTCCGAAAGATGACGTATCGCCTTGC GATGTCCCCGCCAGCGCGAAGGCGGGTTTCCCAGAGGTAGAATGGCGTCT CAAGTTCGGGAAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig120203:3..1068-

>mRNA_H-elongata_contig120203.1560.1 ID=mRNA_H-elongata_contig120203.1560.1|Name=mRNA_H-elongata_contig120203.1560.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig120203:3..1068- (Himanthalia elongata Himel1 dioecious)
CCGGGACGTGCACAGGTGGAGTGGTTCGGCGGGGAGACTGAAGAGACCCG
GGACGTGCACAGGTGGAGTGGTTCGGCGGGGAGACTGAAGAGACGCTGAA
GTACAAGGGGAATCGGAAGCACGTCGCTTTCCGCTACAATATATTTGAGC
ACCTAGGACGCGTCAGCACGCTTCGGGGCAAGCCTTCGCCAAGTTATCCC
AGCTGTTTCGAAGAGCTCACAACGCAGACCGTTTTTGAGGCTGAAGTACA
AGGGGAATCGGAAGCACGTCGCTTTCCGCTACAATATATTTGAGCACCTA
GGACGCGTCAGCACGCTTCGGGGCAAGCCTTCGCCAAGTTATCCCAGCTG
TTTCGAAGAGCTCACAACGCAGACCGTTTTTGAGGTGGAAGTGTTTGACT
TCAACGGGTGTCCGAAAGATGACGTATCGCCTTGCGATGTCCCCGCCAGC
GCGAAGGCGGGTTTCCCAGAGGTAGAATGGCGTCTCAAGTTCGGGAAGGA
GGTGGAAGTGTTTGACTTCAACGGGTGTCCGAAAGATGACGTATCGCCTT
GCGATGTCCCCGCCAGCGCGAAGGCGGGTTTCCCAGAGGTAGAATGGCGT
CTCAAGTTCGGGAAGGAG
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