mRNA_H-elongata_contig120203.1560.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: D8LCU4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase, family GT54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU4_ECTSI) HSP 1 Score: 159 bits (402), Expect = 5.300e-45 Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1
Query: 1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVPASAKAGFPEVEWRLKFGKE 309
P VEWF GET + ++KGNR+H+AFR+N+F+HLG VSTLRGK SP YP CFEELT QT+FEVE FDF GCP +D+SPCDVPASAK+GFP++ WR + +E
Sbjct: 322 PDHLVVEWFAGETPASAEFKGNRQHMAFRFNVFQHLGSVSTLRGKISPDYPKCFEELTIQTLFEVEAFDFKGCPDEDMSPCDVPASAKSGFPKIMWRDLYAEE 424
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A6H5JEY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY6_9PHAE) HSP 1 Score: 161 bits (408), Expect = 9.060e-45 Identity = 69/103 (66.99%), Postives = 82/103 (79.61%), Query Frame = 1
Query: 1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVPASAKAGFPEVEWRLKFGKE 309
P VEWF GET + ++KGNR+H+AFRYN+F HLG VSTLRGK SP YP CFEELT QT+FEVE FDF GCP DD+SPCDVPASAK+GFP++ WR + +E
Sbjct: 487 PDHLVVEWFAGETPASAEFKGNRQHMAFRYNVFRHLGSVSTLRGKISPDYPKCFEELTIQTLFEVEAFDFKGCPDDDMSPCDVPASAKSGFPKIMWRDLYAEE 589
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A7S3H1Q4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H1Q4_9STRA) HSP 1 Score: 103 bits (256), Expect = 3.810e-25 Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDV 249
P VEW+ GET E KY+G R ++ F+YN+F H+G VSTLR + S SYP C+E L TVF+VE F+ CP+DDV PC+V
Sbjct: 132 PDHLVVEWYAGETPEAGKYRGKRANIGFKYNLFNHIGVVSTLRSQKSTSYPKCYEPLLEPTVFQVEAFNPRQCPRDDVWPCNV 214
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A7S3LL88_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LL88_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.540e-22 Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPS--YPSCFEELTTQTVFEVEVFDFNGCPKDD--VSPCDVPASAK 264
P VEW+ GET ET YKGNR ++ FR+NIF H+G VSTLR K S YP C+EELT VF+VE ++ CP DD + PC A AK
Sbjct: 268 PDHLVVEWYAGETNETSAYKGNRVNIGFRFNIFNHIGTVSTLRAKEQKSNAYPGCWEELTVPAVFQVEAWNSKDCPDDDDDIWPCTWTAKAK 359
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A7S1C7T6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7T6_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 7.270e-20 Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 1
Query: 1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVPASAKAGFPEVE 285
P VEWF GE + Y GNRKH+AFRYN+FEH+G S+LR + + +C+EELT T+F+VE F C DD+ PC P A P ++
Sbjct: 214 PDHMLVEWFAGERPQAKAYVGNRKHIAFRYNLFEHIGFHSSLRSTKATRFAACYEELTEPTLFQVEAFKPE-CQHDDIWPC--PPRADPAHPMID 305
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: F0XWC9_AURAN (NTPase_I-T domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWC9_AURAN) HSP 1 Score: 92.8 bits (229), Expect = 8.230e-20 Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPC 243
P VEWF GETEE+ Y+G+R+H+ FR+N F+H+G STLR + S P+C+EEL VF VE + CP D +PC
Sbjct: 1023 PDHLVVEWFAGETEESRGYRGDRQHLGFRWNFFDHIGARSTLRAQTSGKMPACYEELLAPVVFPVEAYHPKRCPNHDFTPC 1103
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A7S2MHH0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHH0_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.950e-19 Identity = 44/112 (39.29%), Postives = 57/112 (50.89%), Query Frame = 1
Query: 1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCD----------VPASAKAGFPEVEWRLKFGK 306
P VEWF GE ++ KYK R H FRYN+F+HLG+ STLR + P C+E LT +F +E F N CP DD+ PC +PA + G R+ K
Sbjct: 203 PDHLVVEWFAGEVPQSAKYKQQRGHFGFRYNLFDHLGKKSTLRSHEAKEMPMCYETLTFPILFLIESFKPNECPMDDLWPCPKTPAKPWVDRIPAQYREGLKAKSERMNKKK 314
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A5A8DR10_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DR10_CAFRO) HSP 1 Score: 90.9 bits (224), Expect = 3.160e-19 Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPC 243
P VEWF GE+ E+ +YK +RKH AFR+N+ +H G VS+LRG + C+E L T ++FEVE F + CP +DV PC
Sbjct: 353 PDHLLVEWFAGESPESARYKMDRKHFAFRHNLLQHFGTVSSLRGAKQGRFAGCYEALDTGSLFEVEAFKPDVCPNEDVWPC 433
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A7S3FZY7_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3FZY7_9EUKA) HSP 1 Score: 89.0 bits (219), Expect = 1.140e-18 Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 1
Query: 1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVPASAKAGFPEVEWR 291
P EW ET Y +R ++ ++YN+F+HLG VS+LR SPSYP C+++L T+F E F FN C DD++PC K P V W+
Sbjct: 311 PDHLMSEWTLKETTRAKSYLKDRTYICYKYNLFDHLGTVSSLRASSSPSYPRCYDKLGEPTLFANEAFKFNKCGHDDITPCQQQGDVK--IPPVMWK 405
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Match: A0A2R5GRU3_9STRA (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRU3_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 9.830e-17 Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 1 PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLR-GKPSPSYPSCFEELTTQTVFEVEVFDFNGCPKDDVSPCDVP 252
P EW+ GET E Y+ +R H AFRYN+FEH+G VSTLR G +P C+ LT T+F E F+ CP DV PC P
Sbjct: 420 PDHLTSEWYLGETPEAQAYRKSRTHAAFRYNLFEHIGTVSTLRRGSHKQKFPVCWAPLTAPTIFAREAFNKVECPNADVWPCAPP 504 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120203.1560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig120203.1560.1 >prot_H-elongata_contig120203.1560.1 ID=prot_H-elongata_contig120203.1560.1|Name=mRNA_H-elongata_contig120203.1560.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp PGRAQVEWFGGETEETLKYKGNRKHVAFRYNIFEHLGRVSTLRGKPSPSYback to top mRNA from alignment at H-elongata_contig120203:3..1068- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig120203.1560.1 ID=mRNA_H-elongata_contig120203.1560.1|Name=mRNA_H-elongata_contig120203.1560.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1066bp|location=Sequence derived from alignment at H-elongata_contig120203:3..1068- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig120203:3..1068- >mRNA_H-elongata_contig120203.1560.1 ID=mRNA_H-elongata_contig120203.1560.1|Name=mRNA_H-elongata_contig120203.1560.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig120203:3..1068- (Himanthalia elongata Himel1 dioecious)back to top |