mRNA_H-elongata_contig120162.1558.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120162.1558.1
Unique NamemRNA_H-elongata_contig120162.1558.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Match: A0A6H5JVZ6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.360e-8
Identity = 29/89 (32.58%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    1 WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQLPIE--GYGDLTVNFRSGQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG 261
            ++ DT ++  +   AD L ++R    +++   G ++P+   GYGD+T+  ++  G V V ++N A+ P   Y+LLSLP++A++GH++ G
Sbjct:  290 YVADTAATCSMFRCADNLVNYRERRGWVKGIGGDKVPVPLLGYGDVTLVLQTEDGGVPVPVLNAAHAPEAPYNLLSLPSLAEEGHTYSG 378
[Close]
BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Match: A0A6H5KGX8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.080e-7
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQLPIE--GYGDLTVNFRSGQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG 261
            ++ DT ++  +   A+   ++R CN ++R   G + P+   GYGD+ V  +S  G V + + N  + P   Y+LLSL T+A++GH + G
Sbjct:  441 YVADTAATCSMFRCANAFVNYRECNGWVRGIGGDKAPVPLLGYGDVVVVLKSEGGWVPLPIPNAVHVPEAPYNLLSLTTLAEEGHKYSG 529
[Close]
BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Match: A0A6H5JEB2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB2_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 7.950e-7
Identity = 28/89 (31.46%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQ--LPIEGYGDLTVNFRSGQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG 261
            ++ DT ++  +   AD   ++R  + + +   G +  LP+ GYGD+T+  ++  G V V ++N A+ P   Y+LLSL ++A++GH++ G
Sbjct:  518 YVADTATTSSMFRCADNFVNYRQRSGWAKGIGGDKAPLPLLGYGDVTLVLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSG 606
[Close]
BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Match: A0A6H5KWN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.660e-6
Identity = 27/89 (30.34%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQLPIE--GYGDLTVNFRSGQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG 261
            ++ DT ++  +   AD   ++R  + +++   G + P+   GYGD+T+  ++  G V V ++N A+ P   Y+LLSL ++A++GH++ G
Sbjct:   42 YVADTAATCSMFRCADNFVNYRERSGWVKGIGGDKAPVPLLGYGDVTLVLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSG 130
[Close]
BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Match: A0A6H5KYD7_9PHAE (CCHC-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.990e-6
Identity = 27/89 (30.34%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQLPIE--GYGDLTVNFRSGQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG 261
            ++ DT ++  +   AD   ++R  + +++   G + P+   GYGD+T+  ++  G V V ++N A+ P   Y+LLSL ++A++GH++ G
Sbjct:  299 YVADTAATCSMFRCADNFVNYRERSGWVKGIGGDKAPVPLLGYGDVTLVLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSG 387
[Close]
BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Match: A0A6H5L3N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.020e-6
Identity = 27/89 (30.34%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQLPIE--GYGDLTVNFRSGQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG 261
            ++ DT ++  +   AD   ++R  + +++   G + P+   GYGD+T+  ++  G V V ++N A+ P   Y+LLSL ++A++GH++ G
Sbjct:  593 YVADTAATCSMFRCADNFVNYRERSGWVKGIGGDKAPVPLLGYGDVTLVLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSG 681
[Close]
BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Match: A0A6H5K462_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K462_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.030e-6
Identity = 27/89 (30.34%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQLPIE--GYGDLTVNFRSGQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG 261
            ++ DT ++  +   AD   ++R  + +++   G + P+   GYGD+T+  ++  G V V ++N A+ P   Y+LLSL ++A++GH++ G
Sbjct:  515 YVADTAATCSMFRCADNFVNYRERSGWVKGIGGDKAPVPLLGYGDVTLVLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSG 603
[Close]
BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Match: A0A6H5KZT6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZT6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.040e-6
Identity = 27/89 (30.34%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQLPIE--GYGDLTVNFRSGQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG 261
            ++ DT ++  +   AD   ++R  + +++   G + P+   GYGD+T+  ++  G V V ++N A+ P   Y+LLSL ++A++GH++ G
Sbjct:  225 YVADTAATCSMFRCADNFVNYRERSGWVKGIGGDKAPVPLLGYGDVTLVLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSG 313
[Close]
BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Match: A0A6H5KZI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.040e-6
Identity = 27/89 (30.34%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQLPIE--GYGDLTVNFRSGQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG 261
            ++ DT ++  +   AD   ++R  + +++   G + P+   GYGD+T+  ++  G V V ++N A+ P   Y+LLSL ++A++GH++ G
Sbjct:  295 YVADTAATCSMFRCADNFVNYRERSGWVKGIGGDKAPVPLLGYGDVTLVLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSG 383
[Close]
BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Match: A0A6H5JPV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.050e-6
Identity = 27/89 (30.34%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQLPIE--GYGDLTVNFRSGQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG 261
            ++ DT ++  +   AD   ++R  + +++   G + P+   GYGD+T+  ++  G V V ++N A+ P   Y+LLSL ++A++GH++ G
Sbjct:  795 YVADTAATCSMFRCADNFVNYRERSGWVKGIGGDKAPVPLLGYGDVTLVLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSG 883
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120162.1558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JVZ6_9PHAE1.360e-832.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGX8_9PHAE3.080e-732.58CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEB2_9PHAE7.950e-731.46CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KWN1_9PHAE1.660e-630.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYD7_9PHAE1.990e-630.34CCHC-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5L3N6_9PHAE2.020e-630.34CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K462_9PHAE2.030e-630.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZT6_9PHAE2.040e-630.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZI6_9PHAE2.040e-630.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JPV6_9PHAE2.050e-630.34Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120162contigH-elongata_contig120162:1343..1603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.7456784-CDS-H-elongata_contig120162:1342..16031622929704.7456784-CDS-H-elongata_contig120162:1342..1603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120162 1343..1603 +
1691679125.6304152-CDS-H-elongata_contig120162:1342..16031691679125.6304152-CDS-H-elongata_contig120162:1342..1603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120162 1343..1603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120162.1558.1prot_H-elongata_contig120162.1558.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120162 1343..1603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120162.1558.1

>prot_H-elongata_contig120162.1558.1 ID=prot_H-elongata_contig120162.1558.1|Name=mRNA_H-elongata_contig120162.1558.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
WIFDTGSSGHVIPNADQLRSFRICNRFLRVANGTQLPIEGYGDLTVNFRS
GQGVVRVELINVAYGPCLSYHLLSLPTVAKQGHSFFG
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mRNA from alignment at H-elongata_contig120162:1343..1603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120162.1558.1 ID=mRNA_H-elongata_contig120162.1558.1|Name=mRNA_H-elongata_contig120162.1558.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig120162:1343..1603+ (Himanthalia elongata Himel1 dioecious)
TGGATCTTCGACACCGGGTCGTCTGGTCATGTGATACCCAACGCTGATCA
ATTGAGGAGTTTTCGCATTTGCAACAGATTTCTGCGTGTAGCGAATGGCA
CGCAACTCCCGATTGAGGGCTACGGCGATCTCACCGTTAACTTCCGATCT
GGCCAAGGCGTTGTGCGTGTAGAGCTGATAAACGTAGCCTACGGACCTTG
CCTTAGCTACCATCTTCTCTCGCTCCCTACTGTCGCAAAGCAAGGTCACT
CCTTCTTTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig120162:1343..1603+

>mRNA_H-elongata_contig120162.1558.1 ID=mRNA_H-elongata_contig120162.1558.1|Name=mRNA_H-elongata_contig120162.1558.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig120162:1343..1603+ (Himanthalia elongata Himel1 dioecious)
TGGATCTTCGACACCGGGTCGTCTGGTCATGTGATACCCAACGCTGATCA
ATTGAGGAGTTTTCGCATTTGCAACAGATTTCTGCGTGTAGCGAATGGCA
CGCAACTCCCGATTGAGGGCTACGGCGATCTCACCGTTAACTTCCGATCT
GGCCAAGGCGTTGTGCGTGTAGAGCTGATAAACGTAGCCTACGGACCTTG
CCTTAGCTACCATCTTCTCTCGCTCCCTACTGTCGCAAAGCAAGGTCACT
CCTTCTTTGGCTGGATCTTCGACACCGGGTCGTCTGGTCATGTGATACCC
AACGCTGATCAATTGAGGAGTTTTCGCATTTGCAACAGATTTCTGCGTGT
AGCGAATGGCACGCAACTCCCGATTGAGGGCTACGGCGATCTCACCGTTA
ACTTCCGATCTGGCCAAGGCGTTGTGCGTGTAGAGCTGATAAACGTAGCC
TACGGACCTTGCCTTAGCTACCATCTTCTCTCGCTCCCTACTGTCGCAAA
GCAAGGTCACTCCTTCTTTGGC
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