mRNA_H-elongata_contig120151.1557.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120151.1557.1
Unique NamemRNA_H-elongata_contig120151.1557.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: A0A6H5KJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD8_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 6.330e-81
Identity = 129/169 (76.33%), Postives = 142/169 (84.02%), Query Frame = 1
Query:   31 QIVSCAADGQVRLTSLSRGTSILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARK-GRTLLRQPGGRSITGMALNPADPNFLFVCGSSPFLDLYDARKISTPTARYCPWSLRSSRGHITGCNANWCGSEVVATYNPMGEVYRFDVKKNAV--VSSNSPW 528
            +IVSCAADGQVRLT+LSR TS L+G+HEGRAHRLAIEPGSPHRFMTCGEDGVVL FDLR+  AR  G TLLRQPGGRSI+GMALNPADPN LFVCG SP+LD++DARK+  P AR+CP S R SR HITG   NWCGSEVVATYNP GEVY FDVKK+A   + SNS W
Sbjct:  251 KIVSCAADGQVRLTNLSRSTSELLGEHEGRAHRLAIEPGSPHRFMTCGEDGVVLSFDLRAPVARNMGSTLLRQPGGRSISGMALNPADPNVLFVCGDSPYLDMFDARKVDVPAARFCPRSRRGSRAHITGVAVNWCGSEVVATYNPSGEVYLFDVKKHASRGMGSNSMW 419          
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: D7FTN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN6_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 8.530e-79
Identity = 124/159 (77.99%), Postives = 136/159 (85.53%), Query Frame = 1
Query:   31 QIVSCAADGQVRLTSLSRGTSILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARK-GRTLLRQPGGRSITGMALNPADPNFLFVCGSSPFLDLYDARKISTPTARYCPWSLRSSRGHITGCNANWCGSEVVATYNPMGEVYRFDVKKNA 504
            +IVSCAADGQVRLT+LSR TS L+G+HEGRAHRLAIEPGSPHRFMTCGEDGVVL FDLR+  AR  G TLLRQPGGRSI+GMALNPADPN LFVCG SP+LD++DARK   P AR+CP S R SR HITG   NWCG+EVVATYNP GEVY FDVKK+A
Sbjct:  253 KIVSCAADGQVRLTNLSRSTSELLGEHEGRAHRLAIEPGSPHRFMTCGEDGVVLSFDLRAPLARNMGATLLRQPGGRSISGMALNPADPNVLFVCGDSPYLDMFDARKADVPAARFCPRSRRGSRAHITGVAVNWCGTEVVATYNPSGEVYLFDVKKHA 411          
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: UPI001C4ECB3C (DDB1- and CUL4-associated factor 8-like isoform X2 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4ECB3C)

HSP 1 Score: 112 bits (279), Expect = 7.270e-26
Identity = 69/169 (40.83%), Postives = 98/169 (57.99%), Query Frame = 1
Query:   34 IVSCAADGQVRLTSL---SRGTSILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARKGRTLL------RQPGGRSITGMALNPADPNFLFVCGSSPFLDLYDARK--------ISTPTARYCPWSLRSSRG-HITGCNANWCGSEVVATYNPMGEVYRF 486
            IV+CAADGQVR   +    +  ++++GKH+GRAH+LAIE GSPH F TCGEDG+V  FDLR+ +A +  T        R  G   +  +A++P +PNF  V GS  +  +YD RK           P   +CP  L S+R   ITG + ++  SE++ +YN  G +Y F
Sbjct:  116 IVTCAADGQVRHAKIPEHGKVETVMLGKHQGRAHKLAIERGSPHIFYTCGEDGLVQHFDLRTGTATELFTCKSFHDKSRLDGIVHLNTIAMDPRNPNFFAVGGSDEYARIYDIRKYKWDGSTDFGQPADSFCPTHLISNREVGITGLSFSY-QSELLVSYND-GHIYLF 282          
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: A0A0Q3FER2_BRADI (Uncharacterized protein n=3 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3FER2_BRADI)

HSP 1 Score: 112 bits (279), Expect = 1.170e-25
Identity = 63/153 (41.18%), Postives = 90/153 (58.82%), Query Frame = 1
Query:   34 IVSCAADGQVRLTSLSRGTSI---LMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARK---GRTLLRQPGGRS---ITGMALNPADPNFLFVCGSSPFLDLYDARKISTPTARYCPWSLRSSRGHITGCNANWCGSEVVATYNP 465
            IV+CAADG+VR+  +  G  +   L+G+H+GRAH+LAIEPGSP+ F +CGEDG+V  FDLR+ +A K    R    +PG  S   +  +A++P +PN L V GS+ F  +YD RK          W   S  GH + C   +C   ++ T +P
Sbjct:  123 IVTCAADGEVRIAKIQDGGDVPTSLLGEHDGRAHKLAIEPGSPYIFYSCGEDGLVQHFDLRTDTATKLFICRNSFTKPGYSSHIHLNAIAMDPRNPNLLGVGGSNSFARVYDIRKYK--------WDGSSDFGHPSDC---YCPPHLINTRSP 264          
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: A0A1R3HLK5_COCAP (Uncharacterized protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3HLK5_COCAP)

HSP 1 Score: 111 bits (278), Expect = 1.200e-25
Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 1
Query:   31 QIVSCAADGQVRLTSLSRGTSIL---MGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARKGRTLL------RQPGGRSITGMALNPADPNFLFVCGSSPFLDLYDARKIS--------TPTARYCPWSL-RSSRGHITGCNANWCGSEVVATYN 462
            +IV+ +ADGQVRL  +     +    +GKHEGR H LA+EPGSPH F +CGEDG+V  FDLRSSSA K    L      RQP   S+  + ++P +PN+  + GS  +  +YD R+          TP   +CP  L  S+  HITG  A    SE++ +YN
Sbjct:   92 RIVTSSADGQVRLGDIFENGLVRTRRLGKHEGRVHDLAVEPGSPHIFYSCGEDGLVQHFDLRSSSATKLFHCLSIKETKRQPSEISLNAIVIDPRNPNYFAIGGSDEYARVYDIRRCQLDASNNSDTPVNVFCPHHLVDSNHVHITGL-AYSSTSELLVSYN 252          
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: UPI001CC80423 (DDB1- and CUL4-associated factor 8-like isoform X2 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC80423)

HSP 1 Score: 111 bits (278), Expect = 1.630e-25
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 1
Query:   34 IVSCAADGQVRLTSL---SRGTSILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARK--GRTLLRQPGGRSITGM---ALNPADPNFLFVCGSSPFLDLYDARK--------ISTPTARYCPWSLRSSR-GHITGCNANWCGSEVVATYNPMGEVYRFD----VKKNAVVSSNS 522
            IVSCAADGQVR T +    +  ++++GKH+GRAH+LAIEPGSPH F TCGEDG V  FDLR+  A +             SI  +   A++P +PNF  V G+  +  LYD RK        I  P   +CP  + S R   ITG + ++  SE++ +YN    +Y F     +  N + SS+S
Sbjct:  116 IVSCAADGQVRHTKILENGKVETVMLGKHQGRAHKLAIEPGSPHIFYTCGEDGFVQHFDLRTGFATELFACKSFHDKSRYSIVHLNTIAIDPRNPNFFAVGGTDEYARLYDIRKYKWDGSTDIGQPADSFCPSHMISDREAVITGLSFSY-QSELLVSYNDE-HIYLFTRDMGLGSNPIASSSS 297          
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: UPI001CC5551F (DDB1- and CUL4-associated factor 8-like isoform X1 n=3 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC5551F)

HSP 1 Score: 111 bits (278), Expect = 1.650e-25
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 1
Query:   34 IVSCAADGQVRLTSL---SRGTSILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARK--GRTLLRQPGGRSITGM---ALNPADPNFLFVCGSSPFLDLYDARK--------ISTPTARYCPWSLRSSR-GHITGCNANWCGSEVVATYNPMGEVYRFD----VKKNAVVSSNS 522
            IVSCAADGQVR T +    +  ++++GKH+GRAH+LAIEPGSPH F TCGEDG V  FDLR+  A +             SI  +   A++P +PNF  V G+  +  LYD RK        I  P   +CP  + S R   ITG + ++  SE++ +YN    +Y F     +  N + SS+S
Sbjct:  116 IVSCAADGQVRHTKILENGKVETVMLGKHQGRAHKLAIEPGSPHIFYTCGEDGFVQHFDLRTGFATELFACKSFHDKSRYSIVHLNTIAIDPRNPNFFAVGGTDEYARLYDIRKYKWDGSTDIGQPADSFCPSHMISDREAVITGLSFSY-QSELLVSYNDE-HIYLFTRDMGLGSNPIASSSS 297          
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: UPI001CC514EE (DDB1- and CUL4-associated factor 8-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC514EE)

HSP 1 Score: 110 bits (276), Expect = 3.230e-25
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 1
Query:   34 IVSCAADGQVRLTS-LSRGT--SILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSA------RKGRTLLRQPGGRSITGMALNPADPNFLFVCGSSPFLDLYDARK--------ISTPTARYCPWSLRSSRG-HITGCNANWCGSEVVATYN 462
            IV+CAADGQVR    L RG   ++++GKH+GRAH+LAIEPGSP+ F TCGEDG+V  FDLR+ +A      +  R   R     ++  +A++P +PNF  V GS  +  +YD RK           P   +CP  L S+R   ITG + ++  SE++ +YN
Sbjct:  116 IVTCAADGQVRHAKILERGKVETVILGKHQGRAHKLAIEPGSPYIFYTCGEDGLVQHFDLRTGNATELFTCKSSREKSRFDRIVNLNTIAVDPRNPNFFAVGGSDEYARIYDIRKYKWDGSTDFGQPADSFCPAHLISNRQVGITGLSFSY-QSELLVSYN 275          
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: UPI000CD9B7BB (DDB1- and CUL4-associated factor 8 isoform X2 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9B7BB)

HSP 1 Score: 110 bits (274), Expect = 5.300e-25
Identity = 63/136 (46.32%), Postives = 77/136 (56.62%), Query Frame = 1
Query:   34 IVSCAADGQVRLTSLSRGTSI---LMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARKGRTLLRQPGGRSITGM------ALNPADPNFLFVCGSSPFLDLYDARK--------ISTPTARYCPWSL 390
            IV+CAADGQVR   +     I   L+GKH+GRAH+LA EPGSPH F TCGEDG+V  FDLRS  A +  T    P  RS  G+      A++P +PN   + GS  +  LYD RK           PT  +CPW L
Sbjct:  121 IVTCAADGQVRHAMIPEHGEIEPKLLGKHQGRAHKLANEPGSPHIFYTCGEDGLVQHFDLRSGDATELFTCQPIPD-RSFVGVVNLNTIAIDPRNPNLFAIAGSDEYTRLYDIRKYKWDGSTPFGKPTDYFCPWPL 255          
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: A0A218XFI2_PUNGR (DDB1- and CUL4-associated factor 8 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218XFI2_PUNGR)

HSP 1 Score: 109 bits (272), Expect = 1.100e-24
Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   34 IVSCAADGQVRLTSLSRGTSI---LMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARKGRTLLRQPGGRS------ITGMALNPADPNFLFVCGSSPFLDLYDARKIST--------PTARYCPWSLRSSRGHITGCNANWCGSEVVATYN 462
            IV+CAADGQVR   +     +   L+ KH+G AH+LAIEPGSPH F +CGEDG+V  FDLR+ +A +  T  +    R       +  +A++P DPN   V GS  +  LYD RK  +        P   +CP  L   R  ITG  A    SE++A+YN
Sbjct:  108 IVTCAADGQVRYAQILESGGVKTTLLAKHQGGAHKLAIEPGSPHVFYSCGEDGLVQHFDLRTKTATELFTCRQIHAKRGYLPIIQLNAIAIDPRDPNLFTVAGSDEYARLYDIRKYQSDRASDFGQPVDYFCPPHLIGDRVGITGL-AYSDHSELLASYN 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJD8_9PHAE6.330e-8176.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN6_ECTSI8.530e-7977.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001C4ECB3C7.270e-2640.83DDB1- and CUL4-associated factor 8-like isoform X2... [more]
A0A0Q3FER2_BRADI1.170e-2541.18Uncharacterized protein n=3 Tax=Brachypodium dista... [more]
A0A1R3HLK5_COCAP1.200e-2541.98Uncharacterized protein n=2 Tax=Corchorus TaxID=93... [more]
UPI001CC804231.630e-2540.22DDB1- and CUL4-associated factor 8-like isoform X2... [more]
UPI001CC5551F1.650e-2540.22DDB1- and CUL4-associated factor 8-like isoform X1... [more]
UPI001CC514EE3.230e-2542.24DDB1- and CUL4-associated factor 8-like n=2 Tax=Pr... [more]
UPI000CD9B7BB5.300e-2546.32DDB1- and CUL4-associated factor 8 isoform X2 n=1 ... [more]
A0A218XFI2_PUNGR1.100e-2441.25DDB1- and CUL4-associated factor 8 n=1 Tax=Punica ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120151contigH-elongata_contig120151:485..1964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue5.3e-66
Seed eggNOG ortholog2880.D7FTN6
Preferred nameDCAF8
KEGG koko:K11795,ko:K11804,ko:K22204
KEGG TC1.A.46.1
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0031461,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0080008,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG1334@1,KOG1334@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-11_001620.1
Exons3
Model size534
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120151.1557.1prot_H-elongata_contig120151.1557.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120151 485..1964 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.6553848-CDS-H-elongata_contig120151:484..6561622929704.6553848-CDS-H-elongata_contig120151:484..656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120151 485..656 +
1691679125.6047137-CDS-H-elongata_contig120151:484..6561691679125.6047137-CDS-H-elongata_contig120151:484..656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120151 485..656 +
1622929704.6731699-CDS-H-elongata_contig120151:999..11981622929704.6731699-CDS-H-elongata_contig120151:999..1198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120151 1000..1198 +
1691679125.614783-CDS-H-elongata_contig120151:999..11981691679125.614783-CDS-H-elongata_contig120151:999..1198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120151 1000..1198 +
1622929704.697821-CDS-H-elongata_contig120151:1801..19641622929704.697821-CDS-H-elongata_contig120151:1801..1964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120151 1802..1964 +
1691679125.6224523-CDS-H-elongata_contig120151:1801..19641691679125.6224523-CDS-H-elongata_contig120151:1801..1964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120151 1802..1964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120151.1557.1

>prot_H-elongata_contig120151.1557.1 ID=prot_H-elongata_contig120151.1557.1|Name=mRNA_H-elongata_contig120151.1557.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
MNSYVFVCAAQIVSCAADGQVRLTSLSRGTSILMGKHEGRAHRLAIEPGS
PHRFMTCGEDGVVLEFDLRSSSARKGRTLLRQPGGRSITGMALNPADPNF
LFVCGSSPFLDLYDARKISTPTARYCPWSLRSSRGHITGCNANWCGSEVV
ATYNPMGEVYRFDVKKNAVVSSNSPWK*
back to top

mRNA from alignment at H-elongata_contig120151:485..1964+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120151.1557.1 ID=mRNA_H-elongata_contig120151.1557.1|Name=mRNA_H-elongata_contig120151.1557.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1480bp|location=Sequence derived from alignment at H-elongata_contig120151:485..1964+ (Himanthalia elongata Himel1 dioecious)
ATGAATAGTTATGTCTTTGTGTGTGCGGCGCAGATCGTTTCGTGTGCCGC GGACGGTCAAGTGCGGCTGACGTCCCTCTCTCGCGGGACGAGTATACTCA TGGGAAAGCACGAGGGCCGAGCCCATCGGCTGGCCATCGAGCCGGGTTCC CCCCACCGATTCATGACGTGCGGTGAGTCGCCAGGTCTCGCTTCGCGGAA AAACGTTGCCGCCGAGGGAAATCAATATGTTCTTCCCGTCCCCCTCCCTG CCTCCCCCTTCCATGTCATGTCGAGACATTTCGTGAACCCTCTCTTGTTT TTTTGACCGCACGACTCGTTTTGCCCGGCTATTGCGCCTGTGTGTGTATA TGCGTGTGCTTGTTTTTTTTTTTTTAGCTTTACTGATTTTGGTTGAATTA TCTCATAAGATGATGCCTCGCCGTCTGCCAACATGATCGAGCCACCCGTC TGTGTTATGTGTATGTCTCTCTATTTCCCCCTCCGCCCCCTCCCCCTCCC CCTCCTTAAAAAAAGGCGAAGACGGAGTGGTGCTGGAGTTCGACCTCCGA AGTAGCTCCGCTCGCAAAGGCAGGACCCTGCTCCGGCAGCCCGGGGGCAG AAGCATCACGGGCATGGCCCTCAACCCGGCGGATCCCAACTTCCTGTTCG TGTGCGGCAGCTCGCCGTTTCTCGATCTCTACGACGCCCGCAAGATCAGC ACGCCGACCGCACGGTGAGAGCCTTTTGTTGTCGTGTGGCGTCGACGCAG AGAAAGAGGTGAGTAAGAGAGGTTAGTACGGGGAGAAGAAGTAATGGATG GGCAGACTCTAAAATTCCGAATTATGCACCACAGGCGAGGAGATGGAGGG GGGGGGGCAGCATCTGCAGGTTGGTTTCGGTAACAGTCCCAGTGCGTTTG GTGGCCCTGTAGGGGAAAACGTCAGGGCGTGGAAAAAAAACGTTGGCTAC GAGTGAAATTGAGATGCCGGATGCCGGGGCGGGCGTCTTCGTCGTGGTAG GTGATGAACGAAAATGCCGCTATAATGCCGCTATTCATGAATAGCTACCT ACCGTCGTTTCGCCTGATGTTGCCTGCATGCCTGCCTGGCTGCCTGTCAG TCTATTTTTATTTTTATTTTTTTCTTCTTCTTTTTTTGCTTGCCAGCTCC TGTGTTTATTACTCGATATTTCTGAACGCTTTCTGTTTATTATCTTAAAT GTATTCAATGTATTTAACCCCTATGAAACCTCGATCTGTTTTTTACACAT TAAATTCAATATAGTACTTGAAATCGAGTTCCAAAAGGGTTAAACCATAT ATTTCTCTGTTTGCCAGCTACTGTCCGTGGTCCCTTCGGAGCTCGCGCGG TCACATAACGGGATGCAACGCCAACTGGTGCGGATCCGAGGTCGTCGCCA CGTACAACCCCATGGGCGAGGTTTACCGGTTCGACGTTAAGAAAAACGCC GTCGTTTCGTCGAACTCCCCTTGGAAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig120151:485..1964+

>mRNA_H-elongata_contig120151.1557.1 ID=mRNA_H-elongata_contig120151.1557.1|Name=mRNA_H-elongata_contig120151.1557.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig120151:485..1964+ (Himanthalia elongata Himel1 dioecious)
ATGAATAGTTATGTCTTTGTGTGTGCGGCGCAGATCGTTTCGTGTGCCGC
GGACGGTCAAGTGCGGCTGACGTCCCTCTCTCGCGGGACGAGTATACTCA
TGGGAAAGCACGAGGGCCGAGCCCATCGGCTGGCCATCGAGCCGGGTTCC
CCCCACCGATTCATGACGTGCGATGAATAGTTATGTCTTTGTGTGTGCGG
CGCAGATCGTTTCGTGTGCCGCGGACGGTCAAGTGCGGCTGACGTCCCTC
TCTCGCGGGACGAGTATACTCATGGGAAAGCACGAGGGCCGAGCCCATCG
GCTGGCCATCGAGCCGGGTTCCCCCCACCGATTCATGACGTGCGGCGAAG
ACGGAGTGGTGCTGGAGTTCGACCTCCGAAGTAGCTCCGCTCGCAAAGGC
AGGACCCTGCTCCGGCAGCCCGGGGGCAGAAGCATCACGGGCATGGCCCT
CAACCCGGCGGATCCCAACTTCCTGTTCGTGTGCGGCAGCTCGCCGTTTC
TCGATCTCTACGACGCCCGCAAGATCAGCACGCCGACCGCACGGCGAAGA
CGGAGTGGTGCTGGAGTTCGACCTCCGAAGTAGCTCCGCTCGCAAAGGCA
GGACCCTGCTCCGGCAGCCCGGGGGCAGAAGCATCACGGGCATGGCCCTC
AACCCGGCGGATCCCAACTTCCTGTTCGTGTGCGGCAGCTCGCCGTTTCT
CGATCTCTACGACGCCCGCAAGATCAGCACGCCGACCGCACGCTACTGTC
CGTGGTCCCTTCGGAGCTCGCGCGGTCACATAACGGGATGCAACGCCAAC
TGGTGCGGATCCGAGGTCGTCGCCACGTACAACCCCATGGGCGAGGTTTA
CCGGTTCGACGTTAAGAAAAACGCCGTCGTTTCGTCGAACTCCCCTTGGA
AGTGACTACTGTCCGTGGTCCCTTCGGAGCTCGCGCGGTCACATAACGGG
ATGCAACGCCAACTGGTGCGGATCCGAGGTCGTCGCCACGTACAACCCCA
TGGGCGAGGTTTACCGGTTCGACGTTAAGAAAAACGCCGTCGTTTCGTCG
AACTCCCCTTGGAAGTGA
back to top