mRNA_H-elongata_contig120151.1557.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: A0A6H5KJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD8_9PHAE) HSP 1 Score: 265 bits (678), Expect = 6.330e-81 Identity = 129/169 (76.33%), Postives = 142/169 (84.02%), Query Frame = 1
Query: 31 QIVSCAADGQVRLTSLSRGTSILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARK-GRTLLRQPGGRSITGMALNPADPNFLFVCGSSPFLDLYDARKISTPTARYCPWSLRSSRGHITGCNANWCGSEVVATYNPMGEVYRFDVKKNAV--VSSNSPW 528
+IVSCAADGQVRLT+LSR TS L+G+HEGRAHRLAIEPGSPHRFMTCGEDGVVL FDLR+ AR G TLLRQPGGRSI+GMALNPADPN LFVCG SP+LD++DARK+ P AR+CP S R SR HITG NWCGSEVVATYNP GEVY FDVKK+A + SNS W
Sbjct: 251 KIVSCAADGQVRLTNLSRSTSELLGEHEGRAHRLAIEPGSPHRFMTCGEDGVVLSFDLRAPVARNMGSTLLRQPGGRSISGMALNPADPNVLFVCGDSPYLDMFDARKVDVPAARFCPRSRRGSRAHITGVAVNWCGSEVVATYNPSGEVYLFDVKKHASRGMGSNSMW 419
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: D7FTN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN6_ECTSI) HSP 1 Score: 259 bits (662), Expect = 8.530e-79 Identity = 124/159 (77.99%), Postives = 136/159 (85.53%), Query Frame = 1
Query: 31 QIVSCAADGQVRLTSLSRGTSILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARK-GRTLLRQPGGRSITGMALNPADPNFLFVCGSSPFLDLYDARKISTPTARYCPWSLRSSRGHITGCNANWCGSEVVATYNPMGEVYRFDVKKNA 504
+IVSCAADGQVRLT+LSR TS L+G+HEGRAHRLAIEPGSPHRFMTCGEDGVVL FDLR+ AR G TLLRQPGGRSI+GMALNPADPN LFVCG SP+LD++DARK P AR+CP S R SR HITG NWCG+EVVATYNP GEVY FDVKK+A
Sbjct: 253 KIVSCAADGQVRLTNLSRSTSELLGEHEGRAHRLAIEPGSPHRFMTCGEDGVVLSFDLRAPLARNMGATLLRQPGGRSISGMALNPADPNVLFVCGDSPYLDMFDARKADVPAARFCPRSRRGSRAHITGVAVNWCGTEVVATYNPSGEVYLFDVKKHA 411
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: UPI001C4ECB3C (DDB1- and CUL4-associated factor 8-like isoform X2 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4ECB3C) HSP 1 Score: 112 bits (279), Expect = 7.270e-26 Identity = 69/169 (40.83%), Postives = 98/169 (57.99%), Query Frame = 1
Query: 34 IVSCAADGQVRLTSL---SRGTSILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARKGRTLL------RQPGGRSITGMALNPADPNFLFVCGSSPFLDLYDARK--------ISTPTARYCPWSLRSSRG-HITGCNANWCGSEVVATYNPMGEVYRF 486
IV+CAADGQVR + + ++++GKH+GRAH+LAIE GSPH F TCGEDG+V FDLR+ +A + T R G + +A++P +PNF V GS + +YD RK P +CP L S+R ITG + ++ SE++ +YN G +Y F
Sbjct: 116 IVTCAADGQVRHAKIPEHGKVETVMLGKHQGRAHKLAIERGSPHIFYTCGEDGLVQHFDLRTGTATELFTCKSFHDKSRLDGIVHLNTIAMDPRNPNFFAVGGSDEYARIYDIRKYKWDGSTDFGQPADSFCPTHLISNREVGITGLSFSY-QSELLVSYND-GHIYLF 282
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: A0A0Q3FER2_BRADI (Uncharacterized protein n=3 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3FER2_BRADI) HSP 1 Score: 112 bits (279), Expect = 1.170e-25 Identity = 63/153 (41.18%), Postives = 90/153 (58.82%), Query Frame = 1
Query: 34 IVSCAADGQVRLTSLSRGTSI---LMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARK---GRTLLRQPGGRS---ITGMALNPADPNFLFVCGSSPFLDLYDARKISTPTARYCPWSLRSSRGHITGCNANWCGSEVVATYNP 465
IV+CAADG+VR+ + G + L+G+H+GRAH+LAIEPGSP+ F +CGEDG+V FDLR+ +A K R +PG S + +A++P +PN L V GS+ F +YD RK W S GH + C +C ++ T +P
Sbjct: 123 IVTCAADGEVRIAKIQDGGDVPTSLLGEHDGRAHKLAIEPGSPYIFYSCGEDGLVQHFDLRTDTATKLFICRNSFTKPGYSSHIHLNAIAMDPRNPNLLGVGGSNSFARVYDIRKYK--------WDGSSDFGHPSDC---YCPPHLINTRSP 264
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: A0A1R3HLK5_COCAP (Uncharacterized protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3HLK5_COCAP) HSP 1 Score: 111 bits (278), Expect = 1.200e-25 Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 1
Query: 31 QIVSCAADGQVRLTSLSRGTSIL---MGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARKGRTLL------RQPGGRSITGMALNPADPNFLFVCGSSPFLDLYDARKIS--------TPTARYCPWSL-RSSRGHITGCNANWCGSEVVATYN 462
+IV+ +ADGQVRL + + +GKHEGR H LA+EPGSPH F +CGEDG+V FDLRSSSA K L RQP S+ + ++P +PN+ + GS + +YD R+ TP +CP L S+ HITG A SE++ +YN
Sbjct: 92 RIVTSSADGQVRLGDIFENGLVRTRRLGKHEGRVHDLAVEPGSPHIFYSCGEDGLVQHFDLRSSSATKLFHCLSIKETKRQPSEISLNAIVIDPRNPNYFAIGGSDEYARVYDIRRCQLDASNNSDTPVNVFCPHHLVDSNHVHITGL-AYSSTSELLVSYN 252
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: UPI001CC80423 (DDB1- and CUL4-associated factor 8-like isoform X2 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC80423) HSP 1 Score: 111 bits (278), Expect = 1.630e-25 Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 1
Query: 34 IVSCAADGQVRLTSL---SRGTSILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARK--GRTLLRQPGGRSITGM---ALNPADPNFLFVCGSSPFLDLYDARK--------ISTPTARYCPWSLRSSR-GHITGCNANWCGSEVVATYNPMGEVYRFD----VKKNAVVSSNS 522
IVSCAADGQVR T + + ++++GKH+GRAH+LAIEPGSPH F TCGEDG V FDLR+ A + SI + A++P +PNF V G+ + LYD RK I P +CP + S R ITG + ++ SE++ +YN +Y F + N + SS+S
Sbjct: 116 IVSCAADGQVRHTKILENGKVETVMLGKHQGRAHKLAIEPGSPHIFYTCGEDGFVQHFDLRTGFATELFACKSFHDKSRYSIVHLNTIAIDPRNPNFFAVGGTDEYARLYDIRKYKWDGSTDIGQPADSFCPSHMISDREAVITGLSFSY-QSELLVSYNDE-HIYLFTRDMGLGSNPIASSSS 297
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: UPI001CC5551F (DDB1- and CUL4-associated factor 8-like isoform X1 n=3 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC5551F) HSP 1 Score: 111 bits (278), Expect = 1.650e-25 Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 1
Query: 34 IVSCAADGQVRLTSL---SRGTSILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARK--GRTLLRQPGGRSITGM---ALNPADPNFLFVCGSSPFLDLYDARK--------ISTPTARYCPWSLRSSR-GHITGCNANWCGSEVVATYNPMGEVYRFD----VKKNAVVSSNS 522
IVSCAADGQVR T + + ++++GKH+GRAH+LAIEPGSPH F TCGEDG V FDLR+ A + SI + A++P +PNF V G+ + LYD RK I P +CP + S R ITG + ++ SE++ +YN +Y F + N + SS+S
Sbjct: 116 IVSCAADGQVRHTKILENGKVETVMLGKHQGRAHKLAIEPGSPHIFYTCGEDGFVQHFDLRTGFATELFACKSFHDKSRYSIVHLNTIAIDPRNPNFFAVGGTDEYARLYDIRKYKWDGSTDIGQPADSFCPSHMISDREAVITGLSFSY-QSELLVSYNDE-HIYLFTRDMGLGSNPIASSSS 297
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: UPI001CC514EE (DDB1- and CUL4-associated factor 8-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC514EE) HSP 1 Score: 110 bits (276), Expect = 3.230e-25 Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 1
Query: 34 IVSCAADGQVRLTS-LSRGT--SILMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSA------RKGRTLLRQPGGRSITGMALNPADPNFLFVCGSSPFLDLYDARK--------ISTPTARYCPWSLRSSRG-HITGCNANWCGSEVVATYN 462
IV+CAADGQVR L RG ++++GKH+GRAH+LAIEPGSP+ F TCGEDG+V FDLR+ +A + R R ++ +A++P +PNF V GS + +YD RK P +CP L S+R ITG + ++ SE++ +YN
Sbjct: 116 IVTCAADGQVRHAKILERGKVETVILGKHQGRAHKLAIEPGSPYIFYTCGEDGLVQHFDLRTGNATELFTCKSSREKSRFDRIVNLNTIAVDPRNPNFFAVGGSDEYARIYDIRKYKWDGSTDFGQPADSFCPAHLISNRQVGITGLSFSY-QSELLVSYN 275
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: UPI000CD9B7BB (DDB1- and CUL4-associated factor 8 isoform X2 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9B7BB) HSP 1 Score: 110 bits (274), Expect = 5.300e-25 Identity = 63/136 (46.32%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 34 IVSCAADGQVRLTSLSRGTSI---LMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARKGRTLLRQPGGRSITGM------ALNPADPNFLFVCGSSPFLDLYDARK--------ISTPTARYCPWSL 390
IV+CAADGQVR + I L+GKH+GRAH+LA EPGSPH F TCGEDG+V FDLRS A + T P RS G+ A++P +PN + GS + LYD RK PT +CPW L
Sbjct: 121 IVTCAADGQVRHAMIPEHGEIEPKLLGKHQGRAHKLANEPGSPHIFYTCGEDGLVQHFDLRSGDATELFTCQPIPD-RSFVGVVNLNTIAIDPRNPNLFAIAGSDEYTRLYDIRKYKWDGSTPFGKPTDYFCPWPL 255
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Match: A0A218XFI2_PUNGR (DDB1- and CUL4-associated factor 8 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218XFI2_PUNGR) HSP 1 Score: 109 bits (272), Expect = 1.100e-24 Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = 1
Query: 34 IVSCAADGQVRLTSLSRGTSI---LMGKHEGRAHRLAIEPGSPHRFMTCGEDGVVLEFDLRSSSARKGRTLLRQPGGRS------ITGMALNPADPNFLFVCGSSPFLDLYDARKIST--------PTARYCPWSLRSSRGHITGCNANWCGSEVVATYN 462
IV+CAADGQVR + + L+ KH+G AH+LAIEPGSPH F +CGEDG+V FDLR+ +A + T + R + +A++P DPN V GS + LYD RK + P +CP L R ITG A SE++A+YN
Sbjct: 108 IVTCAADGQVRYAQILESGGVKTTLLAKHQGGAHKLAIEPGSPHVFYSCGEDGLVQHFDLRTKTATELFTCRQIHAKRGYLPIIQLNAIAIDPRDPNLFTVAGSDEYARLYDIRKYQSDRASDFGQPVDYFCPPHLIGDRVGITGL-AYSDHSELLASYN 266 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120151.1557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig120151.1557.1 >prot_H-elongata_contig120151.1557.1 ID=prot_H-elongata_contig120151.1557.1|Name=mRNA_H-elongata_contig120151.1557.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp MNSYVFVCAAQIVSCAADGQVRLTSLSRGTSILMGKHEGRAHRLAIEPGSback to top mRNA from alignment at H-elongata_contig120151:485..1964+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig120151.1557.1 ID=mRNA_H-elongata_contig120151.1557.1|Name=mRNA_H-elongata_contig120151.1557.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1480bp|location=Sequence derived from alignment at H-elongata_contig120151:485..1964+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig120151:485..1964+ >mRNA_H-elongata_contig120151.1557.1 ID=mRNA_H-elongata_contig120151.1557.1|Name=mRNA_H-elongata_contig120151.1557.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig120151:485..1964+ (Himanthalia elongata Himel1 dioecious)back to top |