mRNA_H-elongata_contig120150.1556.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120150.1556.1
Unique NamemRNA_H-elongata_contig120150.1556.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Match: A0A6H5KI29_9PHAE (RanBD1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI29_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.670e-25
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDTAKEF 162
            ++ICNHVADPRIVLK NAGSDRSWVWNAFDFT G+LEE TFALRFGNSD+A EF
Sbjct:  128 KVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEMTFALRFGNSDSANEF 181
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BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Match: D8LNF2_ECTSI (RanBD1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF2_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 4.400e-24
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDTAKEF 162
            ++ICNHVADPRIVLK NAGSDRSWVWNAFDFT G+LEE TFALRFGNSD+A EF
Sbjct:  305 KVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEMTFALRFGNSDSANEF 358
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BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Match: A0A8J2T1Z3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1Z3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.400e-20
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDTAKEF 162
            +IICNHV DPRI L+ N GSDRSWVW+A+DF+ GELE+T FA+RFGNSD AKE+
Sbjct:  174 KIICNHVVDPRIELEPNVGSDRSWVWSAWDFSSGELEDTIFAIRFGNSDGAKEY 227
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BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Match: A0A7S2XZR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZR9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.630e-20
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDTAKEF 162
            ++ICNHV DPRI +++NAGSDRSWVW+AFDF+ GEL ET FA+RF NSD A++F
Sbjct:  148 KVICNHVVDPRIQMQMNAGSDRSWVWSAFDFSDGELVETVFAIRFANSDIAQDF 201
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BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Match: A0A7S1VE37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE37_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.400e-20
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDTAKEF 162
            ++ICNHV DPRI L+ N GSDRSWVW+AFDF  G+L+ET FA+RF +SD AKEF
Sbjct:  102 KVICNHVLDPRITLEPNVGSDRSWVWSAFDFAEGDLKETVFAIRFSSSDVAKEF 155
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BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Match: B7FP98_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP98_PHATC)

HSP 1 Score: 86.3 bits (212), Expect = 1.640e-19
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDTAKEF 162
            ++I NH  DPR VLK NAG+DRSWVW+AFDF GGEL ET FA+RFG+SD A EF
Sbjct:  113 KVIANHALDPRCVLKPNAGNDRSWVWSAFDFAGGELVETVFAIRFGDSDKALEF 166
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BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Match: A0A1Z5JQI1_FISSO (RanBD1 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQI1_FISSO)

HSP 1 Score: 83.2 bits (204), Expect = 1.730e-19
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDTAKEF 162
            ++I NHV DP+I L+ N GSDRSWVW+AFDF  GEL+ET FA+RFG+SD A EF
Sbjct:    2 KVIANHVVDPKIKLEPNVGSDRSWVWSAFDFAEGELKETIFAIRFGDSDIANEF 55
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BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Match: A0A835YXP9_9STRA (RanBP1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.640e-19
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDTAKEF 162
            +II NHVADPRIVLK N GSDRSWVW A+DF   EL ET FA+RFG+SD A EF
Sbjct:  124 KIIANHVADPRIVLKPNLGSDRSWVWTAYDFVDNELVETVFAIRFGSSDAANEF 177
[Close]
BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Match: A0A7S3Q898_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q898_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.540e-19
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDTAKEF 162
            ++I NH  DPRI+L  NAGSDRSWVW+AFDF  GEL+ET FALRF +S+ A EF
Sbjct:   11 KVITNHALDPRIILNPNAGSDRSWVWSAFDFAEGELKETVFALRFADSEIADEF 64
[Close]
BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Match: A0A1Z5JPA6_FISSO (Ran-binding protein 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPA6_FISSO)

HSP 1 Score: 83.2 bits (204), Expect = 2.130e-18
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDTAKEF 162
            ++I NHV DP+I L+ N GSDRSWVW+AFDF  GEL+ET FA+RFG+SD A EF
Sbjct:  108 KVIANHVVDPKIKLEPNVGSDRSWVWSAFDFAEGELKETIFAIRFGDSDIANEF 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120150.1556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI29_9PHAE1.670e-2585.19RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LNF2_ECTSI4.400e-2485.19RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A8J2T1Z3_9STRA1.400e-2072.22Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2XZR9_9STRA2.630e-2068.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1VE37_9STRA4.400e-2068.52Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
B7FP98_PHATC1.640e-1970.37Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JQI1_FISSO1.730e-1966.67RanBD1 domain-containing protein n=1 Tax=Fistulife... [more]
A0A835YXP9_9STRA2.640e-1972.22RanBP1 domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S3Q898_9STRA7.540e-1966.67Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
A0A1Z5JPA6_FISSO2.130e-1866.67Ran-binding protein 1 n=1 Tax=Fistulifera solaris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120150contigH-elongata_contig120150:1301..1462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue1.7e-20
Seed eggNOG ortholog2880.D8LNF2
KEGG koko:K15304,ko:K20282
KEGG Pathwayko05166,map05166
GOsGO:0000054,GO:0000056,GO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0022613,GO:0030163,GO:0031224,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0033044,GO:0033157,GO:0033365,GO:0033554,GO:0033750,GO:0034504,GO:0034599,GO:0034613,GO:0042221,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0060341,GO:0060968,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090087,GO:0090316,GO:1901181,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1903047,GO:1903506,GO:1903827,GO:1903829,GO:1904951,GO:2000112,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
EggNOG free text desc.3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing
EggNOG OGsCOG5171@1,KOG0864@2759,KOG2207@1,KOG2207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.6076236-CDS-H-elongata_contig120150:1300..14621622929704.6076236-CDS-H-elongata_contig120150:1300..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120150 1301..1462 +
1691679125.5893106-CDS-H-elongata_contig120150:1300..14621691679125.5893106-CDS-H-elongata_contig120150:1300..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120150 1301..1462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120150.1556.1prot_H-elongata_contig120150.1556.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120150 1301..1462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120150.1556.1

>prot_H-elongata_contig120150.1556.1 ID=prot_H-elongata_contig120150.1556.1|Name=mRNA_H-elongata_contig120150.1556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
QIICNHVADPRIVLKLNAGSDRSWVWNAFDFTGGELEETTFALRFGNSDT
AKEF
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mRNA from alignment at H-elongata_contig120150:1301..1462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120150.1556.1 ID=mRNA_H-elongata_contig120150.1556.1|Name=mRNA_H-elongata_contig120150.1556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig120150:1301..1462+ (Himanthalia elongata Himel1 dioecious)
CAGATAATCTGCAACCACGTGGCGGACCCGCGCATCGTCCTGAAACTGAA
CGCTGGGTCGGATCGGTCTTGGGTGTGGAACGCCTTCGACTTCACCGGAG
GAGAGCTGGAGGAGACCACCTTCGCCCTTCGTTTCGGTAACTCCGACACG
GCCAAGGAGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig120150:1301..1462+

>mRNA_H-elongata_contig120150.1556.1 ID=mRNA_H-elongata_contig120150.1556.1|Name=mRNA_H-elongata_contig120150.1556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig120150:1301..1462+ (Himanthalia elongata Himel1 dioecious)
CAGATAATCTGCAACCACGTGGCGGACCCGCGCATCGTCCTGAAACTGAA
CGCTGGGTCGGATCGGTCTTGGGTGTGGAACGCCTTCGACTTCACCGGAG
GAGAGCTGGAGGAGACCACCTTCGCCCTTCGTTTCGGTAACTCCGACACG
GCCAAGGAGTTCCAGATAATCTGCAACCACGTGGCGGACCCGCGCATCGT
CCTGAAACTGAACGCTGGGTCGGATCGGTCTTGGGTGTGGAACGCCTTCG
ACTTCACCGGAGGAGAGCTGGAGGAGACCACCTTCGCCCTTCGTTTCGGT
AACTCCGACACGGCCAAGGAGTTC
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