mRNA_H-elongata_contig120123.1553.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Match: D8LFM5_ECTSI (Sodium/hydrogen exchanger n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM5_ECTSI) HSP 1 Score: 381 bits (978), Expect = 2.670e-127 Identity = 197/210 (93.81%), Postives = 205/210 (97.62%), Query Frame = 1
Query: 1 RQDFFHNIVSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYSENESFTAGTLPSTLWSFFTISLASTSVGVLIGLSCSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQVTFRLSF 630
++DFFHNI+SIVMFAVLGTLVSTFIIGYLTYLAGKLGLARI+TSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREY ENESFTAGTLPSTLWSFFTI++ASTSVGVLIGL+CSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQ+T F
Sbjct: 105 KKDFFHNILSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARINTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYQENESFTAGTLPSTLWSFFTITIASTSVGVLIGLACSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQITAEYIF 314
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Match: A0A835YNF3_9STRA (Sodium/hydrogen exchanger n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNF3_9STRA) HSP 1 Score: 299 bits (766), Expect = 3.850e-96 Identity = 152/204 (74.51%), Postives = 178/204 (87.25%), Query Frame = 1
Query: 1 RQDFFHNIVSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYSENESFTAGTLPSTLWSFFTISLASTSVGVLIGLSCSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQV 612
++ FF N+ SIV+FAV GTL+STFI+GYLTY AG GL ID SNPMEPLLFGALISAVD VATLSIMGS +L CDPLLYSLVFGES+LNDAV+IVLFRTFL+EYS NE +T TLP+TL SFF ISL S SVG LIGLSCSF++KH+RIRDYPKFEISLLFL +YGSYAFAEA++LSG+M++FF G++L+ YN +NLSPTSQ+
Sbjct: 97 KKHFFRNLGSIVLFAVGGTLMSTFIVGYLTYAAGYWGLINIDISNPMEPLLFGALISAVDTVATLSIMGSADLKCDPLLYSLVFGESILNDAVSIVLFRTFLQEYSRNEVYTVYTLPTTLASFFVISLGSLSVGALIGLSCSFIYKHSRIRDYPKFEISLLFLFAYGSYAFAEAIDLSGVMALFFNGLILSHYNYFNLSPTSQI 300
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Match: A0A835YPM8_9STRA (Sodium/hydrogen exchanger n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPM8_9STRA) HSP 1 Score: 282 bits (721), Expect = 4.150e-89 Identity = 145/205 (70.73%), Postives = 170/205 (82.93%), Query Frame = 1
Query: 1 RQDFFHNIVSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYSENESFTAGTLPSTLWSFFTISLASTSVGVLIGLSCSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQVT 615
+Q FF N+ +I++FAV GTLVSTFI+GYLTYL GL +D S PME L+FGALISAVDPVATLSIMGS E+ CDPLLYSLVFGESVLNDAV+IVLF TFL E +E +TA TLP+TL +F +SL S SVG LI LSCSF+FKHTRIRDYPKFEISLLFL +YG YAFAEA+ +SGIM++FF G++L+ YNTYNLS T+QVT
Sbjct: 93 KQHFFSNLGTIMLFAVFGTLVSTFIVGYLTYLGAAAGLLSVDASKPMELLMFGALISAVDPVATLSIMGSAEVKCDPLLYSLVFGESVLNDAVSIVLFHTFLHERMRSEVYTAMTLPATLLNFVGVSLGSLSVGALIALSCSFVFKHTRIRDYPKFEISLLFLFAYGCYAFAEAINMSGIMALFFNGLILSHYNTYNLSSTAQVT 297
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Match: F0XYH4_AURAN (Sodium/hydrogen exchanger n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYH4_AURAN) HSP 1 Score: 276 bits (706), Expect = 2.380e-87 Identity = 139/205 (67.80%), Postives = 166/205 (80.98%), Query Frame = 1
Query: 1 RQDFFHNIVSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYSENESFTAGTLPSTLWSFFTISLASTSVGVLIGLSCSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQVT 615
R++FF N+ +I +AV GT+VSTF++GYLT+ GK G+ ID +NPME LLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTF Y E E +P L F +SL S +GV+ GL CS++F+HTRIRDYPK+EISLLFL +YG+YA AE++ELSGIM++FF G+VLA YN+YNLS TSQVT
Sbjct: 104 RKNFFRNLGTITAYAVFGTVVSTFVVGYLTFACGKAGIIDIDGTNPMEALLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFYNYYEEGEELDQSKIPVALVEFLGVSLGSVFIGVITGLICSYIFRHTRIRDYPKYEISLLFLFAYGAYALAESIELSGIMALFFCGIVLAHYNSYNLSKTSQVT 308
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Match: A0A6S8SET2_9STRA (Sodium/hydrogen exchanger n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8SET2_9STRA) HSP 1 Score: 271 bits (693), Expect = 3.260e-87 Identity = 134/205 (65.37%), Postives = 164/205 (80.00%), Query Frame = 1
Query: 1 RQDFFHNIVSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYSENESFTAGTLPSTLWSFFTISLASTSVGVLIGLSCSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQVT 615
R++FF N+ +I M+AV+GTL+STF++GY TY + G+ +D +NPME LLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTF Y E +P L+ F +++ S +GV GL CS+LF+HTRIRDYPK+EISLLFL +YG+YA AE++ELSGIM++FF G+VLA YN+YNLS TSQ T
Sbjct: 102 RKNFFRNLGTITMYAVVGTLISTFVVGYFTYACARAGIVDVDATNPMEALLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFYNYYEEGAELDQSKIPVALFEFLFVTIGSILMGVATGLICSYLFRHTRIRDYPKYEISLLFLFAYGAYALAESIELSGIMALFFCGIVLAHYNSYNLSKTSQTT 306
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Match: A0A7S3ZNU3_9STRA (Sodium/hydrogen exchanger n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNU3_9STRA) HSP 1 Score: 271 bits (693), Expect = 1.130e-85 Identity = 134/205 (65.37%), Postives = 164/205 (80.00%), Query Frame = 1
Query: 1 RQDFFHNIVSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYSENESFTAGTLPSTLWSFFTISLASTSVGVLIGLSCSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQVT 615
R++FF N+ +I M+AV+GTL+STF++GY TY + G+ +D +NPME LLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTF Y E +P L+ F +++ S +GV GL CS+LF+HTRIRDYPK+EISLLFL +YG+YA AE++ELSGIM++FF G+VLA YN+YNLS TSQ T
Sbjct: 102 RKNFFRNLGTITMYAVVGTLISTFVVGYFTYACARAGIVDVDATNPMEALLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFYNYYEEGAELDQSKIPVALFEFLFVTIGSILMGVATGLICSYLFRHTRIRDYPKYEISLLFLFAYGAYALAESIELSGIMALFFCGIVLAHYNSYNLSKTSQTT 306
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Match: A0A7S3XWG5_HETAK (Sodium/hydrogen exchanger (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWG5_HETAK) HSP 1 Score: 271 bits (692), Expect = 2.680e-85 Identity = 137/210 (65.24%), Postives = 169/210 (80.48%), Query Frame = 1
Query: 1 RQDFFHNIVSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYSENESFTAGTLPSTLWSFFTISLASTSVGVLIGLSCSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQVTFRLSF 630
++ FF N SI+ FAV GTL+STFI+G LT++ GKL L ID++NPMEPL+FGALISAVDPVATLSI+G+PELNCDPLLYSLVFGESVLNDAVAIVLF+TF Y + FT TLP + +F +SL S VG LIGL CS+ KH+++R+YPK+EI+LLFL SYGSYAFAE++ELSGIM++FF G+VL+ YN+YNLS SQ+T F
Sbjct: 168 KKQFFSNFGSIIFFAVFGTLLSTFIVGGLTFMLGKLRLVDIDSNNPMEPLIFGALISAVDPVATLSILGTPELNCDPLLYSLVFGESVLNDAVAIVLFKTFQEFYLRGDPFTDATLPLVVGNFVGVSLGSVLVGCLIGLGCSYFCKHSQVREYPKYEIALLFLFSYGSYAFAESIELSGIMALFFCGIVLSHYNSYNLSQASQITAEYIF 377
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Match: A0A7S2SV23_9STRA (Sodium/hydrogen exchanger (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV23_9STRA) HSP 1 Score: 265 bits (677), Expect = 3.220e-83 Identity = 137/204 (67.16%), Postives = 162/204 (79.41%), Query Frame = 1
Query: 1 RQDFFHNIVSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYSENESFTAGTLPSTLWSFFTISLASTSVGVLIGLSCSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQV 612
R+ FF N +IV +AVLGTL+STFI+GYLTY GKLG ID NP+EPLLFGALISAVDPVATLSIMGS ELNCDPLLYSLVFGESVLNDAVAIVLFR F + Y EN++ + + + F +S S VGV IGL CSFLFK+T+I+ YP +E+ LLFL +YGSYAFAE++ LSGIMS+FF G+VLA YN+YNLS TSQ+
Sbjct: 104 RKHFFRNFGTIVAYAVLGTLISTFIVGYLTYGIGKLGWISIDKDNPIEPLLFGALISAVDPVATLSIMGSAELNCDPLLYSLVFGESVLNDAVAIVLFRVFFQYYDENKAIQQQQIAAVVVEFIIVSCGSVVVGVAIGLLCSFLFKNTQIQRYPSYEVGLLFLFAYGSYAFAESIRLSGIMSLFFCGIVLAHYNSYNLSDTSQI 307
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Match: A0A482RUC7_9ARCH (Sodium/hydrogen exchanger 3 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUC7_9ARCH) HSP 1 Score: 258 bits (658), Expect = 1.330e-81 Identity = 131/205 (63.90%), Postives = 167/205 (81.46%), Query Frame = 1
Query: 1 RQDFFHNIVSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYSENESFTAGTLPSTLWSFFTISLASTSVGVLIGLSCSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQVT 615
++DFF N +I +FAV GT++STF+IG+L Y G+ +D+S+P+E L+FGALISAVDPVATLSIMG+PELNC+PLLYSLVFGESVLNDAV+IVLF+TF+ + + FTA ++ + L F ISL S VGVLIGL CS+L KHT+I+ YP++EISLLFL +YGSYAF+EA+ LSGIMS+FF G+VL+ YN+YNLSP SQVT
Sbjct: 96 KKDFFANFWTISLFAVFGTIISTFVIGFLVYWTALAGIVNLDSSSPIEALVFGALISAVDPVATLSIMGNPELNCEPLLYSLVFGESVLNDAVSIVLFKTFMNSFEAGKEFTAYSMFTVLVDFAGISLGSIVVGVLIGLICSYLCKHTQIKLYPEYEISLLFLFAYGSYAFSEALNLSGIMSLFFNGIVLSHYNSYNLSPISQVT 300
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Match: A0A2D4CG30_PYTIN (Sodium/hydrogen exchanger (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CG30_PYTIN) HSP 1 Score: 249 bits (635), Expect = 1.090e-78 Identity = 130/196 (66.33%), Postives = 157/196 (80.10%), Query Frame = 1
Query: 28 SIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLLFGALISAVDPVATLSIMGSPELNCDPLLYSLVFGESVLNDAVAIVLFRTFLREYSENESFTAGTLPSTLWSFFTISLASTSVGVLIGLSCSFLFKHTRIRDYPKFEISLLFLSSYGSYAFAEAVELSGIMSIFFTGVVLATYNTYNLSPTSQVT 615
+I++FAVLGT+VSTFIIG+LT+ AGK G IDTS+P+E LLFGALISAVDPVATLSI+G+PELN DPLLYSLVFGESVLNDAVAIVLF TFL+ Y FT G + S + F ISL S + GV+ GL+CSF K+T I+ YP +EI+LLFL +YGSYA AE ++LSGIMS+FF G+ +A YN+YNLS SQVT
Sbjct: 89 TILLFAVLGTMVSTFIIGFLTFYAGKWGWISIDTSSPLEALLFGALISAVDPVATLSILGNPELNLDPLLYSLVFGESVLNDAVAIVLFNTFLKFYESQSEFTTGAIASLMVEFVFISLGSVACGVVTGLACSFTCKNTNIKGYPAYEITLLFLYAYGSYALAEVMKLSGIMSLFFCGITMAHYNSYNLSKESQVT 284 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120123.1553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig120123.1553.1 >prot_H-elongata_contig120123.1553.1 ID=prot_H-elongata_contig120123.1553.1|Name=mRNA_H-elongata_contig120123.1553.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp RQDFFHNIVSIVMFAVLGTLVSTFIIGYLTYLAGKLGLARIDTSNPMEPLback to top mRNA from alignment at H-elongata_contig120123:64..1683- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig120123.1553.1 ID=mRNA_H-elongata_contig120123.1553.1|Name=mRNA_H-elongata_contig120123.1553.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1620bp|location=Sequence derived from alignment at H-elongata_contig120123:64..1683- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig120123:64..1683- >mRNA_H-elongata_contig120123.1553.1 ID=mRNA_H-elongata_contig120123.1553.1|Name=mRNA_H-elongata_contig120123.1553.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig120123:64..1683- (Himanthalia elongata Himel1 dioecious)back to top |