mRNA_H-elongata_contig120119.1552.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120119.1552.1
Unique NamemRNA_H-elongata_contig120119.1552.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.860e-23
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCV 144
            DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRC+
Sbjct:  621 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCI 668
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BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Match: A0A835Z050_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z050_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.510e-18
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCV 144
            D D+GVIVGVG GRT+GKGLVQNV  LPY++ALKYTVAKYYTPSGRC+
Sbjct:  428 DTDSGVIVGVGKGRTFGKGLVQNVRPLPYDSALKYTVAKYYTPSGRCI 475
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BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Match: A0A7S1YXK9_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YXK9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.020e-16
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCV 144
            DLD GVIVG  N RT+GKGLVQNV +LPYN ALKYTVAKYYTPSGRC+
Sbjct:  575 DLDVGVIVG--NERTFGKGLVQNVEDLPYNTALKYTVAKYYTPSGRCI 620
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BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Match: K0R2J9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2J9_THAOC)

HSP 1 Score: 78.6 bits (192), Expect = 9.620e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCV 144
            DLD GV+VG   GRT+GKGLVQNV +LPY  ALKYTVAKYYTPSGRC+
Sbjct:  517 DLDVGVVVG--KGRTFGKGLVQNVQDLPYQTALKYTVAKYYTPSGRCI 562
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BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Match: B5YMX9_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMX9_THAPS)

HSP 1 Score: 78.6 bits (192), Expect = 9.620e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCV 144
            DLD GV+VG   GRT+GKGLVQNV +LPY  ALKYTVAKYYTPSGRC+
Sbjct:  668 DLDVGVVVG--KGRTFGKGLVQNVQDLPYQTALKYTVAKYYTPSGRCI 713
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BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Match: A0A7S2AM26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AM26_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.280e-15
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCV 144
            DLDAGVI+G    +T+GKGLVQNV+ LPYN ALKYTVAKYYTPSGRC+
Sbjct:  194 DLDAGVIIGAD--KTFGKGLVQNVSPLPYNTALKYTVAKYYTPSGRCI 239
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BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Match: A0A7S2KGE2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGE2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.670e-15
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCV 144
            DLD GVIVG  + R+YGKGLVQNV ELPY+ ALKYTVAKYYTPSGRC+
Sbjct:  160 DLDLGVIVG--SDRSYGKGLVQNVQELPYSTALKYTVAKYYTPSGRCI 205
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BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Match: A0A7S2KGF4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGF4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.800e-15
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCV 144
            DLD GVIVG  + R+YGKGLVQNV ELPY+ ALKYTVAKYYTPSGRC+
Sbjct:  530 DLDLGVIVG--SDRSYGKGLVQNVQELPYSTALKYTVAKYYTPSGRCI 575
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BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Match: A0A7S2U989_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U989_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.350e-15
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRC 141
            DLD G+IVG  + RT+GKGLVQNV  LP+N ALK+TVAKYYTPSGRC
Sbjct:   68 DLDVGLIVG--SDRTFGKGLVQNVETLPFNTALKFTVAKYYTPSGRC 112
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BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Match: A0A0G4EX77_VITBC (PDZ domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX77_VITBC)

HSP 1 Score: 76.6 bits (187), Expect = 4.580e-15
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCV 144
            DLD GVIVG G  RT+GKGLVQNV  LP++ ALKYTVAKYYTPSGRC+
Sbjct:  366 DLDCGVIVGTG--RTFGKGLVQNVEALPFDTALKYTVAKYYTPSGRCI 411
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120119.1552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L981_9PHAE1.860e-2397.92PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z050_9STRA3.510e-1881.25ClpP/crotonase-like domain-containing protein n=1 ... [more]
A0A7S1YXK9_9STRA2.020e-1681.25Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
K0R2J9_THAOC9.620e-1677.08Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B5YMX9_THAPS9.620e-1677.08Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2AM26_9STRA1.280e-1577.08Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2KGE2_9STRA1.670e-1579.17Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2KGF4_9STRA1.800e-1579.17Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2U989_9STRA3.350e-1574.47Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A0G4EX77_VITBC4.580e-1577.08PDZ domain-containing protein n=1 Tax=Vitrella bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120119contigH-elongata_contig120119:1427..1579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D7FJW2
EggNOG free text desc.Peptidase family S41
EggNOG OGs2RW0A@2759,COG0793@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.2774894-CDS-H-elongata_contig120119:1426..15791622929704.2774894-CDS-H-elongata_contig120119:1426..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120119 1427..1579 -
1691679125.4713407-CDS-H-elongata_contig120119:1426..15791691679125.4713407-CDS-H-elongata_contig120119:1426..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120119 1427..1579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120119.1552.1prot_H-elongata_contig120119.1552.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120119 1427..1579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120119.1552.1

>prot_H-elongata_contig120119.1552.1 ID=prot_H-elongata_contig120119.1552.1|Name=mRNA_H-elongata_contig120119.1552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
DLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGRCVLT
*
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mRNA from alignment at H-elongata_contig120119:1427..1579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120119.1552.1 ID=mRNA_H-elongata_contig120119.1552.1|Name=mRNA_H-elongata_contig120119.1552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig120119:1427..1579- (Himanthalia elongata Himel1 dioecious)
GATCTGGACGCTGGCGTTATCGTGGGAGTGGGCAACGGTCGAACCTACGG
CAAAGGACTCGTGCAAAACGTGGCAGAGCTTCCGTACAACAACGCCCTTA
AGTACACCGTGGCCAAGTACTATACCCCCAGTGGAAGGTGCGTGTTGACA
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig120119:1427..1579-

>mRNA_H-elongata_contig120119.1552.1 ID=mRNA_H-elongata_contig120119.1552.1|Name=mRNA_H-elongata_contig120119.1552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig120119:1427..1579- (Himanthalia elongata Himel1 dioecious)
GATCTGGACGCTGGCGTTATCGTGGGAGTGGGCAACGGTCGAACCTACGG
CAAAGGACTCGTGCAAAACGTGGCAGAGCTTCCGTACAACAACGCCCTTA
AGTACACCGTGGCCAAGTACTATACCCCCAGTGGAAGGTGCGTGTTGACA
TGAGATCTGGACGCTGGCGTTATCGTGGGAGTGGGCAACGGTCGAACCTA
CGGCAAAGGACTCGTGCAAAACGTGGCAGAGCTTCCGTACAACAACGCCC
TTAAGTACACCGTGGCCAAGTACTATACCCCCAGTGGAAGGTGCGTGTTG
ACATGA
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