mRNA_H-elongata_contig120060.1550.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120060.1550.1
Unique NamemRNA_H-elongata_contig120060.1550.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120060.1550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120060contigH-elongata_contig120060:148..629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size484
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.1428015-CDS-H-elongata_contig120060:147..4771622929704.1428015-CDS-H-elongata_contig120060:147..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120060 148..477 +
1691679125.4177635-CDS-H-elongata_contig120060:147..4771691679125.4177635-CDS-H-elongata_contig120060:147..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120060 148..477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.1558292-UTR-H-elongata_contig120060:477..6291622929704.1558292-UTR-H-elongata_contig120060:477..629Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120060 478..629 +
1691679125.4262424-UTR-H-elongata_contig120060:477..6291691679125.4262424-UTR-H-elongata_contig120060:477..629Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120060 478..629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120060.1550.1prot_H-elongata_contig120060.1550.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120060 148..477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120060.1550.1

>prot_H-elongata_contig120060.1550.1 ID=prot_H-elongata_contig120060.1550.1|Name=mRNA_H-elongata_contig120060.1550.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
DCAFRRPVSLRLLAIFVERVLFLRICYQREECLSCRHRCQRLGLRPSRSY
ARSLSKRPRFNGNTCYRWGLRGSHFCALTLLCISLNGHRPFRSCARTLYQ
RPCFEGPFR*
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mRNA from alignment at H-elongata_contig120060:148..629+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120060.1550.1 ID=mRNA_H-elongata_contig120060.1550.1|Name=mRNA_H-elongata_contig120060.1550.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=482bp|location=Sequence derived from alignment at H-elongata_contig120060:148..629+ (Himanthalia elongata Himel1 dioecious)
GACTGCGCGTTTCGCCGTCCCGTCTCCCTCCGCCTCCTCGCTATTTTCGT
CGAAAGAGTCCTCTTCCTCAGAATCTGCTACCAACGAGAAGAATGCCTTT
CCTGCCGCCATCGTTGCCAACGACTTGGCCTTCGTCCGTCGCGCAGCTAC
GCCAGATCCCTCAGCAAGCGGCCCCGGTTTAACGGTAACACCTGCTACCG
ATGGGGGCTGCGCGGGAGCCATTTCTGTGCCCTGACCCTTCTCTGTATTT
CCCTCAACGGTCACCGTCCCTTCCGCAGCTGTGCCAGAACCCTTTACCAG
CGGCCCTGCTTTGAGGGACCCTTCCGCTGACGATAAAGGCTGCGCGTGAG
TCGTTTTCGTGGTCATATCCTTGGATTCCTCCGCTGCGTTTCCCTCTACG
TTCGCCACCAACGAAAAGAACGCCTTCGCTGCGGCCGCGGTAGCCGTTCC
CGACGCAGCTCCACCAGATCCCTTTACCAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig120060:148..629+

>mRNA_H-elongata_contig120060.1550.1 ID=mRNA_H-elongata_contig120060.1550.1|Name=mRNA_H-elongata_contig120060.1550.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig120060:148..629+ (Himanthalia elongata Himel1 dioecious)
GACTGCGCGTTTCGCCGTCCCGTCTCCCTCCGCCTCCTCGCTATTTTCGT
CGAAAGAGTCCTCTTCCTCAGAATCTGCTACCAACGAGAAGAATGCCTTT
CCTGCCGCCATCGTTGCCAACGACTTGGCCTTCGTCCGTCGCGCAGCTAC
GCCAGATCCCTCAGCAAGCGGCCCCGGTTTAACGGTAACACCTGCTACCG
ATGGGGGCTGCGCGGGAGCCATTTCTGTGCCCTGACCCTTCTCTGTATTT
CCCTCAACGGTCACCGTCCCTTCCGCAGCTGTGCCAGAACCCTTTACCAG
CGGCCCTGCTTTGAGGGACCCTTCCGCTGAGACTGCGCGTTTCGCCGTCC
CGTCTCCCTCCGCCTCCTCGCTATTTTCGTCGAAAGAGTCCTCTTCCTCA
GAATCTGCTACCAACGAGAAGAATGCCTTTCCTGCCGCCATCGTTGCCAA
CGACTTGGCCTTCGTCCGTCGCGCAGCTACGCCAGATCCCTCAGCAAGCG
GCCCCGGTTTAACGGTAACACCTGCTACCGATGGGGGCTGCGCGGGAGCC
ATTTCTGTGCCCTGACCCTTCTCTGTATTTCCCTCAACGGTCACCGTCCC
TTCCGCAGCTGTGCCAGAACCCTTTACCAGCGGCCCTGCTTTGAGGGACC
CTTCCGCTGA
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