mRNA_H-elongata_contig120007.1546.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120007.1546.1
Unique NamemRNA_H-elongata_contig120007.1546.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120007.1546.1 vs. uniprot
Match: A0A6H5JCZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ4_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.320e-33
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    1 SNEYHLSRVIMVHEISETVSLLSPLKRLDASWGYEHVPYPYACYNDANKMFQADIYKTLEELVPLQVNVQAVARRE 228
            SNEYHLSR+I VH+ISETVSLL+PLK L+ASWGYE VPYPYAC ND  K FQAD+YKTLE+LVPLQVNVQAVA RE
Sbjct:   78 SNEYHLSRIITVHQISETVSLLAPLKLLEASWGYEQVPYPYACSNDDAKEFQADVYKTLEDLVPLQVNVQAVANRE 153
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BLAST of mRNA_H-elongata_contig120007.1546.1 vs. uniprot
Match: D7FW21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW21_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.400e-32
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    1 SNEYHLSRVIMVHEISETVSLLSPLKRLDASWGYEHVPYPYACYNDANKMFQADIYKTLEELVPLQVNVQAVARRE 228
            SNEYHLSR+I VH+ISETVSLL+PLK L+ASWGYE VPYPYAC ND  K FQA++YKTLE+LVPLQVNVQAVA RE
Sbjct:  499 SNEYHLSRIITVHQISETVSLLAPLKLLEASWGYEQVPYPYACSNDDAKEFQANVYKTLEDLVPLQVNVQAVANRE 574
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120007.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCZ4_9PHAE2.320e-3381.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW21_ECTSI1.400e-3280.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120007contigH-elongata_contig120007:579..1874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue8.6e-22
Seed eggNOG ortholog2880.D7FW21
EggNOG OGs2CY8W@1,2S2UA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120007.1546.1prot_H-elongata_contig120007.1546.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120007 579..1844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.724374-CDS-H-elongata_contig120007:578..6501622929703.724374-CDS-H-elongata_contig120007:578..650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120007 579..650 -
1691679125.205821-CDS-H-elongata_contig120007:578..6501691679125.205821-CDS-H-elongata_contig120007:578..650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120007 579..650 -
1622929703.737142-CDS-H-elongata_contig120007:1718..18441622929703.737142-CDS-H-elongata_contig120007:1718..1844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120007 1719..1844 -
1691679125.217132-CDS-H-elongata_contig120007:1718..18441691679125.217132-CDS-H-elongata_contig120007:1718..1844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120007 1719..1844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.7513251-UTR-H-elongata_contig120007:1844..18741622929703.7513251-UTR-H-elongata_contig120007:1844..1874Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120007 1845..1874 -
1691679125.22501-UTR-H-elongata_contig120007:1844..18741691679125.22501-UTR-H-elongata_contig120007:1844..1874Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120007 1845..1874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120007.1546.1

>prot_H-elongata_contig120007.1546.1 ID=prot_H-elongata_contig120007.1546.1|Name=mRNA_H-elongata_contig120007.1546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MVHEISETVSLLSPLKRLDASWGYEHVPYPYACYNDANKMFQADIYKTLE
ELVPLQVNVQAVARRE
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mRNA from alignment at H-elongata_contig120007:579..1874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120007.1546.1 ID=mRNA_H-elongata_contig120007.1546.1|Name=mRNA_H-elongata_contig120007.1546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1296bp|location=Sequence derived from alignment at H-elongata_contig120007:579..1874- (Himanthalia elongata Himel1 dioecious)
AGCAACGAATACCACCTATCTCGAGTCATCATGGTGCATGAAATCAGCGA
GACTGTGAGCCTGCTTTCCCCGCTCAAGCGGCTGGATGCCTCTTGGGGCT
ACGAGCACGTCCCTTACCCTTACGCGTGCTACAACGACGCAAACAAAATG
TTCCAGGTGAAGCGAGGATGGGGGAGGAGAGGGGAAGATGATTGGGAAAG
GATACCGTCGCCGCCGTTGTATATATCCGTTCGCGTGAACCGTGTGCAGC
AGACCCCCCCCCACGCCCTCCCCTTTGATAACACTTTGTACGCCGTTGCC
CGACGCCTGCTCTTTTAAATAGCAATAATTACATATGAACATGGGTTATA
TAATAAACAGTAAGATACCTGTGCTCAGCAGCAGTCCCGTGTCCTCCGAG
CTCCAAGCGGCCGTTCCTCCTGAGTGTTTTTTAGCCCCGTAAACAATTTT
TTTCGATGCTTGCCGTTTTGTACCGGTGCGCGGTACCGAATACCGAATGC
CGGAGGACGTTTTCAAATCCGTTCAACCATAATCATTGGGGCACATCCCC
TTGGGTGCTGAGGGGTAATGTTCGACTCGAAGGTTGGGAATGAGGAGCTA
GCTTTAGATGCAGTTTTCGATTTTCCCTTTGAATTACGGATAATCCTGGA
AAAGCCATAAAAATCTCACAAATATCAAACATAAAGCTATCAATGGTTTT
CGCTGACCCAGACACAGGTATAGGCTTTCGCTGTGTTTTGCACACTTCGT
GCTACGATGCCGTATCGCGAGTCGTATTGCGAGTCGTACCATGAATCATA
TATGAATCGTATGGTGAATCTCATCACATCAGAACACAAATGTTTCATGA
GTCGTATATTAACTCGTGTTAGGTATCACGAATTGTATCAATTATTGCAT
TACGAATCGTTCGTCCTATCGTAGAGACATGGTAGAATGTCGTGCTTCGG
CTATCGGCGCTCTACTGCATTTATACACATCGATGATGTTGTTACCGACT
TCTTATCCTTGTGTGTTTGAAAGTGTGACGCCCCGTGGGGCATGTCACCA
TCCCGGCACGGATGCCTGATCGTCTCAAGTTTCATGCCATAGTTCCATGG
ACTCTTATAATTCCCGGACCGTTTCATGGCATAGTTCCCAAAAAAAAAAC
AGCGGCAAATCCCGGACCGTTTCGGTTTGCACCTTTCGTAGTGATGATGG
TCGTGATGATGATGGTGATCGCAGGCAGATATTTACAAGACCCTGGAGGA
GCTGGTGCCTCTTCAGGTCAACGTGCAGGCGGTTGCTCGTCGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig120007:579..1874-

>mRNA_H-elongata_contig120007.1546.1 ID=mRNA_H-elongata_contig120007.1546.1|Name=mRNA_H-elongata_contig120007.1546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig120007:579..1874- (Himanthalia elongata Himel1 dioecious)
ATGGTGCATGAAATCAGCGAGACTGTGAGCCTGCTTTCCCCGCTCAAGCG
GCTGGATGCCTCTTGGGGCTACGAGCACGTCCCTTACCCTTACGCGTGCT
ACAACGACGCAAACAAAATGTTCCAGATGGTGCATGAAATCAGCGAGACT
GTGAGCCTGCTTTCCCCGCTCAAGCGGCTGGATGCCTCTTGGGGCTACGA
GCACGTCCCTTACCCTTACGCGTGCTACAACGACGCAAACAAAATGTTCC
AGGCAGATATTTACAAGACCCTGGAGGAGCTGGTGCCTCTTCAGGTCAAC
GTGCAGGCGGTTGCTCGTCGAGAGGCAGATATTTACAAGACCCTGGAGGA
GCTGGTGCCTCTTCAGGTCAACGTGCAGGCGGTTGCTCGTCGAGAG
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