mRNA_H-elongata_contig120002.1544.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120002.1544.1
Unique NamemRNA_H-elongata_contig120002.1544.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120002.1544.1 vs. uniprot
Match: D7FLU8_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.010e-10
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 ILYGRDRKEWLEQSAEAKGRYAFLARTNASLIFEAIMAMNRGENLAFVGGIGSVKMNVRTAC 186
            +++ R+R EWL+Q  E+KGR+A++ARTNA L+ EA+ A+ RG+  AF+ G       V+  C
Sbjct:  418 VVFERERHEWLQQDCESKGRFAYIARTNAGLMTEAVAAIGRGDRAAFMDGRAPNLQEVKDLC 479
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120002.1544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLU8_ECTSI3.010e-1043.55DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120002contigH-elongata_contig120002:766..1310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog2880.D7FLU8
Preferred nameFBXO18
KEGG koko:K10300
GOsGO:0000018,GO:0000151,GO:0000152,GO:0000724,GO:0000725,GO:0000737,GO:0000785,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006282,GO:0006302,GO:0006308,GO:0006310,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009607,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010498,GO:0010556,GO:0010558,GO:0010562,GO:0010569,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0015616,GO:0016043,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017116,GO:0017117,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019941,GO:0023051,GO:0023056,GO:0030163,GO:0030674,GO:0031146,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031461,GO:0032268,GO:0032270,GO:0032392,GO:0032446,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0034645,GO:0034655,GO:0035561,GO:0035562,GO:0036211,GO:0042325,GO:0042327,GO:0042623,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043138,GO:0043140,GO:0043142,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045738,GO:0045910,GO:0045934,GO:0045937,GO:0046483,GO:0046700,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0060542,GO:0065007,GO:0065009,GO:0070035,GO:0070647,GO:0071103,GO:0071216,GO:0071495,GO:0071704,GO:0071840,GO:0072396,GO:0072402,GO:0072423,GO:0072429,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0140097,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902229,GO:1902231,GO:1902494,GO:1902531,GO:1902533,GO:1904949,GO:1990234,GO:1990518,GO:2000042,GO:2000104,GO:2000112,GO:2000113,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.6104355-CDS-H-elongata_contig120002:765..8741622929703.6104355-CDS-H-elongata_contig120002:765..874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120002 766..874 -
1691679125.1788402-CDS-H-elongata_contig120002:765..8741691679125.1788402-CDS-H-elongata_contig120002:765..874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120002 766..874 -
1622929703.6304064-CDS-H-elongata_contig120002:1233..13101622929703.6304064-CDS-H-elongata_contig120002:1233..1310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120002 1234..1310 -
1691679125.18987-CDS-H-elongata_contig120002:1233..13101691679125.18987-CDS-H-elongata_contig120002:1233..1310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120002 1234..1310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120002.1544.1prot_H-elongata_contig120002.1544.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120002 766..1310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120002.1544.1

>prot_H-elongata_contig120002.1544.1 ID=prot_H-elongata_contig120002.1544.1|Name=mRNA_H-elongata_contig120002.1544.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
ILYGRDRKEWLEQSAEAKGRYAFLARTNASLIFEAIMAMNRGENLAFVGG
IGSVKMNVRTAC
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mRNA from alignment at H-elongata_contig120002:766..1310-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120002.1544.1 ID=mRNA_H-elongata_contig120002.1544.1|Name=mRNA_H-elongata_contig120002.1544.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=545bp|location=Sequence derived from alignment at H-elongata_contig120002:766..1310- (Himanthalia elongata Himel1 dioecious)
ATTCTGTACGGGCGCGATCGGAAAGAGTGGCTGGAGCAGAGCGCGGAAGC
AAAGGGGCGCTATGCATTCCTGGCGAGGTTCGTGGGAGGGTCTTAACTCC
TTAGTCGGAACGATTAAAGCACTTAGCGCCCGGCGTACAGCAACAAGGCA
GCGGGGGATCTGAAAAACGCCTTCCGCGTTTGTTTGTTTTTCCCCCTATG
AATCAATCCGTACTTTTTCTTGGCAGACGGTTTTGTTGCCTTTAGTGTCA
TCGATGAGCGCAATGAACGGCCACCGCCTCTTTAGAGCTCCAGCCGTTAC
GAACGTTTTTGGATGTGCACTTTTGTTTCTTTTTTTTTTGCCTTGTTTTT
CTTTTCTTGCTCTTCTAAATGACGATATTAAGTTAACTGAATGTTTTTAT
TCTCTTTAACATCGTTCCCCCGCCTGCATTTGACAGAACTAATGCCTCGT
TGATCTTCGAAGCCATAATGGCCATGAATCGTGGAGAGAACTTGGCCTTC
GTCGGGGGCATTGGATCGGTTAAGATGAACGTGAGGACTGCGTGT
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Coding sequence (CDS) from alignment at H-elongata_contig120002:766..1310-

>mRNA_H-elongata_contig120002.1544.1 ID=mRNA_H-elongata_contig120002.1544.1|Name=mRNA_H-elongata_contig120002.1544.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig120002:766..1310- (Himanthalia elongata Himel1 dioecious)
ATTCTGTACGGGCGCGATCGGAAAGAGTGGCTGGAGCAGAGCGCGGAAGC
AAAGGGGCGCTATGCATTCCTGGCGAGATTCTGTACGGGCGCGATCGGAA
AGAGTGGCTGGAGCAGAGCGCGGAAGCAAAGGGGCGCTATGCATTCCTGG
CGAGAACTAATGCCTCGTTGATCTTCGAAGCCATAATGGCCATGAATCGT
GGAGAGAACTTGGCCTTCGTCGGGGGCATTGGATCGGTTAAGATGAACGT
GAGGACTGCGTGTAACTAATGCCTCGTTGATCTTCGAAGCCATAATGGCC
ATGAATCGTGGAGAGAACTTGGCCTTCGTCGGGGGCATTGGATCGGTTAA
GATGAACGTGAGGACTGCGTGT
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