mRNA_H-elongata_contig11999.1542.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11999.1542.1
Unique NamemRNA_H-elongata_contig11999.1542.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11999.1542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11999contigH-elongata_contig11999:767..3312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1565
Cds size1563
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11999.1542.1prot_H-elongata_contig11999.1542.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11999 769..3312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.4102857-CDS-H-elongata_contig11999:768..18931622929703.4102857-CDS-H-elongata_contig11999:768..1893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 769..1893 -
1691679125.1092167-CDS-H-elongata_contig11999:768..18931691679125.1092167-CDS-H-elongata_contig11999:768..1893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 769..1893 -
1622929703.4260547-CDS-H-elongata_contig11999:2376..25321622929703.4260547-CDS-H-elongata_contig11999:2376..2532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 2377..2532 -
1691679125.1184773-CDS-H-elongata_contig11999:2376..25321691679125.1184773-CDS-H-elongata_contig11999:2376..2532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 2377..2532 -
1622929703.442307-CDS-H-elongata_contig11999:3030..33121622929703.442307-CDS-H-elongata_contig11999:3030..3312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 3031..3312 -
1691679125.1287308-CDS-H-elongata_contig11999:3030..33121691679125.1287308-CDS-H-elongata_contig11999:3030..3312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 3031..3312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11999.1542.1

>prot_H-elongata_contig11999.1542.1 ID=prot_H-elongata_contig11999.1542.1|Name=mRNA_H-elongata_contig11999.1542.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=521bp
QSRARQEGSPDAVATVTVGRRRLRGRSRRRGTRAAAIDGPQSEAGREEGA
ETGGGGDMPRNHISFCTVPLPLEDDDGGEGAVESRTIGGRHDVERGERRA
RDSCKPRSPEVVPEAAEHPGAGFGEATGEIRQARARPSRLSNDVTEESQS
PDPANGPEARSPEKYLERRRRSIDRGQGQGIHFRAPREPSVSPLVIENAD
SDSGDDAPLDRRYRRPASLEIHRPRGDSDKGRKRVVAVAAGSIVEDARDY
PISRNETGDPPAVGGISVDPPAAGVAERRSAPRVIVDDQNTAVGARSRSL
AEATEKDSTPAIEERWRPACRERRSFDDDWSAAAAVKAPTSPAPFLKGKE
QVACADALAVRLRAVAVSGREAGVAEADVGVPSPLVSLPVSLPASEQVNS
SPDDSALALARCSTVPCSEQIETSCSGRGEGDTGNTKAFSEGVVGPRDEE
MEAVEGPFQGSTVSARLEDMIDGTGAEVYDTEEVFAGDVDGAGGGGDGYR
GDAAYASLLIAEHLELYLRQQ
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mRNA from alignment at H-elongata_contig11999:767..3312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11999.1542.1 ID=mRNA_H-elongata_contig11999.1542.1|Name=mRNA_H-elongata_contig11999.1542.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2546bp|location=Sequence derived from alignment at H-elongata_contig11999:767..3312- (Himanthalia elongata Himel1 dioecious)
CAGTCCCGAGCCCGACAGGAAGGTAGCCCTGACGCCGTGGCCACCGTGAC
CGTTGGACGTCGTCGCCTCAGGGGAAGGAGTAGGAGAAGGGGCACGCGCG
CCGCTGCTATCGACGGACCGCAGTCAGAAGCTGGTAGGGAGGAAGGAGCG
GAGACTGGCGGCGGGGGTGACATGCCGCGGAATCATATTTCTTTCTGTAC
GGTGCCCTTGCCGTTGGAAGATGATGACGGCGGGGAGGGTGCCGTAGAGT
CCCGCACGATTGGTGGACGGCATGACGTTGAGGTAGGGATGGGAGGTGAT
GTAGGAGTTTCTGATGCGAGCAGGATCAGAGTGTCGCCTAAGCTCTTTGC
GGCTCGTTAAACCGTGAAAGCTTGGATGGTGGGGGGAGGGGGGGATGAGG
GGGCAGTTCGTGTGGCGTTTATTGGACGAGTGTTGTTCCCTTGATCGATT
TGGTTTTCTGCGACGAGCGTTTGTCGGCGATTAGTTTTGTGCTCGAGCGT
AACTGATCGCCCATTAAAACCCTAGTATGCTGTAGTTTTCCCTTCTACGA
GTACCCCCCGCAGCCACGGCGACTTCCGCTTTCCTCTTTTGTGTGTATGT
GTGTGTTGGTTTTATTTAATTTTGTTTTGTTTTTTTCGTTTTTTCGCTTC
ATTGTATGTCTACACCACTCAAATGATTAGGCGCAAGGCGTTGAATTTTT
GTGTTCGCACGCCCACGCCCACTTTTTCCATTCGTCGTCGGACATGGCTT
TAAACACCACGCTTATCCCCCGCCGTGAAGAGAGGAGAGCGGCGCGCGAG
AGACAGCTGTAAACCGCGAAGCCCCGAGGTCGTGCCCGAAGCCGCTGAAC
ACCCGGGCGCAGGGTTCGGCGAGGCAACTGGAGAAATCCGCCAAGCGCGG
GCGAGACCTTCGCGGTTGTCGAACGACGTGACCGAGGTAAGGTGGACATG
GAGGCGGAGGCGGCGCGGCTACGTAGAGTAGCAGCCTGTGCGCGGCATTT
ATCATGGCCGTGTTAGCGCAAAGCACTACTATTAGTAAACTGCTTGTGAA
GGAACTGTCCCCGGAGGTGTTAAAACCTTCTTTTATCAATATATTAATTA
TCTCTGTGGAGACCTTTCAAAAGCCACGGCTATCCCCCCGCCCCTCAAAG
CATCCCAACGCTCCATCCCCCGTTGGACCATAAAATAGGGGACGGTAAAG
CTGATCGCCGACTCCCTAGAAAATACTGCGCACTGTGCTGTTTCTGTTGA
GTTCGGAAGTATTGTGGTTTAGTTATATCGTTGTTTTGGTGGGTTACGGG
AGCGTTGGACTTGGTGACCTCAACTCAACTGCAGGAAGTGATATCAAACA
AGCACACGCTAACACACCAACCCGCAAACACGTTTATCTTGCTGGGCATA
TGTGTTCTTCCATGACAAGGAGAGCCAGAGCCCAGATCCAGCGAACGGTC
CAGAAGCGCGCTCTCCGGAGAAGTATTTAGAGAGGCGACGGCGTTCAATA
GATCGGGGTCAGGGTCAGGGTATACATTTCAGGGCGCCGCGGGAGCCTTC
CGTCTCACCGCTTGTCATAGAAAACGCGGACAGCGACAGTGGTGACGATG
CGCCTCTGGACAGACGCTACCGCCGGCCGGCTTCTCTCGAGATTCATCGG
CCTAGGGGCGATTCTGACAAAGGAAGAAAGCGTGTTGTTGCCGTTGCGGC
TGGCTCGATCGTCGAGGACGCACGGGACTACCCCATATCTAGGAATGAAA
CCGGCGATCCCCCCGCCGTCGGGGGCATTTCGGTTGATCCGCCTGCTGCC
GGCGTGGCGGAGAGGCGAAGCGCGCCCCGTGTAATCGTCGATGACCAGAA
TACAGCCGTCGGAGCGCGGTCGAGGAGCCTGGCGGAAGCAACGGAAAAAG
ACTCCACGCCAGCAATAGAAGAGAGATGGCGTCCGGCGTGCAGAGAGAGG
AGATCCTTCGACGACGATTGGTCGGCAGCCGCTGCCGTCAAAGCACCGAC
ATCGCCAGCGCCGTTTCTTAAAGGGAAAGAACAAGTGGCTTGCGCGGACG
CGCTTGCGGTTAGGCTCCGCGCCGTTGCCGTCTCTGGAAGGGAGGCAGGG
GTGGCGGAAGCGGACGTAGGAGTGCCTTCGCCGCTGGTGTCGCTACCAGT
ATCTTTACCCGCATCGGAACAAGTAAACTCGTCACCCGACGACTCCGCTC
TGGCGCTCGCAAGATGTTCTACGGTTCCGTGTTCCGAGCAGATAGAGACG
AGCTGCTCGGGCCGCGGAGAAGGCGATACCGGAAATACGAAGGCGTTTTC
GGAAGGAGTCGTGGGCCCTCGAGACGAAGAGATGGAAGCTGTCGAGGGTC
CCTTCCAGGGTTCCACTGTTTCCGCGCGGCTAGAGGACATGATAGATGGT
ACAGGGGCGGAGGTGTATGATACAGAGGAGGTTTTTGCTGGTGATGTTGA
TGGTGCTGGCGGCGGAGGAGACGGTTACAGGGGAGATGCGGCGTACGCGA
GCCTTTTGATCGCGGAGCATCTCGAGCTTTATCTTCGGCAGCAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig11999:767..3312-

>mRNA_H-elongata_contig11999.1542.1 ID=mRNA_H-elongata_contig11999.1542.1|Name=mRNA_H-elongata_contig11999.1542.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3126bp|location=Sequence derived from alignment at H-elongata_contig11999:767..3312- (Himanthalia elongata Himel1 dioecious)
CAGTCCCGAGCCCGACAGGAAGGTAGCCCTGACGCCGTGGCCACCGTGAC
CGTTGGACGTCGTCGCCTCAGGGGAAGGAGTAGGAGAAGGGGCACGCGCG
CCGCTGCTATCGACGGACCGCAGTCAGAAGCTGGTAGGGAGGAAGGAGCG
GAGACTGGCGGCGGGGGTGACATGCCGCGGAATCATATTTCTTTCTGTAC
GGTGCCCTTGCCGTTGGAAGATGATGACGGCGGGGAGGGTGCCGTAGAGT
CCCGCACGATTGGTGGACGGCATGACGTTGAGCAGTCCCGAGCCCGACAG
GAAGGTAGCCCTGACGCCGTGGCCACCGTGACCGTTGGACGTCGTCGCCT
CAGGGGAAGGAGTAGGAGAAGGGGCACGCGCGCCGCTGCTATCGACGGAC
CGCAGTCAGAAGCTGGTAGGGAGGAAGGAGCGGAGACTGGCGGCGGGGGT
GACATGCCGCGGAATCATATTTCTTTCTGTACGGTGCCCTTGCCGTTGGA
AGATGATGACGGCGGGGAGGGTGCCGTAGAGTCCCGCACGATTGGTGGAC
GGCATGACGTTGAGAGAGGAGAGCGGCGCGCGAGAGACAGCTGTAAACCG
CGAAGCCCCGAGGTCGTGCCCGAAGCCGCTGAACACCCGGGCGCAGGGTT
CGGCGAGGCAACTGGAGAAATCCGCCAAGCGCGGGCGAGACCTTCGCGGT
TGTCGAACGACGTGACCGAGAGAGGAGAGCGGCGCGCGAGAGACAGCTGT
AAACCGCGAAGCCCCGAGGTCGTGCCCGAAGCCGCTGAACACCCGGGCGC
AGGGTTCGGCGAGGCAACTGGAGAAATCCGCCAAGCGCGGGCGAGACCTT
CGCGGTTGTCGAACGACGTGACCGAGGAGAGCCAGAGCCCAGATCCAGCG
AACGGTCCAGAAGCGCGCTCTCCGGAGAAGTATTTAGAGAGGCGACGGCG
TTCAATAGATCGGGGTCAGGGTCAGGGTATACATTTCAGGGCGCCGCGGG
AGCCTTCCGTCTCACCGCTTGTCATAGAAAACGCGGACAGCGACAGTGGT
GACGATGCGCCTCTGGACAGACGCTACCGCCGGCCGGCTTCTCTCGAGAT
TCATCGGCCTAGGGGCGATTCTGACAAAGGAAGAAAGCGTGTTGTTGCCG
TTGCGGCTGGCTCGATCGTCGAGGACGCACGGGACTACCCCATATCTAGG
AATGAAACCGGCGATCCCCCCGCCGTCGGGGGCATTTCGGTTGATCCGCC
TGCTGCCGGCGTGGCGGAGAGGCGAAGCGCGCCCCGTGTAATCGTCGATG
ACCAGAATACAGCCGTCGGAGCGCGGTCGAGGAGCCTGGCGGAAGCAACG
GAAAAAGACTCCACGCCAGCAATAGAAGAGAGATGGCGTCCGGCGTGCAG
AGAGAGGAGATCCTTCGACGACGATTGGTCGGCAGCCGCTGCCGTCAAAG
CACCGACATCGCCAGCGCCGTTTCTTAAAGGGAAAGAACAAGTGGCTTGC
GCGGACGCGCTTGCGGTTAGGCTCCGCGCCGTTGCCGTCTCTGGAAGGGA
GGCAGGGGTGGCGGAAGCGGACGTAGGAGTGCCTTCGCCGCTGGTGTCGC
TACCAGTATCTTTACCCGCATCGGAACAAGTAAACTCGTCACCCGACGAC
TCCGCTCTGGCGCTCGCAAGATGTTCTACGGTTCCGTGTTCCGAGCAGAT
AGAGACGAGCTGCTCGGGCCGCGGAGAAGGCGATACCGGAAATACGAAGG
CGTTTTCGGAAGGAGTCGTGGGCCCTCGAGACGAAGAGATGGAAGCTGTC
GAGGGTCCCTTCCAGGGTTCCACTGTTTCCGCGCGGCTAGAGGACATGAT
AGATGGTACAGGGGCGGAGGTGTATGATACAGAGGAGGTTTTTGCTGGTG
ATGTTGATGGTGCTGGCGGCGGAGGAGACGGTTACAGGGGAGATGCGGCG
TACGCGAGCCTTTTGATCGCGGAGCATCTCGAGCTTTATCTTCGGCAGCA
GGAGAGCCAGAGCCCAGATCCAGCGAACGGTCCAGAAGCGCGCTCTCCGG
AGAAGTATTTAGAGAGGCGACGGCGTTCAATAGATCGGGGTCAGGGTCAG
GGTATACATTTCAGGGCGCCGCGGGAGCCTTCCGTCTCACCGCTTGTCAT
AGAAAACGCGGACAGCGACAGTGGTGACGATGCGCCTCTGGACAGACGCT
ACCGCCGGCCGGCTTCTCTCGAGATTCATCGGCCTAGGGGCGATTCTGAC
AAAGGAAGAAAGCGTGTTGTTGCCGTTGCGGCTGGCTCGATCGTCGAGGA
CGCACGGGACTACCCCATATCTAGGAATGAAACCGGCGATCCCCCCGCCG
TCGGGGGCATTTCGGTTGATCCGCCTGCTGCCGGCGTGGCGGAGAGGCGA
AGCGCGCCCCGTGTAATCGTCGATGACCAGAATACAGCCGTCGGAGCGCG
GTCGAGGAGCCTGGCGGAAGCAACGGAAAAAGACTCCACGCCAGCAATAG
AAGAGAGATGGCGTCCGGCGTGCAGAGAGAGGAGATCCTTCGACGACGAT
TGGTCGGCAGCCGCTGCCGTCAAAGCACCGACATCGCCAGCGCCGTTTCT
TAAAGGGAAAGAACAAGTGGCTTGCGCGGACGCGCTTGCGGTTAGGCTCC
GCGCCGTTGCCGTCTCTGGAAGGGAGGCAGGGGTGGCGGAAGCGGACGTA
GGAGTGCCTTCGCCGCTGGTGTCGCTACCAGTATCTTTACCCGCATCGGA
ACAAGTAAACTCGTCACCCGACGACTCCGCTCTGGCGCTCGCAAGATGTT
CTACGGTTCCGTGTTCCGAGCAGATAGAGACGAGCTGCTCGGGCCGCGGA
GAAGGCGATACCGGAAATACGAAGGCGTTTTCGGAAGGAGTCGTGGGCCC
TCGAGACGAAGAGATGGAAGCTGTCGAGGGTCCCTTCCAGGGTTCCACTG
TTTCCGCGCGGCTAGAGGACATGATAGATGGTACAGGGGCGGAGGTGTAT
GATACAGAGGAGGTTTTTGCTGGTGATGTTGATGGTGCTGGCGGCGGAGG
AGACGGTTACAGGGGAGATGCGGCGTACGCGAGCCTTTTGATCGCGGAGC
ATCTCGAGCTTTATCTTCGGCAGCAG
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