mRNA_H-elongata_contig119883.1536.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119883.1536.1
Unique NamemRNA_H-elongata_contig119883.1536.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119883.1536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119883contigH-elongata_contig119883:369..900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size532
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119883.1536.1prot_H-elongata_contig119883.1536.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119883 379..795 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.581965-UTR-H-elongata_contig119883:368..3781622929702.581965-UTR-H-elongata_contig119883:368..378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119883 369..378 +
1691679124.9308019-UTR-H-elongata_contig119883:368..3781691679124.9308019-UTR-H-elongata_contig119883:368..378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119883 369..378 +
1622929702.623938-UTR-H-elongata_contig119883:795..9001622929702.623938-UTR-H-elongata_contig119883:795..900Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119883 796..900 +
1691679124.9554758-UTR-H-elongata_contig119883:795..9001691679124.9554758-UTR-H-elongata_contig119883:795..900Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119883 796..900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.6060233-CDS-H-elongata_contig119883:378..7951622929702.6060233-CDS-H-elongata_contig119883:378..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119883 379..795 +
1691679124.9415164-CDS-H-elongata_contig119883:378..7951691679124.9415164-CDS-H-elongata_contig119883:378..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119883 379..795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119883.1536.1

>prot_H-elongata_contig119883.1536.1 ID=prot_H-elongata_contig119883.1536.1|Name=mRNA_H-elongata_contig119883.1536.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MFLSCRWRVSFLPLACPFLVVRVFLSCRWRVSFLPLACSFLVVRVFLSYR
KGVPFLPLACIFLAVGMFLSCRKGVPFLSLACSFLVVRGFLSCRWRVSFL
PLACMFLSCRKAGSYRTTKIKISSRFKLKSGSDCSKGK*
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mRNA from alignment at H-elongata_contig119883:369..900+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119883.1536.1 ID=mRNA_H-elongata_contig119883.1536.1|Name=mRNA_H-elongata_contig119883.1536.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=532bp|location=Sequence derived from alignment at H-elongata_contig119883:369..900+ (Himanthalia elongata Himel1 dioecious)
TGCCGTTGGAATGTTTCTTTCTTGCCGTTGGCGTGTATCTTTCTTGCCGT
TGGCATGTCCCTTTCTTGTCGTAAGGGTGTTCCTTTCTTGCCGTTGGCGT
GTATCTTTCTTGCCGTTGGCATGTTCCTTTCTTGTCGTAAGGGTGTTCCT
TTCTTATCGTAAGGGTGTTCCTTTCTTGCCGTTGGCGTGTATCTTTCTTG
CCGTTGGCATGTTCCTTTCTTGTCGTAAGGGGGTTCCTTTCTTGTCGTTG
GCATGTTCCTTTCTTGTCGTAAGGGGGTTCCTTTCTTGCCGTTGGCGTGT
ATCTTTTTTGCCGTTGGCATGTATGTTCCTTTCTTGTCGTAAGGCCGGGT
CTTATCGAACTACAAAAATTAAAATTTCCAGCCGATTTAAATTAAAATCG
GGCTCTGATTGTTCAAAAGGTAAATAACGCCTAGCTTCGTCCAATCAGAG
CTCGATTTAAATATAAATCGGCTGGAAGTTAAACTTTTGTAACCCCGTTA
ACACCCGCCCTAAGGGTGTTCCTTTCTTGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig119883:369..900+

>mRNA_H-elongata_contig119883.1536.1 ID=mRNA_H-elongata_contig119883.1536.1|Name=mRNA_H-elongata_contig119883.1536.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig119883:369..900+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCTTTCTTGCCGTTGGCGTGTATCTTTCTTGCCGTTGGCATGTCC
CTTTCTTGTCGTAAGGGTGTTCCTTTCTTGCCGTTGGCGTGTATCTTTCT
TGCCGTTGGCATGTTCCTTTCTTGTCGTAAGGGTGTTCCTTTCTTATCGT
AAGGGTGTTCCTTTCTTGCCGTTGGCGTGTATCTTTCTTGCCGTTGGCAT
GTTCCTTTCTTGTCGTAAGGGGGTTCCTTTCTTGTCGTTGGCATGTTCCT
TTCTTGTCGTAAGGGGGTTCCTTTCTTGCCGTTGGCGTGTATCTTTTTTG
CCGTTGGCATGTATGTTCCTTTCTTGTCGTAAGGCCGGGTCTTATCGAAC
TACAAAAATTAAAATTTCCAGCCGATTTAAATTAAAATCGGGCTCTGATT
GTTCAAAAGGTAAATAAATGTTTCTTTCTTGCCGTTGGCGTGTATCTTTC
TTGCCGTTGGCATGTCCCTTTCTTGTCGTAAGGGTGTTCCTTTCTTGCCG
TTGGCGTGTATCTTTCTTGCCGTTGGCATGTTCCTTTCTTGTCGTAAGGG
TGTTCCTTTCTTATCGTAAGGGTGTTCCTTTCTTGCCGTTGGCGTGTATC
TTTCTTGCCGTTGGCATGTTCCTTTCTTGTCGTAAGGGGGTTCCTTTCTT
GTCGTTGGCATGTTCCTTTCTTGTCGTAAGGGGGTTCCTTTCTTGCCGTT
GGCGTGTATCTTTTTTGCCGTTGGCATGTATGTTCCTTTCTTGTCGTAAG
GCCGGGTCTTATCGAACTACAAAAATTAAAATTTCCAGCCGATTTAAATT
AAAATCGGGCTCTGATTGTTCAAAAGGTAAATAA
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