mRNA_H-elongata_contig119859.1532.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119859.1532.1
Unique NamemRNA_H-elongata_contig119859.1532.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A0J8BG93_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BG93_BETVV)

HSP 1 Score: 90.1 bits (222), Expect = 1.610e-21
Identity = 48/84 (57.14%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 SLRPCWRQRGXXXX----RDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
            SL  CWRQRG        R+LP+KEFRYLRTVIVTA  YRG   +       +R RAGV PYT S + AE CVF KQ PPP LC
Sbjct:   11 SLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSVLAPLLLTFRHRAGVRPYTSSYDFAEPCVFVKQLPPPGLC 94          
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A7VSA7_9FIRM (Uncharacterized protein n=1 Tax=[Clostridium] leptum DSM 753 TaxID=428125 RepID=A7VSA7_9FIRM)

HSP 1 Score: 87.0 bits (214), Expect = 4.330e-20
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 LRPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
            +R C  +      R+LP+KEFRYLRTVIVTA  Y G   M  H    ++ RAGVSPYT S +LAETCVF KQSP PI C
Sbjct:    1 MRQCPDRYTIRAGRNLPDKEFRYLRTVIVTAAVYWGFNSMLAHLLLTFQHRAGVSPYTSSFDLAETCVFAKQSPGPIHC 79          
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A1C6I9E2_9FIRM (Uncharacterized protein n=1 Tax=uncultured Ruminococcus sp. TaxID=165186 RepID=A0A1C6I9E2_9FIRM)

HSP 1 Score: 87.8 bits (216), Expect = 8.820e-20
Identity = 46/79 (58.23%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 LRPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
            +R C  +      R+LP+KEFRYLRTVIVTA  YRG           +R RAGVSPYT S +LAETCVF KQSP PILC
Sbjct:    1 MRQCPDRYTIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSELSLLLLTFRHRAGVSPYTSSFDLAETCVFAKQSPGPILC 79          
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A078KVC2_9FIRM (Uncharacterized protein n=1 Tax=[Clostridium] cellulosi TaxID=29343 RepID=A0A078KVC2_9FIRM)

HSP 1 Score: 86.3 bits (212), Expect = 1.400e-19
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 LRPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
            +R C  +      ++LP+KEFRYLRTVIVTA  YRG           +R RAGVSPYT S +LAETCVF KQSP PILC
Sbjct:    1 MRQCPDRYTIRAGQNLPDKEFRYLRTVIVTAAVYRGFGSKLSLLPLTFRHRAGVSPYTSSFDLAETCVFAKQSPGPILC 79          
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A2S2NGY3_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NGY3_SCHGA)

HSP 1 Score: 83.2 bits (204), Expect = 6.100e-19
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   52 PEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILCQK 246
            P+KEFRYLRTVIVTA  YRG           +R RAGV PYT SC+ AE CVF+KQSPPP LC +
Sbjct:    1 PDKEFRYLRTVIVTAAVYRGFNSELAPLLLTFRHRAGVRPYTSSCDFAEPCVFSKQSPPPGLCPR 65          
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A6A5L965_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L965_LUPAL)

HSP 1 Score: 88.6 bits (218), Expect = 1.120e-18
Identity = 47/84 (55.95%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 SLRPCWRQRGXXXX----RDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
            SL  CWRQRG        R+LP+KEFRYLRTVIVTA  Y G           ++ RAGV PYT SC+ AE CVF+KQS PP LC
Sbjct:  424 SLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLC 507          
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A6A5LBS9_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LBS9_LUPAL)

HSP 1 Score: 85.5 bits (210), Expect = 9.060e-18
Identity = 46/84 (54.76%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 SLRPCWRQRGXXXX----RDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
            SL  CWRQRG        R+LP+KEFRYLRTVIVTA  Y G +         ++ RAGV PYT  C  AE CVF+KQS PP LC
Sbjct:  306 SLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFSSELAPLPLTFQHRAGVRPYTSYCYFAEPCVFDKQSLPPGLC 389          
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: F3QKQ7_9BURK (Uncharacterized protein n=1 Tax=Parasutterella excrementihominis YIT 11859 TaxID=762966 RepID=F3QKQ7_9BURK)

HSP 1 Score: 79.3 bits (194), Expect = 1.030e-17
Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    7 RPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPIL 237
            R C  +      R+LP+KEFRYLRTVIVTA  Y            I++ RAG++PYT S + AE CVFNKQS PPIL
Sbjct:    6 RQCGHRYAIRAGRNLPDKEFRYLRTVIVTAAVYWDFDQGLSPHQLIFQHRAGITPYTSSFDFAECCVFNKQSQPPIL 82          
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A0P6BEK3_9CRUS (Uncharacterized protein n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6BEK3_9CRUS)

HSP 1 Score: 79.3 bits (194), Expect = 4.540e-17
Identity = 42/79 (53.16%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    4 LRPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
            LR C  +      R+LP+KEFRYLRTV VTA  Y G    R+   F ++ RAGVSPYT     AETCVF KQSP P+ C
Sbjct:   38 LRHCPDRYAFRAGRNLPDKEFRYLRTVTVTAAVYWGFGSERQLFPFTFQHRAGVSPYTSPFGFAETCVFGKQSPGPLHC 116          
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A061S5B2_9CHLO (Cell wall-associated hydrolase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S5B2_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 5.610e-17
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   43 RDLPEKEFRYLRTVIVTAVAYRGL--TLMRKHQ--SFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
            R+LP+KEFRYLRTVIVTA  +RG    L +K    SF +R  AGVSP+T S +LAETCVF KQSP P  C
Sbjct:   22 RNLPDKEFRYLRTVIVTAAVHRGFGHQLFQKESPTSFTFRHWAGVSPHTLSYDLAETCVFGKQSPGPGHC 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J8BG93_BETVV1.610e-2157.14Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
A7VSA7_9FIRM4.330e-2056.96Uncharacterized protein n=1 Tax=[Clostridium] lept... [more]
A0A1C6I9E2_9FIRM8.820e-2058.23Uncharacterized protein n=1 Tax=uncultured Ruminoc... [more]
A0A078KVC2_9FIRM1.400e-1956.96Uncharacterized protein n=1 Tax=[Clostridium] cell... [more]
A0A2S2NGY3_SCHGA6.100e-1961.54Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]
A0A6A5L965_LUPAL1.120e-1855.95Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5LBS9_LUPAL9.060e-1854.76Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
F3QKQ7_9BURK1.030e-1751.95Uncharacterized protein n=1 Tax=Parasutterella exc... [more]
A0A0P6BEK3_9CRUS4.540e-1753.16Uncharacterized protein n=1 Tax=Daphnia magna TaxI... [more]
A0A061S5B2_9CHLO5.610e-1761.43Cell wall-associated hydrolase n=1 Tax=Tetraselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119859contigH-elongata_contig119859:590..838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score87.4
Seed ortholog evalue3.4e-15
Seed eggNOG ortholog428125.CLOLEP_01448
EggNOG free text desc.non supervised orthologous group
EggNOG OGs1V6N4@1239,24K1H@186801,2B9ZZ@1,323DM@2,3WJW5@541000
COG Functional cat.S
Best tax levelRuminococcaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.2030385-CDS-H-elongata_contig119859:589..8381622929702.2030385-CDS-H-elongata_contig119859:589..838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119859 590..838 -
1691679124.7416503-CDS-H-elongata_contig119859:589..8381691679124.7416503-CDS-H-elongata_contig119859:589..838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119859 590..838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119859.1532.1prot_H-elongata_contig119859.1532.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119859 590..838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119859.1532.1

>prot_H-elongata_contig119859.1532.1 ID=prot_H-elongata_contig119859.1532.1|Name=mRNA_H-elongata_contig119859.1532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
SLRPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYR
PRAGVSPYTYSCELAETCVFNKQSPPPILCQK*
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mRNA from alignment at H-elongata_contig119859:590..838-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119859.1532.1 ID=mRNA_H-elongata_contig119859.1532.1|Name=mRNA_H-elongata_contig119859.1532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig119859:590..838- (Himanthalia elongata Himel1 dioecious)
TCACTGAGACCCTGTTGGAGACAGCGGGGAANNNNNNNNNNTCGGGACTT ACCCGAAAAGGAATTTCGCTACCTTAGGACCGTCATAGTTACAGCCGTCG CTTACCGGGGTTTGACTTTAATGCGTAAACACCAAAGCTTTATCTACCGG CCCCGGGCAGGTGTCAGTCCCTATACATACTCTTGCGAGTTAGCAGAGAC CTGTGTTTTTAATAAACAGTCGCCACCCCCGATTTTGTGCCAAAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig119859:590..838-

>mRNA_H-elongata_contig119859.1532.1 ID=mRNA_H-elongata_contig119859.1532.1|Name=mRNA_H-elongata_contig119859.1532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig119859:590..838- (Himanthalia elongata Himel1 dioecious)
TCACTGAGACCCTGTTGGAGACAGCGGGGAANNNNNNNNNNTCGGGACTT
ACCCGAAAAGGAATTTCGCTACCTTAGGACCGTCATAGTTACAGCCGTCG
CTTACCGGGGTTTGACTTTAATGCGTAAACACCAAAGCTTTATCTACCGG
CCCCGGGCAGGTGTCAGTCCCTATACATACTCTTGCGAGTTAGCAGAGAC
CTGTGTTTTTAATAAACAGTCGCCACCCCCGATTTTGTGCCAAAAATAAT
CACTGAGACCCTGTTGGAGACAGCGGGGAANNNNNNNNNNTCGGGACTTA
CCCGAAAAGGAATTTCGCTACCTTAGGACCGTCATAGTTACAGCCGTCGC
TTACCGGGGTTTGACTTTAATGCGTAAACACCAAAGCTTTATCTACCGGC
CCCGGGCAGGTGTCAGTCCCTATACATACTCTTGCGAGTTAGCAGAGACC
TGTGTTTTTAATAAACAGTCGCCACCCCCGATTTTGTGCCAAAAATAA
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