mRNA_H-elongata_contig119859.1532.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A0J8BG93_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BG93_BETVV) HSP 1 Score: 90.1 bits (222), Expect = 1.610e-21 Identity = 48/84 (57.14%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 SLRPCWRQRGXXXX----RDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
SL CWRQRG R+LP+KEFRYLRTVIVTA YRG + +R RAGV PYT S + AE CVF KQ PPP LC
Sbjct: 11 SLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSVLAPLLLTFRHRAGVRPYTSSYDFAEPCVFVKQLPPPGLC 94
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A7VSA7_9FIRM (Uncharacterized protein n=1 Tax=[Clostridium] leptum DSM 753 TaxID=428125 RepID=A7VSA7_9FIRM) HSP 1 Score: 87.0 bits (214), Expect = 4.330e-20 Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 4 LRPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
+R C + R+LP+KEFRYLRTVIVTA Y G M H ++ RAGVSPYT S +LAETCVF KQSP PI C
Sbjct: 1 MRQCPDRYTIRAGRNLPDKEFRYLRTVIVTAAVYWGFNSMLAHLLLTFQHRAGVSPYTSSFDLAETCVFAKQSPGPIHC 79
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A1C6I9E2_9FIRM (Uncharacterized protein n=1 Tax=uncultured Ruminococcus sp. TaxID=165186 RepID=A0A1C6I9E2_9FIRM) HSP 1 Score: 87.8 bits (216), Expect = 8.820e-20 Identity = 46/79 (58.23%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 4 LRPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
+R C + R+LP+KEFRYLRTVIVTA YRG +R RAGVSPYT S +LAETCVF KQSP PILC
Sbjct: 1 MRQCPDRYTIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSELSLLLLTFRHRAGVSPYTSSFDLAETCVFAKQSPGPILC 79
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A078KVC2_9FIRM (Uncharacterized protein n=1 Tax=[Clostridium] cellulosi TaxID=29343 RepID=A0A078KVC2_9FIRM) HSP 1 Score: 86.3 bits (212), Expect = 1.400e-19 Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 4 LRPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
+R C + ++LP+KEFRYLRTVIVTA YRG +R RAGVSPYT S +LAETCVF KQSP PILC
Sbjct: 1 MRQCPDRYTIRAGQNLPDKEFRYLRTVIVTAAVYRGFGSKLSLLPLTFRHRAGVSPYTSSFDLAETCVFAKQSPGPILC 79
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A2S2NGY3_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NGY3_SCHGA) HSP 1 Score: 83.2 bits (204), Expect = 6.100e-19 Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 52 PEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILCQK 246
P+KEFRYLRTVIVTA YRG +R RAGV PYT SC+ AE CVF+KQSPPP LC +
Sbjct: 1 PDKEFRYLRTVIVTAAVYRGFNSELAPLLLTFRHRAGVRPYTSSCDFAEPCVFSKQSPPPGLCPR 65
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A6A5L965_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L965_LUPAL) HSP 1 Score: 88.6 bits (218), Expect = 1.120e-18 Identity = 47/84 (55.95%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 SLRPCWRQRGXXXX----RDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
SL CWRQRG R+LP+KEFRYLRTVIVTA Y G ++ RAGV PYT SC+ AE CVF+KQS PP LC
Sbjct: 424 SLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLC 507
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A6A5LBS9_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LBS9_LUPAL) HSP 1 Score: 85.5 bits (210), Expect = 9.060e-18 Identity = 46/84 (54.76%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 1 SLRPCWRQRGXXXX----RDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
SL CWRQRG R+LP+KEFRYLRTVIVTA Y G + ++ RAGV PYT C AE CVF+KQS PP LC
Sbjct: 306 SLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFSSELAPLPLTFQHRAGVRPYTSYCYFAEPCVFDKQSLPPGLC 389
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: F3QKQ7_9BURK (Uncharacterized protein n=1 Tax=Parasutterella excrementihominis YIT 11859 TaxID=762966 RepID=F3QKQ7_9BURK) HSP 1 Score: 79.3 bits (194), Expect = 1.030e-17 Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 7 RPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPIL 237
R C + R+LP+KEFRYLRTVIVTA Y I++ RAG++PYT S + AE CVFNKQS PPIL
Sbjct: 6 RQCGHRYAIRAGRNLPDKEFRYLRTVIVTAAVYWDFDQGLSPHQLIFQHRAGITPYTSSFDFAECCVFNKQSQPPIL 82
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A0P6BEK3_9CRUS (Uncharacterized protein n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6BEK3_9CRUS) HSP 1 Score: 79.3 bits (194), Expect = 4.540e-17 Identity = 42/79 (53.16%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 4 LRPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
LR C + R+LP+KEFRYLRTV VTA Y G R+ F ++ RAGVSPYT AETCVF KQSP P+ C
Sbjct: 38 LRHCPDRYAFRAGRNLPDKEFRYLRTVTVTAAVYWGFGSERQLFPFTFQHRAGVSPYTSPFGFAETCVFGKQSPGPLHC 116
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Match: A0A061S5B2_9CHLO (Cell wall-associated hydrolase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S5B2_9CHLO) HSP 1 Score: 77.8 bits (190), Expect = 5.610e-17 Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 43 RDLPEKEFRYLRTVIVTAVAYRGL--TLMRKHQ--SFIYRPRAGVSPYTYSCELAETCVFNKQSPPPILC 240
R+LP+KEFRYLRTVIVTA +RG L +K SF +R AGVSP+T S +LAETCVF KQSP P C
Sbjct: 22 RNLPDKEFRYLRTVIVTAAVHRGFGHQLFQKESPTSFTFRHWAGVSPHTLSYDLAETCVFGKQSPGPGHC 91 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119859.1532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119859.1532.1 >prot_H-elongata_contig119859.1532.1 ID=prot_H-elongata_contig119859.1532.1|Name=mRNA_H-elongata_contig119859.1532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp SLRPCWRQRGXXXXRDLPEKEFRYLRTVIVTAVAYRGLTLMRKHQSFIYRback to top mRNA from alignment at H-elongata_contig119859:590..838- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119859.1532.1 ID=mRNA_H-elongata_contig119859.1532.1|Name=mRNA_H-elongata_contig119859.1532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig119859:590..838- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119859:590..838- >mRNA_H-elongata_contig119859.1532.1 ID=mRNA_H-elongata_contig119859.1532.1|Name=mRNA_H-elongata_contig119859.1532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig119859:590..838- (Himanthalia elongata Himel1 dioecious)back to top |