mRNA_H-elongata_contig119805.1525.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119805.1525.1
Unique NamemRNA_H-elongata_contig119805.1525.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119805.1525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119805contigH-elongata_contig119805:84..600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size517
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119805.1525.1prot_H-elongata_contig119805.1525.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119805 111..467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.5611577-UTR-H-elongata_contig119805:83..1101622929701.5611577-UTR-H-elongata_contig119805:83..110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119805 84..110 +
1691679124.473615-UTR-H-elongata_contig119805:83..1101691679124.473615-UTR-H-elongata_contig119805:83..110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119805 84..110 +
1622929701.5931644-UTR-H-elongata_contig119805:467..6001622929701.5931644-UTR-H-elongata_contig119805:467..600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119805 468..600 +
1691679124.4930227-UTR-H-elongata_contig119805:467..6001691679124.4930227-UTR-H-elongata_contig119805:467..600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119805 468..600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.5790367-CDS-H-elongata_contig119805:110..4671622929701.5790367-CDS-H-elongata_contig119805:110..467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119805 111..467 +
1691679124.4833307-CDS-H-elongata_contig119805:110..4671691679124.4833307-CDS-H-elongata_contig119805:110..467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119805 111..467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119805.1525.1

>prot_H-elongata_contig119805.1525.1 ID=prot_H-elongata_contig119805.1525.1|Name=mRNA_H-elongata_contig119805.1525.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MQWLFANGCPWGASVCASAALGGHLEALQWAREQQCPWGEKTCSNAALNG
HLEVLQWARRQQCPWDDTTCNNAALGGHLGVLKWARSQSCPWSELEQRSA
GWTPGVSKVDKVRRLSVA*
back to top

mRNA from alignment at H-elongata_contig119805:84..600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119805.1525.1 ID=mRNA_H-elongata_contig119805.1525.1|Name=mRNA_H-elongata_contig119805.1525.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=517bp|location=Sequence derived from alignment at H-elongata_contig119805:84..600+ (Himanthalia elongata Himel1 dioecious)
GCCACCCGTGGTGGGCACGTCATTGTTATGCAGTGGTTATTCGCCAATGG
CTGTCCATGGGGTGCCAGTGTATGTGCGTCGGCTGCTTTGGGTGGACACC
TAGAGGCCCTGCAGTGGGCAAGAGAGCAACAGTGCCCTTGGGGCGAAAAG
ACTTGCTCAAATGCCGCCCTAAATGGGCACTTGGAGGTGCTGCAATGGGC
ACGGAGACAACAATGCCCCTGGGACGACACGACTTGCAACAATGCCGCTT
TGGGCGGCCACCTGGGGGTGTTAAAGTGGGCTCGGTCACAGTCTTGTCCA
TGGAGCGAACTGGAGCAACGCAGCGCTGGGTGGACACCTGGAGTTTCTAA
AGTGGATAAAGTTCGAAGGCTGTCCGTGGCGTGAGGACACTTGCAGCGCT
GCTGCGAAGGGTGGGCACTTGGAAGTACTGAGATGGGCAAGAGCGGAGCA
ATGTCCTTGGGATACGAATACTACCGAGCAGGCCTCCCGACGTAGACACA
TGGAAATCTTCAAGTGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig119805:84..600+

>mRNA_H-elongata_contig119805.1525.1 ID=mRNA_H-elongata_contig119805.1525.1|Name=mRNA_H-elongata_contig119805.1525.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig119805:84..600+ (Himanthalia elongata Himel1 dioecious)
ATGCAGTGGTTATTCGCCAATGGCTGTCCATGGGGTGCCAGTGTATGTGC
GTCGGCTGCTTTGGGTGGACACCTAGAGGCCCTGCAGTGGGCAAGAGAGC
AACAGTGCCCTTGGGGCGAAAAGACTTGCTCAAATGCCGCCCTAAATGGG
CACTTGGAGGTGCTGCAATGGGCACGGAGACAACAATGCCCCTGGGACGA
CACGACTTGCAACAATGCCGCTTTGGGCGGCCACCTGGGGGTGTTAAAGT
GGGCTCGGTCACAGTCTTGTCCATGGAGCGAACTGGAGCAACGCAGCGCT
GGGTGGACACCTGGAGTTTCTAAAGTGGATAAAGTTCGAAGGCTGTCCGT
GGCGTGAATGCAGTGGTTATTCGCCAATGGCTGTCCATGGGGTGCCAGTG
TATGTGCGTCGGCTGCTTTGGGTGGACACCTAGAGGCCCTGCAGTGGGCA
AGAGAGCAACAGTGCCCTTGGGGCGAAAAGACTTGCTCAAATGCCGCCCT
AAATGGGCACTTGGAGGTGCTGCAATGGGCACGGAGACAACAATGCCCCT
GGGACGACACGACTTGCAACAATGCCGCTTTGGGCGGCCACCTGGGGGTG
TTAAAGTGGGCTCGGTCACAGTCTTGTCCATGGAGCGAACTGGAGCAACG
CAGCGCTGGGTGGACACCTGGAGTTTCTAAAGTGGATAAAGTTCGAAGGC
TGTCCGTGGCGTGA
back to top