mRNA_H-elongata_contig119733.1520.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI) HSP 1 Score: 178 bits (451), Expect = 1.310e-50 Identity = 93/184 (50.54%), Postives = 125/184 (67.93%), Query Frame = 1
Query: 1 WLKHDVNMVTSAPEVEGFKKWPFVGLHIRRGDKVRVDE-ANYHACEEYLAAAVNYLEGTSAPLSVNDVRGIWVASDDSTVLDEVRAAAPSYFPNVDNSTVVLASGGVTGGPDPGGIINTRTEKQSYAQVVYLIADLQHLVDASVFVGTFSSNVGRLVAVLREALAKKKEDSTINLDRNAWNPGR 549
WL+ DV+ VT A + F++ PF+GLHIRRGDKV A+ + C+EYL AAV +LEG + LSV D++GIWVASD+ V+ +V+ AP Y PNV + ASGGV GGP+ G TRT+K++YA VY +ADLQ L A +FVGTFSSN+GRL+ +LRE++ K S +++D W GR
Sbjct: 264 WLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCKEYLEAAVEFLEGDDSQLSVGDIKGIWVASDEPKVIAKVKQIAPDYLPNVSEDDIFWASGGVEGGPEIGRTA-TRTDKETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSID-GPWRAGR 445
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.560e-50 Identity = 91/183 (49.73%), Postives = 122/183 (66.67%), Query Frame = 1
Query: 1 WLKHDVNMVTSAPEVEGFKKWPFVGLHIRRGDKVRVDEANYHACEEYLAAAVNYLEGTSAPLSVNDVRGIWVASDDSTVLDEVRAAAPSYFPNVDNSTVVLASGGVTGGPDPGGIINTRTEKQSYAQVVYLIADLQHLVDASVFVGTFSSNVGRLVAVLREALAKKKEDSTINLDRNAWNPGR 549
WL+ DV+ VT A + F++ PF+GLHIRRGDKV EA+ + CEEYL AV +LEG + LSV D++GIWVASD+ V+ +V+ A Y PNV + ASGGV GGP+ TRT++++YA VY ADLQ L A +FVGTFSSN+GRL+ +LRE++ K S +++D W GR
Sbjct: 257 WLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCEEYLETAVEFLEGNDSQLSVGDIKGIWVASDEPKVIAKVKQIAQDYLPNVSEGDIFWASGGVEGGPEIERTA-TRTDQETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRESIGLKDRASAVSID-GPWRAGR 437
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE) HSP 1 Score: 148 bits (373), Expect = 1.200e-40 Identity = 80/179 (44.69%), Postives = 108/179 (60.34%), Query Frame = 1
Query: 1 WLKHDVNMVTSAPEVEGFKKWPFVGLHIRRGDKVRVDEANYHACEEYLAAAVNYLEGTSAPLSVNDVRGIWVASDDSTVLDEVRAAAPSYFPNVDNSTVVLASGGVTGGPDPGGIINTRTEKQSYAQVVYLIADLQHLVDASVFVGTFSSNVGRLVAVLREALAKKKEDSTINLDRNAW 537
WL+ DV P+++ F++ PFVGLH+RRGDKV EA +EYL+AA + + A D+ IWVASDD V++EVRA A YFPNV + +V SGG GG + T T+ Q Y V + ADL+ L S+FVGT++SNV RLVA+LRE + DS I+LD+ +
Sbjct: 116 WLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEAQKVETKEYLSAAARFFDN-KASQDKQDIEAIWVASDDHKVVEEVRAIARQYFPNVLDEDIVWVSGGARGGA-----VTTHTKSQGYQGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLREGIHGHARDSCISLDKTEF 288
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI) HSP 1 Score: 117 bits (292), Expect = 5.630e-30 Identity = 65/161 (40.37%), Postives = 98/161 (60.87%), Query Frame = 1
Query: 67 FVGLHIRRGDKVRVDEANYHACEEYLAAAVNYLEGTSAPLSVNDVRGIWVASDDSTVLDEVRAAAPSYFPNVDNSTVVLASGGVTGGPDPGGIINTRTEKQSYAQVVYLIADLQHLVDASVFVGTFSSNVGRLVAVLREALAKKKEDSTINLDRNAWNPGR 549
+VGLHIRR DK +E + YLA AVNYL + ++ ++ GIWV+SDD V DEV+ A +FP + + V+ +GG P ++ ++ SY +VYL A+L+ L ++VF GTFSSNVGR+VA++R+ L ++S +++D AW GR
Sbjct: 6 YVGLHIRRTDKA--NEVQPVKTKAYLAKAVNYLASPTNDMAATNITGIWVSSDDEAVFDEVKQLASEFFPGIAPNAVLYVTGG-----KPVQLMRGAADRNSYEAMVYLRAELEMLAGSAVFSGTFSSNVGRMVALMRKTL-NMPDESAVSVDFPAWFAGR 158
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Match: D7FU71_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU71_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 4.150e-15 Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 1
Query: 1 WLKHDVNMVTSAPEVEGFKKWPFVGLHIRRGDKVRVDEANYHACEEYLAAAVNYLEGTSAPLS-VNDVRGIWVASDDSTVLDEVRAAAPSYFPNVDNSTVV 300
W K D + + +V + +V +H+RRGDKV + EA+ E YL AA + L+ ++ + N + G+WV+SDD +VL EV+A A +YF NV + VV
Sbjct: 59 WFKEDTDAMLLQSDVHSVRSVRYVAIHVRRGDKVTLQEASRTEVEVYLQAAASILQNSTGSVDGPNSIGGLWVSSDDPSVLPEVKALASTYFANVQDDRVV 159
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Match: A0A5J4YU31_PORPP (Alpha-(1,6)-fucosyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU31_PORPP) HSP 1 Score: 68.2 bits (165), Expect = 4.300e-10 Identity = 63/191 (32.98%), Postives = 96/191 (50.26%), Query Frame = 1
Query: 4 LKHDVNMVTSA--PEVEGFKKWPFVGLHIRRGDKVRVDEANYHACEEYLAAAVNYLEGTSAPLSVNDVRGIWVASDDSTVLDEV------RAAAPSYFPNVDNSTVVLASGGVTGGPDPGGIINTRTEKQ--SYAQVVYLIADLQHLVDASVFVGTFSSNVGRLVAVLREALAKKKEDSTINLDRNAWNPG 546
L+ +V M A + +G + ++G+HIRRGDK + +A Y +Y+ A + + D+R ++V SDD V++E+ R AA S +V S G + N R++ + L+ +L L AS FVGTFSSNVGRLV LR+A A + ++I+LD AW+PG
Sbjct: 262 LQRNVEMQLDALLVQADGSRLQGYMGVHIRRGDKYK--DAPYVPIAQYVNAIM-------WAANRYDLRMVYVCSDDFAVINELKDMVRARTAATSL-----RLAIVDTSQSSREGHEQRLSNNARSQNELVGVEMTAQLLLELSLLQRASFFVGTFSSNVGRLVVALRDARAPQ---TSISLD-TAWSPG 434
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Match: A0A7M7M335_VARDE (GT23 domain-containing protein n=4 Tax=Varroa TaxID=62624 RepID=A0A7M7M335_VARDE) HSP 1 Score: 67.0 bits (162), Expect = 1.110e-9 Identity = 51/161 (31.68%), Postives = 74/161 (45.96%), Query Frame = 1
Query: 7 KHDVNMVTSAPEVEGFKKWPFVGLHIRRGDKVRVDEANYHACEEYLAAAVNYLEGTSAPLSVNDVRGIWVASDDSTVLDEVRAAAPSYFPNVDNSTVVLASGGVTGGPDPGGIINTRTEKQSYAQVVYLIADLQHLVDASVFVGTFSSNVGRLVAVLREAL 489
K + + KK P+VG+H+RR DK+ EA+YH EEY++ A+ Y + D R +++ASDD TVL + R+ P+Y D AS + R +S V IADL L + V TFSS V R+ + + L
Sbjct: 316 KETAAFLKQVEQASAIKK-PYVGIHVRRTDKIGT-EASYHGIEEYMSWAIEYFDKYELAHGRLDKRRVYIASDDDTVLKDARSLYPNYEFFGDQKIAASAS------------LKNRYTVESLRGV---IADLHMLSMSDHLVCTFSSQVCRVAFEMMQLL 459
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Match: A0A1W4XCQ9_AGRPL (Alpha-(1,6)-fucosyltransferase n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4XCQ9_AGRPL) HSP 1 Score: 66.2 bits (160), Expect = 2.070e-9 Identity = 49/152 (32.24%), Postives = 76/152 (50.00%), Query Frame = 1
Query: 22 MVTSAPEVEGFKKWPFVGLHIRRGDKVRVDEANYHACEEYLAAAVNYLEGTSAPLSVNDVRGIWVASDDSTVLDEVRAAAPSYF----PNVDNSTVVLASGGVTGGPDPGGIINTRTEKQSYAQVVYLIADLQHLVDASVFVGTFSSNVGRL 465
++ A + F K P VG+H+RR DK+ EA++H+ EEY+ A +Y + +S ++VR +++ASDD TV+ E R P+Y P + +S V TR + S + I+D+ L + V TFSS V RL
Sbjct: 335 LLNDATKKMNFAK-PVVGIHVRRTDKIGT-EASFHSIEEYMTAVEDYYDALD--MSEDNVRRVYIASDDPTVITEAREKYPNYEILGDPKISSSAAV----------------ETRYTEDSLKGI---ISDIHFLSQSDYLVCTFSSQVCRL 463
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Match: A0A0K0F205_STRVS (Alpha-(1,6)-fucosyltransferase (inferred by orthology to a human protein) n=2 Tax=Strongyloides TaxID=6247 RepID=A0A0K0F205_STRVS) HSP 1 Score: 66.2 bits (160), Expect = 2.070e-9 Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 1
Query: 52 FKKWPFVGLHIRRGDKVRVDEANYHACEEYLAAAVNYLEGTSAPLSVNDVRGIWVASDDSTVLDEVRAAAPSYFPNVDNSTVVLASGGVTGGPDPGGIINTRTEKQSYAQVVYLIADLQHLVDASVFVGTFSSNVGRLVAVLREALAKKKEDSTIN 519
F+K P VG+H+RR DK+ EA++H +EY+ A + + R +++A+DDSTV+D++R P+Y D + A + R E S + I D++ L S +GTFSS V R+ L + + ++D+ N
Sbjct: 347 FEKSPIVGIHVRRTDKIGT-EASFHDVKEYMNHAEIFFREKEIEMETQISRKVFIATDDSTVIDDLRKKYPNYTFYGDENVANNAG------------VGKRYEDDSLHGI---IKDIRFLSKCSFIIGTFSSQVSRMAYELMQV--ESQDDAGYN 484
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Match: R7QMX9_CHOCR (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMX9_CHOCR) HSP 1 Score: 64.3 bits (155), Expect = 2.320e-9 Identity = 56/160 (35.00%), Postives = 81/160 (50.62%), Query Frame = 1
Query: 67 FVGLHIRRGDKVRVDEANYHACEEYLAAAVNYLEGTSAPLSVNDVRGIWVASDDSTVLDEVRAAAPSYFPNVDNSTVVLASGGVTGGPDPGGIINTRTEKQSYAQVVYLIADLQHLVDASVFVGTFSSNVGRLVAVLREALAKKKEDSTINLDRNAWNPG 546
+VG+H+RRGDK + E Y AAAV + G + ++VA+DD + +R V + GG D N K++Y +VV L+A+++ L A VFVGTFSSN+GRLV VLRE E ++++LD + W PG
Sbjct: 41 YVGVHVRRGDKSK--EVADVPLWRY-AAAVRAVSG--------EEMAVFVAADDGASVRGLRQLLAG------RKVVAIRGAEGRGGHDQLAT-NRGYMKENYGRVVELLAEVEALRGAKVFVGTFSSNLGRLVHVLREG----DERNSVSLD-DRWAPG 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119733.1520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119733.1520.1 >prot_H-elongata_contig119733.1520.1 ID=prot_H-elongata_contig119733.1520.1|Name=mRNA_H-elongata_contig119733.1520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp MVTSAPEVEGFKKWPFVGLHIRRGDKVRVDEANYHACEEYLAAAVNYLEGback to top mRNA from alignment at H-elongata_contig119733:3..1149+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119733.1520.1 ID=mRNA_H-elongata_contig119733.1520.1|Name=mRNA_H-elongata_contig119733.1520.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1147bp|location=Sequence derived from alignment at H-elongata_contig119733:3..1149+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119733:3..1149+ >mRNA_H-elongata_contig119733.1520.1 ID=mRNA_H-elongata_contig119733.1520.1|Name=mRNA_H-elongata_contig119733.1520.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig119733:3..1149+ (Himanthalia elongata Himel1 dioecious)back to top |