mRNA_H-elongata_contig119609.1511.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119609.1511.1
Unique NamemRNA_H-elongata_contig119609.1511.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119609.1511.1 vs. uniprot
Match: A0A6H5JEQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 6.100e-25
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:  103 PASEESMSIA-LASVPHGASSLPAAAVPTVLERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMK 291
            P    SMS+A LAS+PHG S+LPA+AVPTVLERFPGFVRCVMDIAPEVVGWVIGR+GAHIKEMK
Sbjct:  252 PDHHSSMSMAALASLPHGTSALPASAVPTVLERFPGFVRCVMDIAPEVVGWVIGRNGAHIKEMK 315
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BLAST of mRNA_H-elongata_contig119609.1511.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.160e-24
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:  130 ALASVPHGASSLPAAAVPTVLERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMK 291
            ALAS+PHGAS+LPA+AVPTVLERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMK
Sbjct:    5 ALASLPHGASALPASAVPTVLERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMK 58
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BLAST of mRNA_H-elongata_contig119609.1511.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.550e-15
Identity = 35/39 (89.74%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:  175 AVPTVLERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMK 291
            A+PTVLE+FPGFVRCV+DIAPEVVGWVIGRSG+HIKEMK
Sbjct:  287 AIPTVLEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMK 325
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BLAST of mRNA_H-elongata_contig119609.1511.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.970e-11
Identity = 41/89 (46.07%), Postives = 45/89 (50.56%), Query Frame = 1 
Query:  145 PHGASSLPAAAVPTVLERFPGFVRCVMDIAPE----------------------------------------VVGWVIGRSGAHIKEMK 291
            P  A S+PA AVPTVLE+FPGFVRCV+DIAPE                                        VVGWVIGRSG+HIKEMK
Sbjct:  247 PQVAPSMPAPAVPTVLEKFPGFVRCVVDIAPEGEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVGWVIGRSGSHIKEMK 335
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BLAST of mRNA_H-elongata_contig119609.1511.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.600e-5
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:  190 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMK 291
            ++R  GFVRC MDI  EVVGWVIG+SG+ IK++K
Sbjct:   44 IKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLK 77
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BLAST of mRNA_H-elongata_contig119609.1511.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.410e-5
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:  181 PTVLERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMK 291
            P  ++R  GF+RC MDI  EVVGWVIGR+G+ IK++K
Sbjct:   56 PYSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLK 92
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BLAST of mRNA_H-elongata_contig119609.1511.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 3.510e-5
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:  190 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMK 291
            ++R  GFVRC MDI  EVVGWVIG++G+ IK+MK
Sbjct:   55 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMK 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119609.1511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JEQ9_9PHAE6.100e-2582.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHT5_ECTSI2.160e-2494.44SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YRS0_9STRA2.550e-1589.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJQ9_9STRA3.970e-1146.07SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835ZGS8_9STRA2.600e-564.71Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YT56_9STRA3.410e-559.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FQB1_ECTSI3.510e-564.71SAM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119609contigH-elongata_contig119609:1642..1932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size292
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.3588402-CDS-H-elongata_contig119609:1641..19321622929700.3588402-CDS-H-elongata_contig119609:1641..1932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119609 1642..1932 +
1691679124.0185502-CDS-H-elongata_contig119609:1641..19321691679124.0185502-CDS-H-elongata_contig119609:1641..1932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119609 1642..1932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119609.1511.1prot_H-elongata_contig119609.1511.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119609 1642..1932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119609.1511.1

>prot_H-elongata_contig119609.1511.1 ID=prot_H-elongata_contig119609.1511.1|Name=mRNA_H-elongata_contig119609.1511.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
QQVRPGSSASGSDDGLMRRVGGNGGVSGPWGTTVPASEESMSIALASVPH
GASSLPAAAVPTVLERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMK
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mRNA from alignment at H-elongata_contig119609:1642..1932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119609.1511.1 ID=mRNA_H-elongata_contig119609.1511.1|Name=mRNA_H-elongata_contig119609.1511.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig119609:1642..1932+ (Himanthalia elongata Himel1 dioecious)
CAGCAAGTTCGGCCAGGTTCATCTGCCTCAGGATCAGACGATGGCTTGAT
GCGCCGAGTTGGGGGAAATGGCGGAGTCAGCGGACCGTGGGGTACCACCG
TGCCTGCTAGCGAGGAGTCGATGTCGATAGCTCTCGCTTCTGTTCCTCAC
GGAGCAAGCTCTCTACCCGCTGCGGCTGTGCCAACAGTCCTTGAGCGATT
TCCTGGGTTCGTACGCTGCGTCATGGACATTGCCCCTGAAGTTGTCGGCT
GGGTCATCGGCAGGAGCGGGGCTCACATCAAGGAAATGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig119609:1642..1932+

>mRNA_H-elongata_contig119609.1511.1 ID=mRNA_H-elongata_contig119609.1511.1|Name=mRNA_H-elongata_contig119609.1511.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig119609:1642..1932+ (Himanthalia elongata Himel1 dioecious)
CAGCAAGTTCGGCCAGGTTCATCTGCCTCAGGATCAGACGATGGCTTGAT
GCGCCGAGTTGGGGGAAATGGCGGAGTCAGCGGACCGTGGGGTACCACCG
TGCCTGCTAGCGAGGAGTCGATGTCGATAGCTCTCGCTTCTGTTCCTCAC
GGAGCAAGCTCTCTACCCGCTGCGGCTGTGCCAACAGTCCTTGAGCGATT
TCCTGGGTTCGTACGCTGCGTCATGGACATTGCCCCTGAAGTTGTCGGCT
GGGTCATCGGCAGGAGCGGGGCTCACATCAAGGAAATGAAGCAGCAAGTT
CGGCCAGGTTCATCTGCCTCAGGATCAGACGATGGCTTGATGCGCCGAGT
TGGGGGAAATGGCGGAGTCAGCGGACCGTGGGGTACCACCGTGCCTGCTA
GCGAGGAGTCGATGTCGATAGCTCTCGCTTCTGTTCCTCACGGAGCAAGC
TCTCTACCCGCTGCGGCTGTGCCAACAGTCCTTGAGCGATTTCCTGGGTT
CGTACGCTGCGTCATGGACATTGCCCCTGAAGTTGTCGGCTGGGTCATCG
GCAGGAGCGGGGCTCACATCAAGGAAATGAAG
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