mRNA_H-elongata_contig118857.1458.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Match: D7FUP3_ECTSI (Proline--tRNA ligase, central part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP3_ECTSI) HSP 1 Score: 213 bits (543), Expect = 1.220e-64 Identity = 108/142 (76.06%), Postives = 120/142 (84.51%), Query Frame = 1
Query: 1 RDLILLPPWAIYGTVMDRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFARAFDVYYQTKEESRELVWATSWGVTTRLIGAMIMTHSDDLGLRLPPAVAPKQASVVIVPITKGSGEDADLVGEAVDAAAAELKAAGMRVKV 426
R+ + LP + +RFAGA+ETYTIEALMQNGWALQSGTSHFLGQNFARAF+VYYQT +E RELVWATSWGVTTRL+GAM+MTHSDD GLRLPPAVAPKQ VVIVPITKG GED DLV +AVD +LKAAG+RVKV
Sbjct: 288 RETLALPTVMGVKSPKERFAGADETYTIEALMQNGWALQSGTSHFLGQNFARAFEVYYQTPDEKRELVWATSWGVTTRLMGAMVMTHSDDFGLRLPPAVAPKQ--VVIVPITKGPGEDTDLVNKAVDGVVDQLKAAGVRVKV 427
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Match: A0A835Z2K2_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K2_9STRA) HSP 1 Score: 204 bits (520), Expect = 4.430e-60 Identity = 105/144 (72.92%), Postives = 119/144 (82.64%), Query Frame = 1
Query: 1 RDLILLPPWAIYGTVMDRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFARAFDVYYQTKEESRELVWATSWGVTTRLIGAMIMTHSDDLGLR--LPPAVAPKQASVVIVPITKGSGEDADLVGEAVDAAAAELKAAGMRVKV 426
+D++ LP + M+RFAGAEET+TIE +MQNGWALQSGTSHFLGQNFARAFDVY+QTK E RELVWATSWGV+TRL+GA++MTHSDD GLR LPPAVAP Q VVIVPITKG GED DLV VD A A+LKA G+RVKV
Sbjct: 341 KDMLALPVVKGTKSPMERFAGAEETFTIEGMMQNGWALQSGTSHFLGQNFARAFDVYFQTKNEDRELVWATSWGVSTRLMGALVMTHSDDAGLRQQLPPAVAPHQ--VVIVPITKGQGEDTDLVNSFVDTAVAQLKAQGIRVKV 482
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Match: A0A7S3XX04_HETAK (Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX04_HETAK) HSP 1 Score: 189 bits (480), Expect = 4.750e-54 Identity = 98/142 (69.01%), Postives = 113/142 (79.58%), Query Frame = 1
Query: 1 RDLILLPPWAIYGTVMDRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFARAFDVYYQTKEESRELVWATSWGVTTRLIGAMIMTHSDDLGLRLPPAVAPKQASVVIVPITKGSGEDADLVGEAVDAAAAELKAAGMRVKV 426
R ++ +P + +RFAGAEET+TIEALMQNGWALQSGTSHFLGQNFARAFDV++QT E RELVWATSWGV+TRL+GA++MTHSDD GL LPP VAP QA VIVPITKG GE+ LV VD A+LK AG+RVKV
Sbjct: 356 RRVLAVPVVKGVKSPSERFAGAEETFTIEALMQNGWALQSGTSHFLGQNFARAFDVFFQTAEGGRELVWATSWGVSTRLLGALVMTHSDDAGLVLPPPVAPVQA--VIVPITKGEGEETALVRRHVDRMVAQLKRAGVRVKV 495
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Match: A0A7S0W9N9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W9N9_9CRYP) HSP 1 Score: 171 bits (434), Expect = 3.130e-52 Identity = 88/142 (61.97%), Postives = 108/142 (76.06%), Query Frame = 1
Query: 1 RDLILLPPWAIYGTVMDRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFARAFDVYYQTKEESRELVWATSWGVTTRLIGAMIMTHSDDLGLRLPPAVAPKQASVVIVPITKGSGEDADLVGEAVDAAAAELKAAGMRVKV 426
RD + +P + +RFAGA++T+TIEALMQNGWALQSGTSHFLGQNFARAFDV +Q K++ ELVWATSWGV+TRL+GA++MTHSDD GL LPP VAP Q VVIVP+ +G E+ D V + A+LKA G+R KV
Sbjct: 5 RDYLAVPVVKGTKSPSERFAGADDTFTIEALMQNGWALQSGTSHFLGQNFARAFDVTFQNKDQKNELVWATSWGVSTRLLGALVMTHSDDQGLVLPPMVAPVQ--VVIVPVGRGKKENDDKVDAFLAPVEAQLKARGIRYKV 144
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Match: A0A7R9U9E9_9STRA (Proline--tRNA ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9E9_9STRA) HSP 1 Score: 181 bits (460), Expect = 1.200e-51 Identity = 98/144 (68.06%), Postives = 112/144 (77.78%), Query Frame = 1
Query: 1 RDLILLPPWAIYGTVM--DRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFARAFDVYYQTKEESRELVWATSWGVTTRLIGAMIMTHSDDLGLRLPPAVAPKQASVVIVPITKGSGEDADLVGEAVDAAAAELKAAGMRVKV 426
+DL+ +P I GT +RFAGA+ETYTIEALMQNGWALQSGTSHFLGQNFA+AFDV +Q KE RELVWATSWGV+TRLIGA++MTHSDD GL LPP VAP Q VV+VP+ K EDA V EAVD EL+A G+RV V
Sbjct: 272 QDLLAVP--VIKGTKSPSERFAGADETYTIEALMQNGWALQSGTSHFLGQNFAKAFDVLFQNKEGKRELVWATSWGVSTRLIGALVMTHSDDQGLVLPPKVAPIQ--VVVVPVGKPGTEDAQKVSEAVDKLVDELQAKGVRVHV 411
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Match: A0A7S0XC80_9STRA (Proline--tRNA ligase (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XC80_9STRA) HSP 1 Score: 178 bits (451), Expect = 3.560e-51 Identity = 92/142 (64.79%), Postives = 111/142 (78.17%), Query Frame = 1
Query: 1 RDLILLPPWAIYGTVMDRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFARAFDVYYQTKEESRELVWATSWGVTTRLIGAMIMTHSDDLGLRLPPAVAPKQASVVIVPITKGSGEDADLVGEAVDAAAAELKAAGMRVKV 426
+++ +P + +RFAGA++TYTIEALMQNGWALQSGTSHFLGQNFA+AFDVYYQT +RELVWATSWGV+TRLIGA++MTHSDD GL LPP VAP Q VVIVPITKGS E++ V + + LK+ G+RVKV
Sbjct: 163 EEILAMPVIKGRKSPSERFAGADDTYTIEALMQNGWALQSGTSHFLGQNFAKAFDVYYQTVSGTRELVWATSWGVSTRLIGALVMTHSDDKGLVLPPKVAPIQ--VVIVPITKGSNEESVKVIDKANEIMKHLKSRGIRVKV 302
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Match: A0A7S2SII9_9STRA (Proline--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SII9_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.250e-50 Identity = 92/142 (64.79%), Postives = 110/142 (77.46%), Query Frame = 1
Query: 1 RDLILLPPWAIYGTVMDRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFARAFDVYYQTKEESRELVWATSWGVTTRLIGAMIMTHSDDLGLRLPPAVAPKQASVVIVPITKGSGEDADLVGEAVDAAAAELKAAGMRVKV 426
D++ +P + +RFAGA+ET+TIEALMQNGWALQSGTSHFLGQNFARAFDV +Q+++ RELVWATSWGV+TRL+GAM+MTH+DD GL LPPAVAP Q VVIVPI + ED V A+D AELKA +RVKV
Sbjct: 284 EDMLAVPVVKGVKSASERFAGADETFTIEALMQNGWALQSGTSHFLGQNFARAFDVEFQSRDGKRELVWATSWGVSTRLVGAMVMTHADDAGLVLPPAVAPVQ--VVIVPILGKTPEDRQAVESAIDDVLAELKAENVRVKV 423
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Match: A0A8J2SB38_9STRA (Proline--tRNA ligase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SB38_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.340e-48 Identity = 88/132 (66.67%), Postives = 104/132 (78.79%), Query Frame = 1
Query: 40 TVMDRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFARAFDVYYQTKEESRELVWATSWGVTTRLIGAMIMTHSDDLGLRLPPAVAPKQASVVIVPITKGSGEDAD---LVGEAVDAAAAELKAAGMRVKV 426
+ ++RFAGA+ETYTIEALM NGWALQSGTSHFLGQNFARAFDVYYQ KE R+LVWATSWGV+TRL+GA++MTHSDD GL LPP +AP Q V +VPI KG+ +D + V VD E +A G+RVKV
Sbjct: 274 SAIERFAGADETYTIEALMPNGWALQSGTSHFLGQNFARAFDVYYQNKEAKRDLVWATSWGVSTRLLGALVMTHSDDAGLVLPPRIAPVQ--VALVPIVKGAEKDPEGTQTVMSLVDKVVDECEALGLRVKV 403
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Match: W7TTB8_9STRA (Proline--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTB8_9STRA) HSP 1 Score: 174 bits (442), Expect = 1.730e-48 Identity = 92/143 (64.34%), Postives = 111/143 (77.62%), Query Frame = 1
Query: 1 RDLILLPPWAIYGTVMDRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFARAFDVYYQTKEESRELVWATSWGVTTRLIGAMIMTHSDDLGLRLPPAVAPKQASVVIVPITKGSG-EDADLVGEAVDAAAAELKAAGMRVKV 426
RD++ LP + +RFAGAEET+TIEALMQNGWALQSGTSHFLGQNFARAFDV +QT E +RELVWATSWGV+TRLIGA++MTHSDD GL LPP+VAP Q VV+VPI KG+G E+ D ++ A+ L+ +RV V
Sbjct: 383 RDMLALPVVKGVKSASERFAGAEETFTIEALMQNGWALQSGTSHFLGQNFARAFDVDFQTAEGTRELVWATSWGVSTRLIGALVMTHSDDKGLVLPPSVAPVQ--VVVVPILKGAGSEEDDRTTAFMNTVASALRTQNVRVHV 523
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Match: A0A7S2HWK4_9EUKA (Proline--tRNA ligase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HWK4_9EUKA) HSP 1 Score: 169 bits (427), Expect = 1.230e-47 Identity = 91/147 (61.90%), Postives = 110/147 (74.83%), Query Frame = 1
Query: 1 RDLILLPPWAIYGTVMDRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFARAFDVYYQTKEESRELVWATSWGVTTRLIGAMIMTHSDDLGLRLPPAVAPKQASVVIVPITKGSGEDADLVGEA-----VDAAAAELKAAGMRVKV 426
RD++ +P + ++FAGA+ETYTIEALMQNGWALQS TSHFLGQNFARAFDVY+QT E ++ELVWATSWG +TRLIG ++MTHSDD GL LPPAVAP+Q VV VPI+ G + D G A V+ AAA L+ G+RV V
Sbjct: 167 RDVLAMPVIKGMKSPTEKFAGADETYTIEALMQNGWALQSATSHFLGQNFARAFDVYFQTAENTQELVWATSWGASTRLIGGLVMTHSDDQGLVLPPAVAPQQ--VVFVPISP-KGPEKDPEGHAKLMTFVNEAAASLRNTGVRVHV 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118857.1458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig118857.1458.1 >prot_H-elongata_contig118857.1458.1 ID=prot_H-elongata_contig118857.1458.1|Name=mRNA_H-elongata_contig118857.1458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp RDLILLPPWAIYGTVMDRFAGAEETYTIEALMQNGWALQSGTSHFLGQNFback to top mRNA from alignment at H-elongata_contig118857:238..1999- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig118857.1458.1 ID=mRNA_H-elongata_contig118857.1458.1|Name=mRNA_H-elongata_contig118857.1458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1762bp|location=Sequence derived from alignment at H-elongata_contig118857:238..1999- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig118857:238..1999- >mRNA_H-elongata_contig118857.1458.1 ID=mRNA_H-elongata_contig118857.1458.1|Name=mRNA_H-elongata_contig118857.1458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig118857:238..1999- (Himanthalia elongata Himel1 dioecious)back to top |