mRNA_H-elongata_contig118846.1457.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118846.1457.1
Unique NamemRNA_H-elongata_contig118846.1457.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Match: A0A6H5LCF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCF0_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 8.570e-40
Identity = 83/111 (74.77%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:    1 SLQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRLRSAPVSLLEGTSSSGVVVPGGEAAGGGQGLAPSQAQVDFAKELEQHFHASGPPVVESGDGG 333
            SLQYAT ATVSRCGMVWFSA+E    DS    NPGTVT DMLLRHK++RLRS PVSLLEG SSS V VPGGEAAGGGQGLAPS AQ+DFA+ LE HFHA+GP +V   DGG
Sbjct:  123 SLQYATLATVSRCGMVWFSASEQNGVDSDTSPNPGTVTNDMLLRHKLMRLRSDPVSLLEG-SSSAVGVPGGEAAGGGQGLAPSTAQLDFAQVLEPHFHAAGP-LVPGTDGG 231
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BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Match: D8LRI5_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI5_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.180e-39
Identity = 82/111 (73.87%), Postives = 91/111 (81.98%), Query Frame = 1 
Query:    1 SLQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRLRSAPVSLLEGTSSSGVVVPGGEAAGGGQGLAPSQAQVDFAKELEQHFHASGPPVVESGDGG 333
            SLQYAT ATVSRCGMVWFSA+E    DS    NPGTVT DMLLRHK++RLRS PVSLLEG+SS+ V VPGGEAAGGGQGLAPS AQ+DFA+ LE HFHA+GP +V   DGG
Sbjct: 2405 SLQYATLATVSRCGMVWFSASEQNGVDSDTAPNPGTVTNDMLLRHKLMRLRSDPVSLLEGSSST-VGVPGGEAAGGGQGLAPSTAQLDFAQVLEPHFHAAGP-LVPGTDGG 2513
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BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Match: A0A8J9V473_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9V473_9NEOP)

HSP 1 Score: 53.9 bits (128), Expect = 6.190e-6
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:    4 LQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRLRSAPVSLLEGTSSSGVVVPGGEAAGGGQGLAPS------QAQVDFAKELEQHFHASG 303
            L+YAT ATVSRCGMVWFS                 +TT+M+  + +LRLR+ P+   +G   S  +V    ++GG Q +A +      Q Q D A  L+  F+  G
Sbjct: 2340 LKYATLATVSRCGMVWFSQ--------------DVLTTEMIFENYLLRLRNIPLE--DGEEDSFSIVMAAPSSGGDQNVAETILSPALQTQRDVAAILQPLFYGDG 2429
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BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Match: A0A8J9YG57_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=2 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9YG57_9NEOP)

HSP 1 Score: 53.9 bits (128), Expect = 6.190e-6
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:    4 LQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRLRSAPVSLLEGTSSSGVVVPGGEAAGGGQGLAPS------QAQVDFAKELEQHFHASG 303
            L+YAT ATVSRCGMVWFS                 +TT+M+  + +LRLR+ P+   +G   S  +V    ++GG Q +A +      Q Q D A  L+  F+  G
Sbjct: 2356 LKYATLATVSRCGMVWFSQ--------------DVLTTEMIFENYLLRLRNIPLE--DGEEDSFSIVMAAPSSGGDQNVAETILSPALQTQRDVAAILQPLFYGDG 2445
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BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Match: UPI00200BFB41 (dynein heavy chain, cytoplasmic n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200BFB41)

HSP 1 Score: 53.9 bits (128), Expect = 6.220e-6
Identity = 41/106 (38.68%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:    4 LQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRLRSAPVSLLEGTSSSGVVVPGGEAAGGGQG-----LAPS-QAQVDFAKELEQHFHASG 303
            L+YAT ATVSRCGMVWFS                 +TT+M+  + +LRLR+ P+   +G   S  +V    AAGG Q      L+P+ Q Q D A  L+  F   G
Sbjct: 2333 LKYATLATVSRCGMVWFSQ--------------DVLTTEMIFENYLLRLRNIPLE--DGEEDSFSIVMAAPAAGGDQNATENILSPALQTQRDVAMILQPLFFGDG 2422
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BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Match: A0A2S2QL36_9HEMI (Dynein heavy chain, cytoplasmic n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2QL36_9HEMI)

HSP 1 Score: 53.9 bits (128), Expect = 6.220e-6
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:    4 LQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRLRSAPVSLLEGTSSSGVVVPGGEAAGGG---QGLAPS-QAQVDFAKELEQHFHASG 303
            L+YAT ATVSRCGM+WFS  ED             +TT+M+  + + RLRS P+   EG   S  ++P   +A  G   Q ++PS Q Q+D    L+ H  + G
Sbjct: 2349 LKYATLATVSRCGMIWFS--EDV------------LTTEMIFENYLSRLRSIPID--EGDEDSISLIPQPVSATSGTVDQFISPSLQLQLDIVTMLQPHLSSDG 2436
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BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Match: A0A8B8FXT6_9HEMI (dynein heavy chain, cytoplasmic isoform X1 n=4 Tax=Sipha flava TaxID=143950 RepID=A0A8B8FXT6_9HEMI)

HSP 1 Score: 53.9 bits (128), Expect = 6.220e-6
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:    4 LQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRLRSAPVSLLEGTSSSGVVVPGGEAAGGG---QGLAPS-QAQVDFAKELEQHFHASG 303
            L+YAT ATVSRCGM+WFS  ED             +TT+M+  + + RLRS P+   EG   S  ++P   +A  G   Q ++PS Q Q+D    L+ H  + G
Sbjct: 2368 LKYATLATVSRCGMIWFS--EDV------------LTTEMIFENYLSRLRSIPID--EGDEDSISLIPQPVSATSGTVDQFISPSLQLQLDIVTMLQPHLSSDG 2455
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BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Match: A0A8J6F6M2_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6F6M2_ELECQ)

HSP 1 Score: 53.5 bits (127), Expect = 8.280e-6
Identity = 40/100 (40.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:    4 LQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRLRSAPVSLLEGTSSSGVVVPGGEAAGGGQGLAPSQAQVDFAKELEQHFHASG 303
            L+YAT ATVSRCGMVWFS  ED             ++TDM+  H + RLRS P+   EG   +  +  G E  G        Q Q D A  L+ +F +SG
Sbjct:  604 LKYATLATVSRCGMVWFS--EDV------------LSTDMIFNHFLARLRSIPLD--EGEDEAQRMRKGKEDEGEESSSPMLQIQRDAATVLQPYFTSSG 687
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BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Match: UPI001C202153 (dynein heavy chain, cytoplasmic isoform X7 n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C202153)

HSP 1 Score: 53.5 bits (127), Expect = 8.490e-6
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:    4 LQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRLRSAPVSLLEGTSSSGVVVPGGEAAGGGQG-----LAPS-QAQVDFAKELEQHFHASG 303
            L+YAT ATVSRCGMVWFS                 +TT+M+  + +LRLR+ P+   +G   S  +V     AGG Q      L+P+ Q Q D A  L+  F+  G
Sbjct: 2332 LKYATLATVSRCGMVWFSQ--------------DVLTTEMIFENYLLRLRNIPLE--DGEEDSFSIVMAAPTAGGDQNAVENILSPALQTQRDVAAILQPLFYGDG 2421
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BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Match: UPI001C2097A6 (dynein heavy chain, cytoplasmic isoform X5 n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C2097A6)

HSP 1 Score: 53.5 bits (127), Expect = 8.490e-6
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:    4 LQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRLRSAPVSLLEGTSSSGVVVPGGEAAGGGQG-----LAPS-QAQVDFAKELEQHFHASG 303
            L+YAT ATVSRCGMVWFS                 +TT+M+  + +LRLR+ P+   +G   S  +V     AGG Q      L+P+ Q Q D A  L+  F+  G
Sbjct: 2340 LKYATLATVSRCGMVWFSQ--------------DVLTTEMIFENYLLRLRNIPLE--DGEEDSFSIVMAAPTAGGDQNAVENILSPALQTQRDVAAILQPLFYGDG 2429
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118846.1457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCF0_9PHAE8.570e-4074.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRI5_ECTSI1.180e-3973.87Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A8J9V473_9NEOP6.190e-635.85(lesser marbled fritillary) hypothetical protein (... [more]
A0A8J9YG57_9NEOP6.190e-635.85(lesser marbled fritillary) hypothetical protein (... [more]
UPI00200BFB416.220e-638.68dynein heavy chain, cytoplasmic n=1 Tax=Leguminivo... [more]
A0A2S2QL36_9HEMI6.220e-638.46Dynein heavy chain, cytoplasmic n=1 Tax=Sipha flav... [more]
A0A8B8FXT6_9HEMI6.220e-638.46dynein heavy chain, cytoplasmic isoform X1 n=4 Tax... [more]
A0A8J6F6M2_ELECQ8.280e-640.00Uncharacterized protein n=1 Tax=Eleutherodactylus ... [more]
UPI001C2021538.490e-637.74dynein heavy chain, cytoplasmic isoform X7 n=1 Tax... [more]
UPI001C2097A68.490e-637.74dynein heavy chain, cytoplasmic isoform X5 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118846contigH-elongata_contig118846:853..1827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue3.5e-34
Seed eggNOG ortholog2880.D8LRI5
KEGG koko:K10413
KEGG Pathwayko04145,ko04962,ko05132,map04145,map04962,map05132
GOsGO:0000003,GO:0000070,GO:0000166,GO:0000235,GO:0000278,GO:0000280,GO:0000741,GO:0000742,GO:0000746,GO:0000747,GO:0000819,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005818,GO:0005819,GO:0005856,GO:0005868,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005938,GO:0006810,GO:0006928,GO:0006996,GO:0006997,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007080,GO:0007097,GO:0007127,GO:0007129,GO:0008144,GO:0008150,GO:0008569,GO:0008608,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019953,GO:0022402,GO:0022414,GO:0030286,GO:0030473,GO:0030554,GO:0030705,GO:0030863,GO:0030981,GO:0030989,GO:0031134,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0035974,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044703,GO:0044764,GO:0045132,GO:0045143,GO:0045503,GO:0045505,GO:0046907,GO:0048284,GO:0048285,GO:0050000,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051321,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051959,GO:0061982,GO:0070192,GO:0071840,GO:0071944,GO:0072384,GO:0072687,GO:0097159,GO:0097367,GO:0098813,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1901265,GO:1901363,GO:1902494,GO:1903046,GO:1903047,GO:1990574,GO:1990758,GO:1990939
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Ec32 ortholog descriptionaxonemal 1-beta dynein heavy chain dynein heavy chain
Ec32 orthologEc-09_004820.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size354
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118846.1457.1prot_H-elongata_contig118846.1457.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118846 854..1827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.2436233-CDS-H-elongata_contig118846:853..9461622929695.2436233-CDS-H-elongata_contig118846:853..946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118846 854..946 -
1691679122.0308416-CDS-H-elongata_contig118846:853..9461691679122.0308416-CDS-H-elongata_contig118846:853..946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118846 854..946 -
1622929695.2558303-CDS-H-elongata_contig118846:1202..13221622929695.2558303-CDS-H-elongata_contig118846:1202..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118846 1203..1322 -
1691679122.0434628-CDS-H-elongata_contig118846:1202..13221691679122.0434628-CDS-H-elongata_contig118846:1202..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118846 1203..1322 -
1622929695.2676165-CDS-H-elongata_contig118846:1689..18271622929695.2676165-CDS-H-elongata_contig118846:1689..1827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118846 1690..1827 -
1691679122.0534904-CDS-H-elongata_contig118846:1689..18271691679122.0534904-CDS-H-elongata_contig118846:1689..1827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118846 1690..1827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118846.1457.1

>prot_H-elongata_contig118846.1457.1 ID=prot_H-elongata_contig118846.1457.1|Name=mRNA_H-elongata_contig118846.1457.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
SLQYATPATVSRCGMVWFSAAEDARPDSVRPGNPGTVTTDMLLRHKMLRL
RSAPVSLLEGTSSSGVVVPGGEAAGGGQGLAPSQAQVDFAKELEQHFHAS
GPPVVESGDGGINGGKY
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mRNA from alignment at H-elongata_contig118846:853..1827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118846.1457.1 ID=mRNA_H-elongata_contig118846.1457.1|Name=mRNA_H-elongata_contig118846.1457.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at H-elongata_contig118846:853..1827- (Himanthalia elongata Himel1 dioecious)
AGCCTGCAGTACGCCACGCCGGCTACTGTCTCCCGTTGTGGCATGGTGTG
GTTCTCGGCCGCTGAGGACGCGAGGCCTGACTCGGTCAGACCGGGCAACC
CCGGCACGGTGACAACCGACATGCTGCTTCGCCACAAGGTTGGTTGGGCG
TTGGGCGGCTCTCGGCTCTTTGTGCGACGAATGATGAGAGTGTACAAGGT
GCAGCGGGCTGCGTGTTTCGTAGGGGGTGTTGGCGTTTCCCCCCACTGGA
GGGGTTAACGCGACCCCGACCCCCCACAGTCGCACGTTGATTGTCTTCGT
GGAAACCCTAGACGTTACAGCCCCATCAAAACAGCTGGCATAACACAACA
GCCGCAGCATTAGAACTCAGCGTCAAAATAACGATGCGGCGCAATTCAGT
AGAAAATGATCACGGCCCATCTACGGACTACATATCGGCCATAAGGTTAG
GCGCCCAATGCGGAGATGCCTTCCCCCCCTCTTCCCTACTTTTAATTCCC
CACAGATGTTGCGGCTGAGATCCGCCCCCGTGTCGCTCTTGGAAGGAACG
TCGTCCAGTGGTGTTGTGGTCCCAGGTGGCGAGGCGGCTGGCGGAGGCCA
AGGGCTGGCACCGTCGCAGGCTCAGGTCCAGTAGCAGTACAGACTGTAGA
TCTTGCCTGAGAGTCTTTGGGGAGAAGATCTACCTAGAGGCGTAGCGCGA
TTGCAAGCCAGCTTTGTGCAATCATGGCCTCGTCCGTGTCGTGGGGTGTC
CTTCCCTACCGAGAGCAGCAACCGACACACCGTCTCGGCCACAGCAGCTC
TGCTGTGTCTCCTGGTATCGGTCGGGTTCGCCCCGTAACCCTGTTCGTTT
TGCGCGCCTTGTAACCCCGTCAACAACAAAGGTGGATTTCGCGAAGGAGC
TGGAGCAGCACTTTCACGCGTCAGGGCCGCCGGTCGTGGAGAGTGGAGAC
GGCGGCATCAATGGCGGAAAGTACC
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Coding sequence (CDS) from alignment at H-elongata_contig118846:853..1827-

>mRNA_H-elongata_contig118846.1457.1 ID=mRNA_H-elongata_contig118846.1457.1|Name=mRNA_H-elongata_contig118846.1457.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig118846:853..1827- (Himanthalia elongata Himel1 dioecious)
AGCCTGCAGTACGCCACGCCGGCTACTGTCTCCCGTTGTGGCATGGTGTG
GTTCTCGGCCGCTGAGGACGCGAGGCCTGACTCGGTCAGACCGGGCAACC
CCGGCACGGTGACAACCGACATGCTGCTTCGCCACAAGAGCCTGCAGTAC
GCCACGCCGGCTACTGTCTCCCGTTGTGGCATGGTGTGGTTCTCGGCCGC
TGAGGACGCGAGGCCTGACTCGGTCAGACCGGGCAACCCCGGCACGGTGA
CAACCGACATGCTGCTTCGCCACAAGATGTTGCGGCTGAGATCCGCCCCC
GTGTCGCTCTTGGAAGGAACGTCGTCCAGTGGTGTTGTGGTCCCAGGTGG
CGAGGCGGCTGGCGGAGGCCAAGGGCTGGCACCGTCGCAGGCTCAGATGT
TGCGGCTGAGATCCGCCCCCGTGTCGCTCTTGGAAGGAACGTCGTCCAGT
GGTGTTGTGGTCCCAGGTGGCGAGGCGGCTGGCGGAGGCCAAGGGCTGGC
ACCGTCGCAGGCTCAGGTGGATTTCGCGAAGGAGCTGGAGCAGCACTTTC
ACGCGTCAGGGCCGCCGGTCGTGGAGAGTGGAGACGGCGGCATCAATGGC
GGAAAGTACGTGGATTTCGCGAAGGAGCTGGAGCAGCACTTTCACGCGTC
AGGGCCGCCGGTCGTGGAGAGTGGAGACGGCGGCATCAATGGCGGAAAGT
AC
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