mRNA_H-elongata_contig118503.1428.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118503.1428.1
Unique NamemRNA_H-elongata_contig118503.1428.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Match: D7G0U6_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U6_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 3.230e-69
Identity = 95/116 (81.90%), Postives = 111/116 (95.69%), Query Frame = 1
Query:    1 EDDLGAGRASYGDDLETLDKRRSEELKLIGEYDSATINPRRECWFMVDTKWLQSWAKFVRGEGPPPGRISNEALVQDDFKTPIEGLVAKVDYRGVNPTVWFLYVEMYGKDSAHNLC 348
            ED+LGAGRASYGDDL+TLD+RR+EEL+LIGE+DSA INPRRECWF+VDTKWLQ+WAKFVRGEGPPPGRISN+ LV+DD KTP++GLV++VDYRGVNP VWFLY+EMYGKDSA +LC
Sbjct:   59 EDELGAGRASYGDDLDTLDRRRTEELRLIGEFDSANINPRRECWFIVDTKWLQTWAKFVRGEGPPPGRISNKGLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLC 174          
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Match: A0A6U1BH02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BH02_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.650e-34
Identity = 57/116 (49.14%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 EDDLGAGRASYGDDLETLDKRRSEELKLIGEYDSATINPRRECWFMVDTKWLQSWAKFVRGEGPPPGRISNEALVQDDFKTPIEGLVAKVDYRGVNPTVWFLYVEMYGKDSAHNLC 348
            EDDLGA      ++LE L++RRS EL L+ ++D   INPRRECWF++DT W++ W+ ++ G+   PGRISN  L + D +T    LV K DYRG++P +W+++VE+YGKD+A  LC
Sbjct:   27 EDDLGA---LTPEELELLEERRSAELALVSKFDKTEINPRRECWFLIDTTWIRDWSLYMEGKRDSPGRISNLNLFEADERTVKRKLVPKQDYRGLSPLMWYIFVELYGKDAAPELC 139          
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Match: K3WJJ2_GLOUD (DUSP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJJ2_GLOUD)

HSP 1 Score: 98.6 bits (244), Expect = 1.160e-21
Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   46 ETLDKRRSEELKLIGEYDSATINPRRECWFMVDTKWLQSWAKFVRGEGPPPGRISNEALVQDDFK------------TPIEGLVAKVDYRGVNPTVWFLYVEMYGKDSA 336
            E LDKRR  EL L+ +YD ATI  R+ECWF++D  W+ +W  F    GP PG I+NE L++ ++K            TP +GL A+ DYR V P V+ L+VE++G   A
Sbjct:  428 EDLDKRRKMELALVVKYDKATIG-RKECWFVIDANWMNNWVNFAARGGPLPGPITNEVLLEPNWKERLEGLAPGRADTPRKGLTAQKDYRCVTPMVFCLFVELHGMGEA 535          
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Match: A0A7S3M225_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M225_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.250e-21
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   61 RRSEELKLIGEYDSATINPRRECWFMVDTKWLQSWAKFVRG-EGPP-PGRISNEALVQDDFKTPIEGLVAKVDYRGVNPTVWFLYVEMYGKDSAHNLC 348
            R+ +ELKL+ ++D + IN  +ECWF+VD+ WL  W+ FV G +G   PG +S + L+ D    P+  L+   DYRGV P V+F+++E+YGKDS+  LC
Sbjct:   41 RKKQELKLVKKFDKSAINVAKECWFLVDSDWLNKWSAFVNGGDGEDSPGPLSTKELL-DAQDIPLLNLMPIRDYRGVPPIVYFIFLELYGKDSSPELC 137          
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Match: K3WJJ1_GLOUD (DUSP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJJ1_GLOUD)

HSP 1 Score: 93.2 bits (230), Expect = 8.230e-20
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   46 ETLDKRRSEELKLIGEYDSATINPRRECWFMVDTKWLQSWAKFVRGEGPPPGRISNEALVQDDFK------------TPIEGLVAKVDYRGVNPTVWFLYVEMYGKDSA 336
            E LD RR  EL L+ ++D   I+ R+ECWF+VDT+W+  W  FV   GP PG I+NEAL+Q D+              P EGL   V YR VNP VW +  E++G   A
Sbjct:  346 EDLDLRRKLELALVMKFDKRKIS-RKECWFLVDTQWMARWVAFVGQNGPLPGPITNEALLQPDWHERLRGELPGEPDAPREGLERMVHYRCVNPMVWCILSELHGPGDA 453          
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Match: A0A485L9L2_9STRA (Aste57867_18151 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9L2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.560e-19
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   55 DKRRSEELKLIGEYDSATINPRRECWFMVDTKWLQSWAKFVRGEGPPPGRISNEALVQDDFKT------------PIEGLVAKVDYRGVNPTVWFLYVEMYG 324
            ++RR EEL  + ++++ T+ PR  CW ++D  W++ W +F   +GPPPG ISNE+LVQDD+K             P +GL    DYR V P VW + VE++G
Sbjct:    6 ERRRREELFFVQKHEATTL-PRGHCWLLLDADWMERWWQFAAADGPPPGPISNESLVQDDWKLRILGDVPGDPDLPRDGLQLGRDYRCVTPLVWCVLVELHG 106          
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Match: A0A6G0XFM4_9STRA (DUSP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XFM4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.830e-18
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   55 DKRRSEELKLIGEYDSATINPRRECWFMVDTKWLQSWAKFVRGEGPPPGRISNEALVQD------------DFKTPIEGLVAKVDYRGVNPTVWFLYVEMYG 324
            ++RR EEL  + ++++ +I+ R +CWFM+D +W+  W K+   +GPPPG ISNE +VQ+            D   P E L   VDY  V P VW + VE++G
Sbjct:    6 ERRRKEELFFVQQHEATSIS-RGQCWFMLDAQWMDRWWKYATNDGPPPGPISNEGIVQEGWELRLHGDAPGDADLPRENLQLSVDYHCVTPLVWCVLVELHG 106          
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Match: A0A6H5L668_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L668_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.040e-18
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  196 PGRISNEA-LVQDDFKTPIEGLVAKVDYRGVNPTVWFLYVEMYGKDSAHNLC 348
            P  I  EA LV+DD KTP++GLV++VDYRGVNP VWFLY+EMYGKDSA +LC
Sbjct:   21 PSTIELEADLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLC 72          
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Match: A0A485L0V2_9STRA (Aste57867_13847 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0V2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.650e-17
Identity = 44/102 (43.14%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   55 DKRRSEELKLIGEYDSATINPRRECWFMVDTKWLQSWAKFVRGEGPPPGRISNEALVQD------------DFKTPIEGLVAKVDYRGVNPTVWFLYVEMYG 324
            D RR EE  L+   D+  I  R ECW +VD KW++ W  F    GPPPG I+NE LVQD            D   P EGL   VDYR V P VW  +  ++G
Sbjct:  244 DLRRKEEFTLMKLNDATKIE-RGECWMVVDAKWVERWVTFAALNGPPPGPINNEVLVQDGWLERMEGKLPGDADLPREGLKVSVDYRCVTPLVWCFFTALHG 344          
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Match: A0A067CS21_SAPPC (DUSP domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CS21_SAPPC)

HSP 1 Score: 84.0 bits (206), Expect = 9.450e-17
Identity = 39/103 (37.86%), Postives = 55/103 (53.40%), Query Frame = 1
Query:   52 LDKRRSEELKLIGEYDSATINPRRECWFMVDTKWLQSWAKFVRGEGPPPGRISNEALVQDDFKTPIEGLVAK------------VDYRGVNPTVWFLYVEMYG 324
             D RR EE   + ++D   I  R ECW ++D KW++ W  +    GPPPG I+NEALV D ++  + G +A             VDYR V P VW  +V ++G
Sbjct:  204 FDLRRKEEFTFLKKHDKTKI-ARGECWLVIDAKWIERWVLYAAMSGPPPGPITNEALVMDGWQERLTGAIAGDADLPRPNLKVGVDYRCVTPLVWCFFVALHG 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118503.1428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G0U6_ECTSI3.230e-6981.90DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6U1BH02_9STRA1.650e-3449.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3WJJ2_GLOUD1.160e-2144.04DUSP domain-containing protein n=1 Tax=Globisporan... [more]
A0A7S3M225_9STRA7.250e-2144.90Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
K3WJJ1_GLOUD8.230e-2044.04DUSP domain-containing protein n=1 Tax=Globisporan... [more]
A0A485L9L2_9STRA3.560e-1941.18Aste57867_18151 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XFM4_9STRA5.830e-1839.22DUSP domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A6H5L668_9PHAE6.040e-1871.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485L0V2_9STRA1.650e-1743.14Aste57867_13847 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CS21_SAPPC9.450e-1737.86DUSP domain-containing protein n=1 Tax=Saprolegnia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118503contigH-elongata_contig118503:115..1283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size351
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118503.1428.1prot_H-elongata_contig118503.1428.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118503 115..1279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.3305435-CDS-H-elongata_contig118503:114..2461622929692.3305435-CDS-H-elongata_contig118503:114..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118503 115..246 -
1691679120.9450245-CDS-H-elongata_contig118503:114..2461691679120.9450245-CDS-H-elongata_contig118503:114..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118503 115..246 -
1622929692.6180565-CDS-H-elongata_contig118503:716..8321622929692.6180565-CDS-H-elongata_contig118503:716..832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118503 717..832 -
1691679120.9570858-CDS-H-elongata_contig118503:716..8321691679120.9570858-CDS-H-elongata_contig118503:716..832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118503 717..832 -
1622929692.633148-CDS-H-elongata_contig118503:1182..12791622929692.633148-CDS-H-elongata_contig118503:1182..1279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118503 1183..1279 -
1691679120.9724793-CDS-H-elongata_contig118503:1182..12791691679120.9724793-CDS-H-elongata_contig118503:1182..1279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118503 1183..1279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.6440456-UTR-H-elongata_contig118503:1279..12831622929692.6440456-UTR-H-elongata_contig118503:1279..1283Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118503 1280..1283 -
1691679120.982384-UTR-H-elongata_contig118503:1279..12831691679120.982384-UTR-H-elongata_contig118503:1279..1283Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118503 1280..1283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118503.1428.1

>prot_H-elongata_contig118503.1428.1 ID=prot_H-elongata_contig118503.1428.1|Name=mRNA_H-elongata_contig118503.1428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MILEPGGHLMGMISRLSTSVDPRSSSSSGSTTRQRSIRAGSAGSWSTLSG
CRAGPSLSEEKVPRLVASAMKPWSKMTSRHPSRAWSLKWTTAASILLCGS
FMWRCTAKTVPIISA
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mRNA from alignment at H-elongata_contig118503:115..1283-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118503.1428.1 ID=mRNA_H-elongata_contig118503.1428.1|Name=mRNA_H-elongata_contig118503.1428.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1169bp|location=Sequence derived from alignment at H-elongata_contig118503:115..1283- (Himanthalia elongata Himel1 dioecious)
GAGGATGATCTTGGAGCCGGGAGGGCATCTTATGGGGATGATCTCGAGAC TCTCGACAAGCGTCGATCCGAGGAGCTCAAGCTCATCGGGGAGTACGACT CGTAAGTCACGTGGAACAAAACATACCTTTGTTGCGGCAGTACCAGGTGT AGTATTCGATCGGGTCCCATACGCGATTGCTATTCTTTAATAAGTAGTAT AGTAGGTCTAATTAGTTGGCATTACTTGTAGGGTGTTCACGGTTCAAGAG ATTCCATCTTCGTGACGCGTCTCCGAACGACTCGTGCTCTTCAATAGTGC GAGCAGATGAAACACTTTCGCACTGTATTGCTAGGTGCGTCAATGAACCT ATCTCGCACATCGGTCGCGGGGGATTCCATTCGTGGCGGTTGCGTACGAA CCATTATAGTATAGACAGGCGAGTGAAGACTTTCCTGCGGTGCTGACACA GGGCAACGATCAATCCGCGCCGGGAGTGCTGGTTCATGGTCGACACTAAG TGGCTGCAGAGCTGGGCCAAGTTTGTCAGAGGAGAAGGTCCCCCGCCTGG TCGCATCAGCAATGAAGGTGATGACTAACTCACTTCGTATTTATTTGGAT GTCAAAACCCCAAACGCCACAATTGAACTGGAGGATCCTCGACATCGTCG ATGTTCCAAATACTCCGCTGCAGTGTGGTTCGCAGTGTGGTTCCCGAATG CCTCTTTATCTTTCACGCGCTTGTTCCGTAGATACCACCATTTTGATCGA ATCATCATCTTTTGTTTATATTGCTAGCGAGGCACACACGCCAGTTCTCT CGGAAAGCAGACATTCCGCCTGGGGGCCCTTGGATCGATCTGCGAGATAT AAAATGTTCAGCGGGATTTGAACCCCAGTACTACCGTCGACGCCAAATGT GATAAGGTAACCATTACACCACAGCGTAAAAGTCTTTTGACAATATTACA ACTCGGTAATTAGTCTTTATAAAAGTTACCCATTGTATCGAAAACAAATG TGCGGATCAATGTTGCCCGATCTGCCGATTTGGTCAGCCTTGGTCCAAGA TGACTTCAAGACACCCATCGAGGGCCTGGTCGCTAAAGTGGACTACCGCG GCGTCAATCCTACTGTGTGGTTCCTTTATGTGGAGATGTACGGCAAAGAC AGTGCCCATAATCTCTGCA
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Coding sequence (CDS) from alignment at H-elongata_contig118503:115..1283-

>mRNA_H-elongata_contig118503.1428.1 ID=mRNA_H-elongata_contig118503.1428.1|Name=mRNA_H-elongata_contig118503.1428.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig118503:115..1283- (Himanthalia elongata Himel1 dioecious)
ATGATCTTGGAGCCGGGAGGGCATCTTATGGGGATGATCTCGAGACTCTC
GACAAGCGTCGATCCGAGGAGCTCAAGCTCATCGGGGAGTACGACTCATG
ATCTTGGAGCCGGGAGGGCATCTTATGGGGATGATCTCGAGACTCTCGAC
AAGCGTCGATCCGAGGAGCTCAAGCTCATCGGGGAGTACGACTCGGCAAC
GATCAATCCGCGCCGGGAGTGCTGGTTCATGGTCGACACTAAGTGGCTGC
AGAGCTGGGCCAAGTTTGTCAGAGGAGAAGGTCCCCCGCCTGGTCGCATC
AGCAATGAAGGGCAACGATCAATCCGCGCCGGGAGTGCTGGTTCATGGTC
GACACTAAGTGGCTGCAGAGCTGGGCCAAGTTTGTCAGAGGAGAAGGTCC
CCCGCCTGGTCGCATCAGCAATGAAGCCTTGGTCCAAGATGACTTCAAGA
CACCCATCGAGGGCCTGGTCGCTAAAGTGGACTACCGCGGCGTCAATCCT
ACTGTGTGGTTCCTTTATGTGGAGATGTACGGCAAAGACAGTGCCCATAA
TCTCTGCACCTTGGTCCAAGATGACTTCAAGACACCCATCGAGGGCCTGG
TCGCTAAAGTGGACTACCGCGGCGTCAATCCTACTGTGTGGTTCCTTTAT
GTGGAGATGTACGGCAAAGACAGTGCCCATAATCTCTGCA
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