mRNA_H-elongata_contig118396.1419.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118396.1419.1
Unique NamemRNA_H-elongata_contig118396.1419.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Match: A0A6H5K4Q8_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Q8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.400e-25
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQVRHGVAHM 171
            V+L+YFQLGREDHRWWWRSF SGGSTGLF+Y YSFFYFFNRS MDGLLQ      +M
Sbjct:  101 VSLIYFQLGREDHRWWWRSFFSGGSTGLFVYGYSFFYFFNRSQMDGLLQSSFYFGYM 157
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BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Match: D8LTU6_ECTSI (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU6_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.700e-24
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQVRHGVAHM 171
            V+L+YFQLGREDHRWWWRSF SGGSTGLF+YAYSFFYFFNRS MDGLLQ      +M
Sbjct:  580 VSLIYFQLGREDHRWWWRSFFSGGSTGLFVYAYSFFYFFNRSQMDGLLQSSFYFGYM 636
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BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Match: F0YRK7_AURAN (Transmembrane 9 superfamily member n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRK7_AURAN)

HSP 1 Score: 92.4 bits (228), Expect = 8.190e-21
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQ 147
            V+LVYFQL RED+RWWWRS L GGSTG F+YAYSFFYFFNRS MDG++Q
Sbjct:  293 VSLVYFQLAREDYRWWWRSLLCGGSTGAFIYAYSFFYFFNRSSMDGMIQ 341
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BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Match: F0YMM4_AURAN (Transmembrane 9 superfamily member n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMM4_AURAN)

HSP 1 Score: 93.2 bits (230), Expect = 8.810e-21
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQ 147
            V+LVYFQL RED+RWWWRS L GGSTG+F+YAYSFFYFFNRS MDG++Q
Sbjct:  502 VSLVYFQLAREDYRWWWRSLLCGGSTGVFIYAYSFFYFFNRSSMDGMIQ 550
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BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Match: A0A482SWT9_9ARCH (Transmembrane 9 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWT9_9ARCH)

HSP 1 Score: 88.6 bits (218), Expect = 1.400e-20
Identity = 35/57 (61.40%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQVRHGVAHM 171
            +AL+YFQL REDHRWWW + ++GG+TGLF++ YSF+YFF+RS+MDGLLQ+     +M
Sbjct:  105 IALLYFQLAREDHRWWWSALINGGATGLFVFGYSFYYFFHRSNMDGLLQLSFYFGYM 161
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BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Match: W7TPI4_9STRA (Transmembrane 9 superfamily member n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPI4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.880e-20
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQVRHGVAHM 171
            +AL+YFQL REDHRWWWR+FL+GG+TGLF+ AYSFFY+F RS+MDG  Q  +   +M
Sbjct:  383 IALIYFQLTREDHRWWWRTFLNGGATGLFILAYSFFYYFQRSEMDGFFQASYFFGYM 439
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BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Match: A0A4D9D4A1_9STRA (Transmembrane 9 superfamily member n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4A1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.260e-20
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQVRHGVAHM 171
            +AL+YFQL REDHRWWWR+FL+GG+TGLF+ AYSFFY+F RS+MDG  Q  +   +M
Sbjct:  511 IALIYFQLTREDHRWWWRTFLNGGATGLFILAYSFFYYFQRSEMDGFFQASYFFGYM 567
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BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Match: A0A7S3K140_9STRA (Transmembrane 9 superfamily member n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K140_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.850e-20
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQ 147
            V+LVYFQL RED+RWWWRS L GG+TG F+YAYSFFYFF+RS+MDGL+Q
Sbjct:  504 VSLVYFQLAREDYRWWWRSLLCGGATGAFIYAYSFFYFFHRSNMDGLIQ 552
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BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Match: A0A812UHL6_SYMMI (Transmembrane 9 superfamily member n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UHL6_SYMMI)

HSP 1 Score: 89.7 bits (221), Expect = 8.560e-20
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQ 147
            +AL+YFQL REDHRWWWRSF +GG+TGL ++AYSFFYFF+RS MDG+LQ
Sbjct:  301 IALLYFQLVREDHRWWWRSFANGGATGLLIFAYSFFYFFHRSSMDGVLQ 349
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BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Match: A0A5B6ZW78_DAVIN (Transmembrane 9 superfamily member n=2 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZW78_DAVIN)

HSP 1 Score: 88.2 bits (217), Expect = 5.110e-19
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQVRHGVAHM 171
            VAL YFQL  EDH WWWRSFL GGSTGLF+YAYSF+Y++ RS M GLLQ      +M
Sbjct:  502 VALTYFQLAAEDHEWWWRSFLCGGSTGLFVYAYSFYYYYTRSHMSGLLQTSFFFGYM 558
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118396.1419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4Q8_9PHAE1.400e-2577.19Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
D8LTU6_ECTSI3.700e-2478.95Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
F0YRK7_AURAN8.190e-2179.59Transmembrane 9 superfamily member n=1 Tax=Aureoco... [more]
F0YMM4_AURAN8.810e-2179.59Transmembrane 9 superfamily member n=1 Tax=Aureoco... [more]
A0A482SWT9_9ARCH1.400e-2061.40Transmembrane 9 family protein n=1 Tax=archaeon Ta... [more]
W7TPI4_9STRA1.880e-2064.91Transmembrane 9 superfamily member n=1 Tax=Nannoch... [more]
A0A4D9D4A1_9STRA2.260e-2064.91Transmembrane 9 superfamily member n=1 Tax=Nannoch... [more]
A0A7S3K140_9STRA7.850e-2077.55Transmembrane 9 superfamily member n=1 Tax=Aureoum... [more]
A0A812UHL6_SYMMI8.560e-2075.51Transmembrane 9 superfamily member n=1 Tax=Symbiod... [more]
A0A5B6ZW78_DAVIN5.110e-1966.67Transmembrane 9 superfamily member n=2 Tax=Davidia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118396contigH-elongata_contig118396:1412..1582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue4.1e-20
Seed eggNOG ortholog2880.D8LTU6
Preferred nameTM9SF1
KEGG koko:K17085,ko:K17087
GOsGO:0002790,GO:0003674,GO:0003824,GO:0004888,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005886,GO:0005887,GO:0005911,GO:0006518,GO:0006807,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0007154,GO:0007155,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009237,GO:0009306,GO:0009505,GO:0009506,GO:0009605,GO:0009607,GO:0009624,GO:0009987,GO:0009991,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0016491,GO:0016614,GO:0016616,GO:0019184,GO:0019290,GO:0019748,GO:0022610,GO:0023052,GO:0030054,GO:0030312,GO:0030587,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031589,GO:0031667,GO:0031982,GO:0031984,GO:0032502,GO:0032940,GO:0033036,GO:0033299,GO:0033707,GO:0034613,GO:0034641,GO:0038023,GO:0042594,GO:0042886,GO:0043043,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044550,GO:0045184,GO:0046903,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0055114,GO:0060089,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072657,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0099120,GO:1901564,GO:1901566,GO:1901576,GO:1990641
EggNOG free text desc.secretion of lysosomal enzymes
EggNOG OGsKOG1277@2759,KOG1278@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categorysignal anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929691.2296786-CDS-H-elongata_contig118396:1411..15821622929691.2296786-CDS-H-elongata_contig118396:1411..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118396 1412..1582 +
1691679120.515331-CDS-H-elongata_contig118396:1411..15821691679120.515331-CDS-H-elongata_contig118396:1411..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118396 1412..1582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118396.1419.1prot_H-elongata_contig118396.1419.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118396 1412..1582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118396.1419.1

>prot_H-elongata_contig118396.1419.1 ID=prot_H-elongata_contig118396.1419.1|Name=mRNA_H-elongata_contig118396.1419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
VALVYFQLGREDHRWWWRSFLSGGSTGLFLYAYSFFYFFNRSDMDGLLQV
RHGVAHM
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mRNA from alignment at H-elongata_contig118396:1412..1582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118396.1419.1 ID=mRNA_H-elongata_contig118396.1419.1|Name=mRNA_H-elongata_contig118396.1419.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig118396:1412..1582+ (Himanthalia elongata Himel1 dioecious)
GTTGCGCTGGTGTACTTCCAGCTTGGACGCGAGGACCATCGTTGGTGGTG
GCGCAGTTTTTTGTCTGGAGGGTCAACGGGCTTGTTTCTATACGCCTATT
CGTTCTTCTACTTCTTCAATCGCTCGGACATGGACGGTCTCCTACAGGTG
CGGCATGGCGTGGCGCACATG
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Coding sequence (CDS) from alignment at H-elongata_contig118396:1412..1582+

>mRNA_H-elongata_contig118396.1419.1 ID=mRNA_H-elongata_contig118396.1419.1|Name=mRNA_H-elongata_contig118396.1419.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig118396:1412..1582+ (Himanthalia elongata Himel1 dioecious)
GTTGCGCTGGTGTACTTCCAGCTTGGACGCGAGGACCATCGTTGGTGGTG
GCGCAGTTTTTTGTCTGGAGGGTCAACGGGCTTGTTTCTATACGCCTATT
CGTTCTTCTACTTCTTCAATCGCTCGGACATGGACGGTCTCCTACAGGTG
CGGCATGGCGTGGCGCACATGGTTGCGCTGGTGTACTTCCAGCTTGGACG
CGAGGACCATCGTTGGTGGTGGCGCAGTTTTTTGTCTGGAGGGTCAACGG
GCTTGTTTCTATACGCCTATTCGTTCTTCTACTTCTTCAATCGCTCGGAC
ATGGACGGTCTCCTACAGGTGCGGCATGGCGTGGCGCACATG
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