mRNA_H-elongata_contig11834.1415.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11834.1415.1
Unique NamemRNA_H-elongata_contig11834.1415.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11834.1415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11834contigH-elongata_contig11834:6753..7416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size653
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.897356-CDS-H-elongata_contig11834:6752..72581622929690.897356-CDS-H-elongata_contig11834:6752..7258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11834 6753..7258 +
1691679120.3720622-CDS-H-elongata_contig11834:6752..72581691679120.3720622-CDS-H-elongata_contig11834:6752..7258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11834 6753..7258 +
1622929690.9154909-CDS-H-elongata_contig11834:7270..74151622929690.9154909-CDS-H-elongata_contig11834:7270..7415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11834 7271..7415 +
1691679120.3818874-CDS-H-elongata_contig11834:7270..74151691679120.3818874-CDS-H-elongata_contig11834:7270..7415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11834 7271..7415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11834.1415.1prot_H-elongata_contig11834.1415.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11834 6753..7415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11834.1415.1

>prot_H-elongata_contig11834.1415.1 ID=prot_H-elongata_contig11834.1415.1|Name=mRNA_H-elongata_contig11834.1415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
AEDNIDEDTEDEVDTQKDIVEVEDIEGPRDDVRDKVISPEGAVSDREHER
ELEGTIFGRIGSVETSDDNELVEDGGVYELPTQAMSMELDDTLEESDEIK
QEIDGSGEMPVQNRDEASAASATEYGAATVVTTEVDTASGGNRSGCVDEG
DDTADEGETARLFEEDNEIAGAPEAVRGLYQEVARGATSTTYDATPLTPL
RPTTRDPAPNHQTVSPG
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mRNA from alignment at H-elongata_contig11834:6753..7416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11834.1415.1 ID=mRNA_H-elongata_contig11834.1415.1|Name=mRNA_H-elongata_contig11834.1415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=664bp|location=Sequence derived from alignment at H-elongata_contig11834:6753..7416+ (Himanthalia elongata Himel1 dioecious)
GCTGAGGATAATATTGACGAGGATACTGAGGATGAGGTTGATACTCAGAA
AGATATCGTCGAGGTTGAGGATATCGAAGGGCCGAGAGATGATGTAAGAG
ATAAAGTGATATCGCCTGAAGGCGCTGTTAGTGACAGGGAACATGAACGC
GAATTGGAAGGTACAATCTTTGGACGTATCGGATCGGTGGAAACCTCGGA
CGATAATGAACTCGTAGAAGATGGAGGAGTCTACGAGCTCCCGACCCAGG
CAATGTCGATGGAGCTTGATGATACACTGGAAGAGAGTGACGAAATCAAG
CAGGAAATAGATGGATCCGGGGAAATGCCGGTTCAAAATCGAGATGAGGC
CTCCGCTGCCTCTGCTACCGAGTATGGTGCTGCTACCGTAGTCACCACCG
AGGTTGATACCGCGAGCGGGGGAAACCGTTCGGGGTGCGTGGACGAAGGC
GATGATACAGCGGACGAAGGTGAAACAGCCCGCCTCTTTGAAGAGGATAA
TGAAATGTCACATGCAAGCGCTGGCGCACCTGAGGCGGTCCGTGGTCTGT
ATCAGGAGGTTGCACGCGGCGCGACATCAACCACCTATGATGCGACGCCG
TTGACACCCCTCCGCCCAACGACACGGGACCCCGCGCCAAATCATCAGAC
AGTTTCACCGGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig11834:6753..7416+

>mRNA_H-elongata_contig11834.1415.1 ID=mRNA_H-elongata_contig11834.1415.1|Name=mRNA_H-elongata_contig11834.1415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig11834:6753..7416+ (Himanthalia elongata Himel1 dioecious)
GCTGAGGATAATATTGACGAGGATACTGAGGATGAGGTTGATACTCAGAA
AGATATCGTCGAGGTTGAGGATATCGAAGGGCCGAGAGATGATGTAAGAG
ATAAAGTGATATCGCCTGAAGGCGCTGTTAGTGACAGGGAACATGAACGC
GAATTGGAAGGTACAATCTTTGGACGTATCGGATCGGTGGAAACCTCGGA
CGATAATGAACTCGTAGAAGATGGAGGAGTCTACGAGCTCCCGACCCAGG
CAATGTCGATGGAGCTTGATGATACACTGGAAGAGAGTGACGAAATCAAG
CAGGAAATAGATGGATCCGGGGAAATGCCGGTTCAAAATCGAGATGAGGC
CTCCGCTGCCTCTGCTACCGAGTATGGTGCTGCTACCGTAGTCACCACCG
AGGTTGATACCGCGAGCGGGGGAAACCGTTCGGGGTGCGTGGACGAAGGC
GATGATACAGCGGACGAAGGTGAAACAGCCCGCCTCTTTGAAGAGGATAA
TGAAATGCTGAGGATAATATTGACGAGGATACTGAGGATGAGGTTGATAC
TCAGAAAGATATCGTCGAGGTTGAGGATATCGAAGGGCCGAGAGATGATG
TAAGAGATAAAGTGATATCGCCTGAAGGCGCTGTTAGTGACAGGGAACAT
GAACGCGAATTGGAAGGTACAATCTTTGGACGTATCGGATCGGTGGAAAC
CTCGGACGATAATGAACTCGTAGAAGATGGAGGAGTCTACGAGCTCCCGA
CCCAGGCAATGTCGATGGAGCTTGATGATACACTGGAAGAGAGTGACGAA
ATCAAGCAGGAAATAGATGGATCCGGGGAAATGCCGGTTCAAAATCGAGA
TGAGGCCTCCGCTGCCTCTGCTACCGAGTATGGTGCTGCTACCGTAGTCA
CCACCGAGGTTGATACCGCGAGCGGGGGAAACCGTTCGGGGTGCGTGGAC
GAAGGCGATGATACAGCGGACGAAGGTGAAACAGCCCGCCTCTTTGAAGA
GGATAATGAAATCGCTGGCGCACCTGAGGCGGTCCGTGGTCTGTATCAGG
AGGTTGCACGCGGCGCGACATCAACCACCTATGATGCGACGCCGTTGACA
CCCCTCCGCCCAACGACACGGGACCCCGCGCCAAATCATCAGACAGTTTC
ACCGGGGCGCTGGCGCACCTGAGGCGGTCCGTGGTCTGTATCAGGAGGTT
GCACGCGGCGCGACATCAACCACCTATGATGCGACGCCGTTGACACCCCT
CCGCCCAACGACACGGGACCCCGCGCCAAATCATCAGACAGTTTCACCGG
GG
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