mRNA_H-elongata_contig118307.1414.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118307.1414.1
Unique NamemRNA_H-elongata_contig118307.1414.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118307.1414.1 vs. uniprot
Match: D7G1H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H8_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.180e-26
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    4 QVCTKSGAAFGLTQSRYNCSSCGEAFALEYCSQKVPLPHHGFEEAVRVCDDCLAAQQLLAHLRYI----DSH 207
            +VC KSG AFG+TQSR+ CSSCG  F +E+C+Q+VPLPHHGFE+AVRVCDDCL AQQ L HLRYI    D+H
Sbjct:  140 EVCMKSGVAFGMTQSRHYCSSCGRVFVVEHCNQRVPLPHHGFEQAVRVCDDCLEAQQHLTHLRYICCTLDAH 211
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BLAST of mRNA_H-elongata_contig118307.1414.1 vs. uniprot
Match: A0A6H5KWD1_9PHAE (PI3K/PI4K catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.460e-13
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    7 VCTKSGAAFGLTQSRYNCSSCGEAFALEYCSQKVPLPHHGFEE 135
            VC KSG AFG+TQSR+ CSSCG  F LE+C+Q+VPLP HGFE+
Sbjct:  185 VCMKSGVAFGMTQSRHYCSSCGRVFVLEHCNQRVPLPQHGFEQ 227
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BLAST of mRNA_H-elongata_contig118307.1414.1 vs. uniprot
Match: A0A835YUK5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUK5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.100e-10
Identity = 37/83 (44.58%), Postives = 42/83 (50.60%), Query Frame = 1 
Query:   10 CTKSGA-----AFGLTQSRYNCSSCGEAFALEYCSQKVPLPHHGFEEAVRVCDDCL-------------AAQQLLAHLRYIDS 204
            C KSG      AFGLTQSRYNC SCG AF  E+C  + PL HHG E   R                    AQQLL HL+Y++ 
Sbjct:  304 CAKSGVGLDNLAFGLTQSRYNCVSCGRAFTFEHCHLECPLVHHGLEGRARXXXXXXXXXXXXXXXXXXXGAQQLLQHLQYLNG 386
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BLAST of mRNA_H-elongata_contig118307.1414.1 vs. uniprot
Match: UPI001884B189 (lateral signaling target protein 2 homolog n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884B189)

HSP 1 Score: 52.4 bits (124), Expect = 4.460e-6
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   10 CTKSGAAFGLTQSRYNCSSCGEAFALEYCSQKVPLPHHGFEEAVRVCDDCLAAQ 171
            C + G AF + + R++C  CG  F        +PLP +G   AVRVCD+CLAA+
Sbjct:  700 CMQCGQAFTVMRRRHHCRRCGRVFCSRCSGGVLPLPQYGHVSAVRVCDECLAAE 753
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BLAST of mRNA_H-elongata_contig118307.1414.1 vs. uniprot
Match: A0A0L0D7N0_THETB (FYVE-type domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D7N0_THETB)

HSP 1 Score: 51.6 bits (122), Expect = 8.320e-6
Identity = 21/58 (36.21%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:   10 CTKSGAAFGLTQSRYNCSSCGEAFALEYCSQKVPLPHHGFEEAVRVCDDCLAAQQLLA 183
            C K G  F L + +++C  CG  F     ++++PLPH G+ E VR+C DC+    L++
Sbjct:   41 CFKCGLLFSLFRWKHHCRQCGAVFCNSCSNKRIPLPHLGYHEPVRICLDCIQLAYLVS 98
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BLAST of mRNA_H-elongata_contig118307.1414.1 vs. uniprot
Match: UPI0003F0D40B (vacuolar protein 8-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D40B)

HSP 1 Score: 50.4 bits (119), Expect = 2.090e-5
Identity = 20/54 (37.04%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   31 FGLTQSRYNCSSCGEAFALEYCSQKVPLPHHGFEEAVRVCDDCLAAQQLLAHLR 192
            F   + +++C  CG     + C +KVPLPH G+ +  RVC++CL   QL++  R
Sbjct:   55 FNQFRRKHHCRVCGRVTCNKCCKEKVPLPHLGYPDPERVCEECLTVTQLISKSR 108
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BLAST of mRNA_H-elongata_contig118307.1414.1 vs. uniprot
Match: A0A4D9CSH4_9STRA (FYVE-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH4_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.610e-5
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:   28 AFGLTQSRYNCSSCGEAFALEYCSQKVPLPHHGFEEAVRVCDDC 159
            AFGL   R++C +CG +    +  ++VPLPH G+   VRVCD C
Sbjct:  107 AFGLLTRRHHCRNCGRSVCSRHAEKRVPLPHWGYLNYVRVCDRC 150
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BLAST of mRNA_H-elongata_contig118307.1414.1 vs. uniprot
Match: W7TLS0_9STRA (Zinc finger FYVE-type protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLS0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.820e-5
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:   28 AFGLTQSRYNCSSCGEAFALEYCSQKVPLPHHGFEEAVRVCDDC 159
            AFGL   R++C +CG +    +  ++VPLPH G+   VRVCD C
Sbjct:  107 AFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRC 150
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BLAST of mRNA_H-elongata_contig118307.1414.1 vs. uniprot
Match: A0A7S1KDW5_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1KDW5_9ALVE)

HSP 1 Score: 48.9 bits (115), Expect = 7.250e-5
Identity = 20/53 (37.74%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    1 VQVCTKSGAAFGLTQSRYNCSSCGEAFALEYCSQKVPLPHHGFEEAVRVCDDC 159
            V  C +  A F L + +++C +CG+ F  +  S ++ LP  G+ + VRVCDDC
Sbjct:   85 VTACMQCNATFNLGKWKHHCRACGKVFCADCSSTRLRLPDMGYNDKVRVCDDC 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118307.1414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G1H8_ECTSI1.180e-2669.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWD1_9PHAE7.460e-1369.77PI3K/PI4K catalytic domain-containing protein n=1 ... [more]
A0A835YUK5_9STRA1.100e-1044.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001884B1894.460e-642.59lateral signaling target protein 2 homolog n=1 Tax... [more]
A0A0L0D7N0_THETB8.320e-636.21FYVE-type domain-containing protein n=1 Tax=Thecam... [more]
UPI0003F0D40B2.090e-537.04vacuolar protein 8-like n=1 Tax=Saccoglossus kowal... [more]
A0A4D9CSH4_9STRA3.610e-545.45FYVE-type domain-containing protein n=1 Tax=Nannoc... [more]
W7TLS0_9STRA3.820e-545.45Zinc finger FYVE-type protein n=1 Tax=Nannochlorop... [more]
A0A7S1KDW5_9ALVE7.250e-537.74Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118307contigH-elongata_contig118307:116..340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7G1H8
Preferred namePI4KB
KEGG rclassRC00002,RC00078
KEGG koko:K19801
KEGG ReactionR03361
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
KEGG ModuleM00130
GOsGO:0000003,GO:0000139,GO:0000212,GO:0000226,GO:0000280,GO:0000910,GO:0000916,GO:0003674,GO:0003824,GO:0004430,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006464,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006996,GO:0007010,GO:0007017,GO:0007030,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007423,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008610,GO:0008654,GO:0009058,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010259,GO:0010604,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016567,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0019637,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0023052,GO:0030029,GO:0030036,GO:0030258,GO:0030725,GO:0030726,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0033206,GO:0035295,GO:0035556,GO:0036211,GO:0036213,GO:0042176,GO:0042710,GO:0043062,GO:0043063,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043583,GO:0044010,GO:0044011,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045017,GO:0045732,GO:0046474,GO:0046486,GO:0046488,GO:0046834,GO:0046854,GO:0048015,GO:0048017,GO:0048137,GO:0048232,GO:0048285,GO:0048471,GO:0048513,GO:0048518,GO:0048609,GO:0048731,GO:0048839,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051703,GO:0051704,GO:0051716,GO:0052742,GO:0060255,GO:0060872,GO:0061640,GO:0061982,GO:0061983,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0071889,GO:0071944,GO:0080090,GO:0090175,GO:0090407,GO:0090605,GO:0090609,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0140013,GO:1901564,GO:1901576,GO:1903046,GO:1905330,GO:2000026,GO:2000027
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0903@2759,KOG1818@1,KOG1818@2759
EC2.7.1.67
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118307.1414.1prot_H-elongata_contig118307.1414.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118307 116..340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.8161907-CDS-H-elongata_contig118307:115..3401622929690.8161907-CDS-H-elongata_contig118307:115..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118307 116..340 +
1691679120.3613966-CDS-H-elongata_contig118307:115..3401691679120.3613966-CDS-H-elongata_contig118307:115..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118307 116..340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118307.1414.1

>prot_H-elongata_contig118307.1414.1 ID=prot_H-elongata_contig118307.1414.1|Name=mRNA_H-elongata_contig118307.1414.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
VQVCTKSGAAFGLTQSRYNCSSCGEAFALEYCSQKVPLPHHGFEEAVRVC
DDCLAAQQLLAHLRYIDSHNIYLV*
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mRNA from alignment at H-elongata_contig118307:116..340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118307.1414.1 ID=mRNA_H-elongata_contig118307.1414.1|Name=mRNA_H-elongata_contig118307.1414.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig118307:116..340+ (Himanthalia elongata Himel1 dioecious)
GTACAGGTCTGCACCAAGTCCGGCGCGGCGTTTGGGCTAACACAGTCCCG
TTACAACTGTTCCAGCTGCGGAGAGGCCTTCGCTCTTGAATACTGCAGCC
AAAAGGTGCCACTACCACATCATGGCTTTGAGGAGGCCGTCCGCGTTTGC
GACGATTGCCTTGCAGCACAGCAACTCCTCGCCCATCTCAGGTATATAGA
TTCACATAATATATACCTGGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig118307:116..340+

>mRNA_H-elongata_contig118307.1414.1 ID=mRNA_H-elongata_contig118307.1414.1|Name=mRNA_H-elongata_contig118307.1414.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig118307:116..340+ (Himanthalia elongata Himel1 dioecious)
GTACAGGTCTGCACCAAGTCCGGCGCGGCGTTTGGGCTAACACAGTCCCG
TTACAACTGTTCCAGCTGCGGAGAGGCCTTCGCTCTTGAATACTGCAGCC
AAAAGGTGCCACTACCACATCATGGCTTTGAGGAGGCCGTCCGCGTTTGC
GACGATTGCCTTGCAGCACAGCAACTCCTCGCCCATCTCAGGTATATAGA
TTCACATAATATATACCTGGTATAAGTACAGGTCTGCACCAAGTCCGGCG
CGGCGTTTGGGCTAACACAGTCCCGTTACAACTGTTCCAGCTGCGGAGAG
GCCTTCGCTCTTGAATACTGCAGCCAAAAGGTGCCACTACCACATCATGG
CTTTGAGGAGGCCGTCCGCGTTTGCGACGATTGCCTTGCAGCACAGCAAC
TCCTCGCCCATCTCAGGTATATAGATTCACATAATATATACCTGGTATAA
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