mRNA_H-elongata_contig11825.1407.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11825.1407.1
Unique NamemRNA_H-elongata_contig11825.1407.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: D8LE32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE32_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 7.050e-84
Identity = 137/218 (62.84%), Postives = 160/218 (73.39%), Query Frame = 1
Query:    1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHMIDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIKAHAGALTTMI----VMRYALATGSADGNIKLWTSSLEMARCIDVKALG 642
            +VCSGE GA+PRVCVWCAET   +       R+                 P  + LVVS+G+D AHSVAVFHW+SR+TLFTAPSGPEPVL  H++ EN+FVSCGVDH+R WTR  G FEV++GIFGRKGA QPMLCC SLGD+ +++VLTGSTSGH+YVWEGRNCT CIKAH GA+  M          LATGSADG ++LWTSSLEMA CIDVKALG
Sbjct:  129 IVCSGEFGARPRVCVWCAETSPLVK-----ERD-----------------PRHYKLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPEPVLGCHVVHENLFVSCGVDHLRLWTRVGGRFEVEKGIFGRKGARQPMLCCISLGDEGSEMVLTGSTSGHLYVWEGRNCTRCIKAHTGAIMAMARGDGTEHQGLATGSADGKVQLWTSSLEMAVCIDVKALG 324          
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: A0A835ZKM6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKM6_9STRA)

HSP 1 Score: 152 bits (383), Expect = 9.550e-39
Identity = 88/221 (39.82%), Postives = 123/221 (55.66%), Query Frame = 1
Query:    1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAH--SVAVFHWRSRSTLFTAP---SGPEPVLDSHMIDENMFVSCGVDHVRFWTRTD-GP-FEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIKAHAGALTTMIV-MRYALATGSADGNIKLWTSSLEMARCIDVKAL 639
            +V +G++G +P++ VWCAETC  L  FRG H  GI+ + FSPD            L +S+G +P    S+AV HW S++T+FT+    +G   +  +     + F +CGVDHV  W R+  GP FE   G+FG  G  Q  LCC  LG D   +  TG  SGH+ +WEGRNCT C+K HA A+T +      A  TG+ADG         ++A C D ++L
Sbjct:  431 VVATGQLGRRPKLAVWCAETCTLLGSFRGVHGSGIALVRFSPDAA----------LTLSVGMEPGPEVSLAVRHWPSQTTIFTSTCSGAGAPTIAVTFAGGGDRFATCGVDHVTLWDRSSTGPGFERSTGVFGPTGLQQTQLCC--LGFDGGAVA-TGGGSGHVSLWEGRNCTKCVKGHAAAVTVIAAGAGGAFVTGAADG---------KLAACFDTRSL 629          
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: A0A7S1CBA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBA4_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.800e-34
Identity = 71/219 (32.42%), Postives = 114/219 (52.05%), Query Frame = 1
Query:    4 VCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSP-DGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHMIDENMFVSCGVDHVRFW---TRTDGPFEVDQGIFGRKG--ALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIKAHAGALTTMIVMRYALATGSADGNIKLWTSSLEMARCIDVKALG 642
            V +G+MG KPRV VW  +T E +S+  GFHR  +  + F   DG+          L+ ++G+D  H++ V+ W     +++  S    VL    +D N  V+ GV H+ FW   +RT       +G++GR     +QP++  + + D    ++++G+ SGH+Y W+GRNC   +KAH   +  M      L TG  DG +++WT SLE     D+   G
Sbjct:  181 VATGQMGRKPRVVVWRTDTMETVSVIEGFHRRAVCAVAFDKKDGR----------LLATVGQDDDHTLFVYDWEKERKIYSEKSDKNKVLAITWLDNNTLVTAGVKHILFWDLKSRTK-----KKGLWGRAKNVKIQPLMSLAPIND--GAMLVSGTASGHIYAWDGRNCVRAVKAHDANVAAMWSCNAGLVTGGKDGKVRIWTHSLEPKNVFDIATFG 382          
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: A0A7S3M6P9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6P9_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.340e-34
Identity = 70/213 (32.86%), Postives = 114/213 (53.52%), Query Frame = 1
Query:    1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHMIDENMFVSCGVDHVRFWTRTD--GPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIKAHAGALTTMIVMRY-------ALATGSADGNIKLWTSSLEM 612
            +  SGE GA+P V VW  +T   LS  +GFHR G++ + FSPD +           +V++G D  H +AV+ WR++  L+++ +  +PV D   +  ++  SCG  H+ FW  ++  G F+  +G FG     + + C   +G    K V TGS +G +Y+WEGRN  + IK H GA+    V+ +        L T  ++G + +W S +E+
Sbjct:   20 IAASGECGARPAVHVWDVDTRTTLSTLQGFHRNGVAQLDFSPDKEK----------LVTLGMDSYHCLAVYRWRTQERLWSSRTTVDPVHDVRFLSNDIIASCGHVHITFWRESNNSGVFKRYRGQFGTAVKPETLWCVGVVG----KTVFTGSETGMIYIWEGRNLINSIKGHTGAIYACHVIDHKDEEKENGLVTACSEGKVLVWNSKMEL 218          
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: A0A2R5G5S9_9STRA (Echinoderm microtubule-associated protein-like 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S9_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.180e-33
Identity = 79/223 (35.43%), Postives = 118/223 (52.91%), Query Frame = 1
Query:    4 VCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVL---------DSHMIDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEG-RNCTSCIKAHAGALTTMIVMRYALATGSADGNIKLWTSSLEMARCIDVKALG 642
            V +GE G  P++ +W A T + +   RG H  GI  + FSP+             +VS+G+DP H+VA++ W +R+ +F+A S    VL         ++       FV+CG DH+ FW + D   +  +G+FG+ GA Q ML  +    +N   +++GS SGH+YVW+G RN    IK H  A+T +      L +G ADG I+LW+  LE     DV  LG
Sbjct:  369 VATGERGHPPKIHIWDASTMKIIVTLRGAHAGGIGCLAFSPEQGG--------RWLVSVGQDPEHTVALYDWEARTLVFSAKSTRSRVLSCIFRWPAKETSAGAPPTFVTCGEDHMSFWNQDDNRRQ-KKGVFGKIGAPQSMLSLACHPKNNR--IISGSLSGHLYVWDGNRNLQRTIKGHDSAVTALYFHSTGLLSGGADGKIRLWSLDLEQGAIFDVAGLG 580          
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: UPI0009E5D2B7 (echinoderm microtubule-associated protein-like 6 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5D2B7)

HSP 1 Score: 130 bits (327), Expect = 3.020e-31
Identity = 69/213 (32.39%), Postives = 110/213 (51.64%), Query Frame = 1
Query:    1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHM--IDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCI-KAHAGALTTMIVMRYALATGSADGNIKLWTSSLEMARCIDV 630
            LV +G++G  P +CVW  + C+ +SI +  H+ G++ + F+  G           L+VS+G +  H +AV+ WR    L T     + + D       EN+ VSCGV H++FWT         +G+FG+ G +Q  LC +   +D   +  +G+ SG +Y W+G N +  I  AH GA+ TM       ATGS DG + LW +  +    +D+
Sbjct:   75 LVATGQVGKDPYICVWDTKACQTVSILKDTHQRGVTCLAFNNTG----------TLLVSVGLEDYHLIAVWDWRKGRVLATVRGHTDRIFDIQFNPYQENVLVSCGVKHIKFWTLRGNALNPKKGVFGKAGEIQTNLCLAFGPND---VTYSGTLSGEIYKWKGHNLSGTIPNAHTGAIFTMHGNNDGYATGSKDGTVILWDNGFKPITKLDM 274          
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: A0A2B4RJM9_STYPI (Echinoderm microtubule-associated protein-like 6 n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RJM9_STYPI)

HSP 1 Score: 129 bits (324), Expect = 7.480e-31
Identity = 68/206 (33.01%), Postives = 110/206 (53.40%), Query Frame = 1
Query:    1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHM--IDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCI-KAHAGALTTMIVMRYALATGSADGNIKLWTSSLE 609
            LV +G++G  P VCVW ++TC+ +SI +  H+ G++ + F+  G           L+VS+G +  H ++V+ WR    L +     + + D       EN+ VSCGV H++FWT         +G+FG+ G +Q  LC +   +D   +  +G+ SG +Y W+G N +  I  AH GA+ TM       ATGS DG + LW ++ +
Sbjct:   75 LVATGQVGKDPYVCVWDSKTCQTVSILKDAHQRGVTCLAFNNTG----------TLLVSVGLEDYHLISVWDWRKGRALASVRGHTDRIFDIQFNPYQENLLVSCGVKHIKFWTLCGNALNPKKGVFGKAGEIQTNLCLAFGPND---VTYSGTLSGEIYKWKGHNLSGTIPNAHNGAIFTMHGNSDGYATGSKDGTVILWDNNFK 267          
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: UPI001E1D42AF (LOW QUALITY PROTEIN: echinoderm microtubule-associated protein-like 6 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D42AF)

HSP 1 Score: 124 bits (311), Expect = 4.130e-29
Identity = 64/201 (31.84%), Postives = 101/201 (50.25%), Query Frame = 1
Query:    1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHM--IDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIKA-HAGALTTMIVMRYALATGSADGNIKLW 594
            L+ +G+ G  P +C+W + +    SI +G H  G+  + F  DG          N +VS+G DP  ++ V+ W+    + T     + V D       +N+ VSCGV H++FW+         +GIFG++G +Q +LC S    D   I  +G+  G +Y+W G      I+A H GA+ +M +     +TGS DG  KLW
Sbjct:   75 LIATGQTGKSPYICIWDSISLNTCSILKGGHTHGVGAVSFDKDG----------NRLVSVGIDPQATICVWDWKKGKVIATVRGHTDRVFDVKFNPYQDNVIVSCGVKHIKFWSLCGNALSAKKGIFGKEGEIQTILCVSFGPSD---ITYSGTLGGDVYIWRGNKLDRVIQAAHKGAIYSMDMSEEGYSTGSKDGTAKLW 262          
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: UPI000719B3DE (LOW QUALITY PROTEIN: echinoderm microtubule-associated protein-like 6 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719B3DE)

HSP 1 Score: 121 bits (303), Expect = 4.830e-28
Identity = 68/207 (32.85%), Postives = 104/207 (50.24%), Query Frame = 1
Query:    1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDS--HMIDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIK-AHAGALTTMIVMRYALATGSADGNIKLWTSSLEM 612
            +VC+G++G  P +CVW + T + LSI +  H  GI+ I F  DG          N +VS+G D   +V V+ WR    L T     + V+D   H   EN  VSCGV H++FW          +G+FG+   ++ +LC +    D   +  +G TSG++Y W+G    + I+ AH GA+ +M        TG  DG +  W+S   +
Sbjct:   76 IVCTGQIGKSPYMCVWESVTMKTLSILKDGHTTGIAAIDFCNDG----------NRLVSVGLDNYSTVNVWDWRKGRILATTRGHSDRVIDIQFHRFTENRIVSCGVKHIKFWNLCGNSLTCKKGVFGKLEKIETVLCLAFASGD---VTYSGMTSGNIYKWQGTKLKNVIEDAHKGAVYSMDTCEEGFVTGGKDGFVITWSSDFNI 269          
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: B3SCP1_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SCP1_TRIAD)

HSP 1 Score: 120 bits (301), Expect = 8.990e-28
Identity = 65/206 (31.55%), Postives = 103/206 (50.00%), Query Frame = 1
Query:    1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHM--IDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIK-AHAGALTTMIVMRYALATGSADGNIKLWTSSLE 609
            LV +G++G  P +CVW   T +A+SI +  ++ GI+ + F+ +G          +L+VS+G + +H +AV+ W     L + P   E V D        N  VSCGV H+ FW+         +GIFGR G +Q +LC +   D    I+ +G+ SG +Y W         + AH  A+ T+        TGS DG ++LW +  +
Sbjct:   75 LVATGQVGNSPYICVWDTGTTQAVSILKDSNKRGIAGLAFNGNG----------SLLVSVGLEDSHQIAVWDWAKGRILASVPGHTERVFDVQFNPFVNNQLVSCGVKHINFWSLCGNALMAKKGIFGRAGEIQTLLCLAFAPDS---IIYSGTLSGDIYKWRNHELIHNYQNAHRSAIFTIFQCNDGYTTGSRDGTVRLWDTEFK 267          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE32_ECTSI7.050e-8462.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZKM6_9STRA9.550e-3939.82WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S1CBA4_9STRA2.800e-3432.42Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3M6P9_9STRA4.340e-3432.86Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2R5G5S9_9STRA1.180e-3335.43Echinoderm microtubule-associated protein-like 1 n... [more]
UPI0009E5D2B73.020e-3132.39echinoderm microtubule-associated protein-like 6 n... [more]
A0A2B4RJM9_STYPI7.480e-3133.01Echinoderm microtubule-associated protein-like 6 n... [more]
UPI001E1D42AF4.130e-2931.84LOW QUALITY PROTEIN: echinoderm microtubule-associ... [more]
UPI000719B3DE4.830e-2832.85LOW QUALITY PROTEIN: echinoderm microtubule-associ... [more]
B3SCP1_TRIAD8.990e-2831.55Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11825contigH-elongata_contig11825:5054..7071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.5
Seed ortholog evalue8.3e-71
Seed eggNOG ortholog2880.D8LE32
KEGG koko:K18595,ko:K18598
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size642
Cds size624
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11825.1407.1prot_H-elongata_contig11825.1407.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11825 5054..7053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.8810685-CDS-H-elongata_contig11825:5053..51431622929689.8810685-CDS-H-elongata_contig11825:5053..5143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11825 5054..5143 -
1691679119.871428-CDS-H-elongata_contig11825:5053..51431691679119.871428-CDS-H-elongata_contig11825:5053..5143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11825 5054..5143 -
1622929689.89508-CDS-H-elongata_contig11825:6034..62191622929689.89508-CDS-H-elongata_contig11825:6034..6219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11825 6035..6219 -
1691679119.8807888-CDS-H-elongata_contig11825:6034..62191691679119.8807888-CDS-H-elongata_contig11825:6034..6219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11825 6035..6219 -
1622929689.9102275-CDS-H-elongata_contig11825:6387..65891622929689.9102275-CDS-H-elongata_contig11825:6387..6589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11825 6388..6589 -
1691679119.8887804-CDS-H-elongata_contig11825:6387..65891691679119.8887804-CDS-H-elongata_contig11825:6387..6589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11825 6388..6589 -
1622929689.925338-CDS-H-elongata_contig11825:6695..67941622929689.925338-CDS-H-elongata_contig11825:6695..6794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11825 6696..6794 -
1691679119.8969016-CDS-H-elongata_contig11825:6695..67941691679119.8969016-CDS-H-elongata_contig11825:6695..6794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11825 6696..6794 -
1622929689.9428227-CDS-H-elongata_contig11825:7005..70531622929689.9428227-CDS-H-elongata_contig11825:7005..7053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11825 7006..7053 -
1691679119.905463-CDS-H-elongata_contig11825:7005..70531691679119.905463-CDS-H-elongata_contig11825:7005..7053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11825 7006..7053 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.9536173-UTR-H-elongata_contig11825:7053..70711622929689.9536173-UTR-H-elongata_contig11825:7053..7071Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11825 7054..7071 -
1691679119.9151306-UTR-H-elongata_contig11825:7053..70711691679119.9151306-UTR-H-elongata_contig11825:7053..7071Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11825 7054..7071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11825.1407.1

>prot_H-elongata_contig11825.1407.1 ID=prot_H-elongata_contig11825.1407.1|Name=mRNA_H-elongata_contig11825.1407.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
MGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNL
VVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHMIDENMFVSCGVD
HVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGH
MYVWEGRNCTSCIKAHAGALTTMIVMRYALATGSADGNIKLWTSSLEMAR
CIDVKALG
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mRNA from alignment at H-elongata_contig11825:5054..7071-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11825.1407.1 ID=mRNA_H-elongata_contig11825.1407.1|Name=mRNA_H-elongata_contig11825.1407.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2018bp|location=Sequence derived from alignment at H-elongata_contig11825:5054..7071- (Himanthalia elongata Himel1 dioecious)
CTCGTGTGCTCTGGGGAGATGGGGGCGAAGCCCCGCGTGTGTGTTTGGTG CGCTGAGACATGTGAGGTAAGTCTATCGCACACTTGAGTGTGTCATTTCT TTTGTATTGCTCTCTCAGTCAGCATCAGATACACCACGAGGATCTACAAA GGAGCTCTAGATAACGTCTCCCATCGTTGGCCGTGAATTGTGCATAAATG TGGAGCTAAAAGTACGCAGCGTGCGTCGTATCGTTGTCAATTCCACCTAC ACGCCTTCGATGTGTCTTGCGTAACAGGCTCTATCGATCTTCCGGGGCTT CCACCGCGAGGGCATCAGTAACATTTGCTTTTCTCCCGATGGACAGGCGA GTGGCACTTCCCCCTCTTTTTTCAATGTAAAGCTCCCGCCTAAGATGAGA TTTTGACTTCTATAAATAAGTTCGATAAGCGATGGGTTATCACCATTGAC TCTGTACGTTTCCCTTGCGGTGTTTATTTCAGCTTGTTGTGTCAATAGGG GAGGACCCCGCACACTCAGTGGCCGTCTTCCACTGGCGATCGCGTTCTAC GCTCTTCACAGCACCCTCCGGTCCAGAGCCTGTTTTAGATTCCCACATGA TAGACGAGAACATGTTCGTCTCATGCGGAGTGGACCATGTCAGGTTCTGG ACTCGGACGGACGGACCCTTTGAAGTGGATCAAGGTGAGTGCGATAACCC CTCGTTGACACCTGTTGCGGCAAACGAACGCCGAAATATAATGTGGAGGA TGGCTAGCTTTAATTGCACGTAATGATCCGTGCGTAGTGATAAGCTATCT CCCAGGTTTACCACGTGCACCTTCTCGACGTATGTAACCACATATTATAT AGGGATATTTGGGCGGAAAGGCGCCCTGCAGCCCATGCTGTGCTGCTCAA GCTTGGGAGACGATAATGCCAAGATTGTGTTGACTGGTTCCACCTCTGGG CACATGTACGTGTGGGAAGGCCGCAATTGCACCAGCTGTATCAAGGCGCA CGCTGGTGCCCTGACCACGATGATAGTGATGAGGTATGTACTGTTTTTGT TTTTCAGACTTCGAAAATATGTTTCGGCATTGTTNNNNNNNNNNAGACAA GACAAAGTAGAAGCTTTAATTATTTGATTTCATCCAAGAAGGACGAATTA CGAGCCACCAACGCCCCGTGGGCTAAGCAAACACGTGACTGAAATCACGT GCGCAGTCGTTTGTAATATTTGTAGAGACTCGCTACGTGTTTTTCACGTG TTGTAGGCCACTCAGTTGGTTGCTAGTCCCGTATTTGACCTCGGTAGCAC GATGATTAGTTGCAAAAGGGCCAATGATGAACCACAACGATCTTCACACT CGCAGCTGATGGAGTGGGAGCGAAAGTCTCCGAGAGATCTATGTTATGAA TCTGACCAAAATTACTTGTTACCATCCAGGATTTCCGCTTGATTACGTTT CCTGGTCGCCAGTCTTCCAATTCCTGATAGATTTACCCGTCACGACATTA TTGACGTTATTTGGCAACTATCCCTTTTTCGGATGTCTAAAAGCATTTTA GTCCCACGGACCGCTACATTCGGAATAATATTCAGATCGGTTACAAATTC TCGTCGTACTGTGTCTTTGTACCTTAATTCTTTACAGTGTATAATATAAT ATATCACGTATATCAAATCATAAAACAATATATCACTCTATCTAATACCT GGTATAAGAGGCTTTCTCGTCTGTTATTTTTTTCCTCTCTTTCTCTTCTT TTATTTGTTTTTGGATGTAGCGATGGTATAAAAAGGGAAGCTAGATTCTG TGACCACGGGCTCGAGGTATCGGACTTATGTGCGGAAATAATAATAATAG TAATAATAATAATAATGTTGCATCATATCACATATTATCACATCACATCA CACTAGGGAAGAAGGCGTGGAAAAACAGGCGCTGGCCACGGGCAGCGCGG ACGGAAATATCAAACTGTGGACATCGTCCCTGGAAATGGCAAGGTGTATC GACGTCAAGGCACTTGGA
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Coding sequence (CDS) from alignment at H-elongata_contig11825:5054..7071-

>mRNA_H-elongata_contig11825.1407.1 ID=mRNA_H-elongata_contig11825.1407.1|Name=mRNA_H-elongata_contig11825.1407.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig11825:5054..7071- (Himanthalia elongata Himel1 dioecious)
ATGGGGGCGAAGCCCCGCGTGTGTGTTTGGTGCGCTGAGACATGTGAGAT
GGGGGCGAAGCCCCGCGTGTGTGTTTGGTGCGCTGAGACATGTGAGGCTC
TATCGATCTTCCGGGGCTTCCACCGCGAGGGCATCAGTAACATTTGCTTT
TCTCCCGATGGACAGGCGAGTGGCACTTCCCCCTCTTTTTTCAATGCTCT
ATCGATCTTCCGGGGCTTCCACCGCGAGGGCATCAGTAACATTTGCTTTT
CTCCCGATGGACAGGCGAGTGGCACTTCCCCCTCTTTTTTCAATCTTGTT
GTGTCAATAGGGGAGGACCCCGCACACTCAGTGGCCGTCTTCCACTGGCG
ATCGCGTTCTACGCTCTTCACAGCACCCTCCGGTCCAGAGCCTGTTTTAG
ATTCCCACATGATAGACGAGAACATGTTCGTCTCATGCGGAGTGGACCAT
GTCAGGTTCTGGACTCGGACGGACGGACCCTTTGAAGTGGATCAAGCTTG
TTGTGTCAATAGGGGAGGACCCCGCACACTCAGTGGCCGTCTTCCACTGG
CGATCGCGTTCTACGCTCTTCACAGCACCCTCCGGTCCAGAGCCTGTTTT
AGATTCCCACATGATAGACGAGAACATGTTCGTCTCATGCGGAGTGGACC
ATGTCAGGTTCTGGACTCGGACGGACGGACCCTTTGAAGTGGATCAAGGG
ATATTTGGGCGGAAAGGCGCCCTGCAGCCCATGCTGTGCTGCTCAAGCTT
GGGAGACGATAATGCCAAGATTGTGTTGACTGGTTCCACCTCTGGGCACA
TGTACGTGTGGGAAGGCCGCAATTGCACCAGCTGTATCAAGGCGCACGCT
GGTGCCCTGACCACGATGATAGTGATGAGGTATGGATATTTGGGCGGAAA
GGCGCCCTGCAGCCCATGCTGTGCTGCTCAAGCTTGGGAGACGATAATGC
CAAGATTGTGTTGACTGGTTCCACCTCTGGGCACATGTACGTGTGGGAAG
GCCGCAATTGCACCAGCTGTATCAAGGCGCACGCTGGTGCCCTGACCACG
ATGATAGTGATGAGGTATGCGCTGGCCACGGGCAGCGCGGACGGAAATAT
CAAACTGTGGACATCGTCCCTGGAAATGGCAAGGTGTATCGACGTCAAGG
CACTTGGAGCGCTGGCCACGGGCAGCGCGGACGGAAATATCAAACTGTGG
ACATCGTCCCTGGAAATGGCAAGGTGTATCGACGTCAAGGCACTTGGA
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