mRNA_H-elongata_contig118196.1404.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118196.1404.1
Unique NamemRNA_H-elongata_contig118196.1404.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118196.1404.1 vs. uniprot
Match: A0A6H5K7K2_9PHAE (NTP_transf_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K2_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 7.750e-40
Identity = 94/204 (46.08%), Postives = 116/204 (56.86%), Query Frame = 1 
Query:    1 QEHASMTSEADASNPPNP-----PPFVVDGIDVSFRIPKAGKAIAQPLPPRMPTGGEH---------GRAVRQRTSDSD----------DVTTGAA-GAEAGKKGIGDTQEKCPDRLCVEDAGVVDLLSGYFRYFAKEFRHITQVMTLRPKNILNKRKVWTRKKLWRTSIEDPFETFDSINPHDLGTVISRSGQALLNQEWMRG 537
            +EH S + EA A   P         F+V+GIDVSF      K  ++ LPP    G  H         GRA+    S++D          DV    A G+ +G +G           L + DA + DLL GYFRY A++F H  +VMTLRPK ILNK  VW R KLWRTS+EDPFETFDSINPHDLGTV+SR+GQ LL+Q+W RG
Sbjct:  666 KEHKSFSKEAGAQPTPRAFDHGDGAFIVEGIDVSF-----SKINSEALPPCPLPGENHSPPLPRDTAGRAIHGNASEADSNQAVADSYPDVANDTANGSRSGSEG-----------LAIRDATICDLLLGYFRYLAEDFCHAKEVMTLRPKTILNKADVWARPKLWRTSVEDPFETFDSINPHDLGTVLSRTGQTLLHQQWKRG 853
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BLAST of mRNA_H-elongata_contig118196.1404.1 vs. uniprot
Match: D7G160_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G160_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 3.660e-37
Identity = 93/207 (44.93%), Postives = 113/207 (54.59%), Query Frame = 1 
Query:    1 QEHASMTSEADASNPPNPPPF-------VVDGIDVSFRIPKAGKAIAQPLP-----PRMPTGGEHGRAVRQRTSDSDDVTTGAAGAEAGKKGIGDTQEKCPDR----------LCVEDAGVVDLLSGYFRYFAKEFRHIT------QVMTLRPKNILNKRKVWTRKKLWRTSIEDPFETFDSINPHDLGTVISRSGQALLNQEWMRG 537
            +EH S + EA A   P PP F       +V+GIDVSF     G     PLP     P +P      RA+    S++D             +G+ D+ +   D           L V DA + DLL GYFR+ A++F H        QVMTLRPK ILNK  VW R KLWRTS+EDPFETFDS NPHDLGTV+SR+GQ LL+QEW RG
Sbjct:  658 KEHKSFSKEAGAH--PTPPAFDHGDSAFIVEGIDVSFSNTNPGTLPPCPLPVENHCPPLPRDTAD-RAIHGNASEADS-----------NQGVADSYDTANDTTNGSRSGSEGLAVRDATICDLLLGYFRHLAEDFCHAKEQQRQQQVMTLRPKTILNKADVWARPKLWRTSVEDPFETFDSTNPHDLGTVLSRTGQTLLHQEWKRG 850
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BLAST of mRNA_H-elongata_contig118196.1404.1 vs. uniprot
Match: D7G5D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.180e-10
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:  247 DTQEKCPDRLCVEDAGVVDLLSGYFRYFA--------KEFRHITQVMTLRPKNILNKRKVWTRKKL-WRTSIEDPFETFDSINPHDLGTVISRSGQALLNQEWMRG 537
            ++  +C   L   D  +VD++ GYFRY+A        + F H +QV +LRP  +L K  VW  +   WRTS+ED F+T+D     DLG  +    Q+ L  EW RG
Sbjct:  650 ESSTRCRQVLGWSDLLIVDIILGYFRYYAHKRRGYVGRTFNHHSQVASLRPAMVLPKA-VWKGQTPGWRTSVEDAFKTYDGRCALDLGNELDIDSQSRLQNEWNRG 754
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BLAST of mRNA_H-elongata_contig118196.1404.1 vs. uniprot
Match: A0A7S2WW42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW42_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.010e-8
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  376 KNILNKRKVWTRKKLWRTSIEDPFETFDSINPHDLGTVISRSGQALLNQEWMR 534
            K + NK ++W+  KLWR S+EDPFE  DSI PHDLG V+S+ GQ  L    +R
Sbjct:  384 KLLRNKHEIWSSTKLWRLSVEDPFEHHDSILPHDLGQVVSQEGQTRLKNVVLR 436
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BLAST of mRNA_H-elongata_contig118196.1404.1 vs. uniprot
Match: A0A7S4QEU5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QEU5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.450e-6
Identity = 27/74 (36.49%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:  295 VVDLLSGYFRYFAKEFRHITQVMTLRPKNILNKRKVWTRKKLWRTSIEDPFETFDSINPHDLGTVISRSGQALL 516
            V  LL G+F ++A +F      +++R       + V+ R ++WR SIEDPFE  +S  PHDLG  ++  GQ ++
Sbjct:  769 VTVLLCGFFHFYAHDFPQSMVSVSIRLGRCALLKTVFVRSRMWRLSIEDPFEIHNSHCPHDLGMHLNERGQEVI 842
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118196.1404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K7K2_9PHAE7.750e-4046.08NTP_transf_2 domain-containing protein n=1 Tax=Ect... [more]
D7G160_ECTSI3.660e-3744.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5D0_ECTSI4.180e-1037.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WW42_9STRA3.010e-852.83Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S4QEU5_9STRA7.450e-636.49Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118196contigH-elongata_contig118196:48..1431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue2.4e-31
Seed eggNOG ortholog2880.D7G160
KEGG koko:K13291
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG2277@2759
EC2.7.7.52
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotidyl transferase domain
Ec32 orthologEc-22_000020.1
Exons3
Model size540
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118196.1404.1prot_H-elongata_contig118196.1404.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118196 48..1416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.6077006-CDS-H-elongata_contig118196:47..1701622929689.6077006-CDS-H-elongata_contig118196:47..170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118196 48..170 -
1691679119.756099-CDS-H-elongata_contig118196:47..1701691679119.756099-CDS-H-elongata_contig118196:47..170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118196 48..170 -
1622929689.6265535-CDS-H-elongata_contig118196:703..7631622929689.6265535-CDS-H-elongata_contig118196:703..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118196 704..763 -
1691679119.7671216-CDS-H-elongata_contig118196:703..7631691679119.7671216-CDS-H-elongata_contig118196:703..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118196 704..763 -
1622929689.6430786-CDS-H-elongata_contig118196:1074..14161622929689.6430786-CDS-H-elongata_contig118196:1074..1416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118196 1075..1416 -
1691679119.7760658-CDS-H-elongata_contig118196:1074..14161691679119.7760658-CDS-H-elongata_contig118196:1074..1416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118196 1075..1416 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.6571996-UTR-H-elongata_contig118196:1416..14311622929689.6571996-UTR-H-elongata_contig118196:1416..1431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118196 1417..1431 -
1691679119.7856636-UTR-H-elongata_contig118196:1416..14311691679119.7856636-UTR-H-elongata_contig118196:1416..1431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118196 1417..1431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118196.1404.1

>prot_H-elongata_contig118196.1404.1 ID=prot_H-elongata_contig118196.1404.1|Name=mRNA_H-elongata_contig118196.1404.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MTSEADASNPPNPPPFVVDGIDVSFRIPKAGKAIAQPLPPRMPTGGEHGR
AVRQRTSDSDDVTTGAAGAEAGKKGIGDTQEKCPDRLCVEDAGVVDLLSG
YFRYFAKEFRHITQVMTLRPKNILNKRKVWTRKKLWRTSIEDPFETFDSI
NPHDLGTVISRSGQALLNQEWMRG*
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mRNA from alignment at H-elongata_contig118196:48..1431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118196.1404.1 ID=mRNA_H-elongata_contig118196.1404.1|Name=mRNA_H-elongata_contig118196.1404.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1384bp|location=Sequence derived from alignment at H-elongata_contig118196:48..1431- (Himanthalia elongata Himel1 dioecious)
CAGGAGCATGCATCGATGACATCCGAGGCGGATGCGTCCAATCCGCCCAA
TCCGCCCCCATTCGTAGTCGATGGGATCGACGTATCCTTCCGCATCCCCA
AAGCGGGGAAGGCGATAGCGCAGCCCCTACCGCCGAGAATGCCTACAGGC
GGCGAGCACGGCAGGGCCGTGCGGCAGCGCACATCAGATTCCGATGACGT
CACGACCGGGGCGGCGGGAGCCGAAGCGGGGAAGAAAGGCATTGGAGACA
CCCAAGAAAAATGCCCCGATCGGCTGTGCGTGGAGGACGCCGGGGTCGTC
GATCTCTTGTCCGGATATTTCCGGTATTTTGCGAAAGAGTTTCGTCACAT
CACGCAGGTAAAAACGCCTCCCGGCTGTTGACTCAACTCCTGTTGGAAGT
ATTAGCGCGCGGGTATGTCGTTATTGTTGGTCCCCTGGACTGCACCTCTT
ATGATGCCAAGAAGGCGTGGATGTTCGAAGATTTGGAATGAGCCCAAAGT
CTTTTACAAATAATAGTTCGTTTGGATAGAATGTGGTCCCGGAATACATT
CCACGACCGGGACTGTCTCAAGAGAGGGGGAAGGGGGGGGGGCTGCTTCG
GTTGTATCCACCCTCCCGAAGGTTTGATCGAAATAAAATTAATGTTGTCC
GTTCTCCCGCTTGGTCAGGTGATGACGCTGCGTCCGAAGAATATTCTGAA
CAAGCGGAAAGTGTGGACAAGAAAAAAGGTACTGCGAGCTATCCTCTGTT
TTCGACATATTTTGTTTTTATTCTATACACCTTATTTCAGAAAATATTTC
ACTAAATTTTGAGAGGGGAAGAGAATGTGTGTGCCCCCCCCCCTCCCCCC
TAGTTCAGGAAGCAGGCGTTACTACATAAGCGGCTCCCCCTAGTTGTGGG
GCTGACAATATCACCCACTTGAGACGAATTTGATTTAAACGAACGGATTT
TGCCACTACCCCACATAAAAAGCTATAACATGAGATACAGTTGTCCTTAA
CCCATAAATTTTGCTTTTCGGTGGTTATTTTTTCTTTTTTCCTAGTGAGA
ATTTTTCTCCCTGCTTTCCATAAACAGGATAATTTTAGAAAGCCTGATCC
TGGAAAGGGGATGTTGTTGTCCCCGTACATATCGCGATATTCATCACCGT
AGCATCTCGGCGCCAAGATAGGAAGTACCGTAAAAAGCAACATCCCTCCG
CTCGTGGGGAAACCCCGGGCACTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGCATGTGCAGCTGTGGCGCACCAGTATCGAGGACCCATTCGAGACGTTC
GATAGCATCAACCCTCATGACCTTGGGACTGTCATATCGCGCTCTGGTCA
AGCCCTCCTGAACCAAGAGTGGATGCGCGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig118196:48..1431-

>mRNA_H-elongata_contig118196.1404.1 ID=mRNA_H-elongata_contig118196.1404.1|Name=mRNA_H-elongata_contig118196.1404.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig118196:48..1431- (Himanthalia elongata Himel1 dioecious)
ATGACATCCGAGGCGGATGCGTCCAATCCGCCCAATCCGCCCCCATTCGT
AGTCGATGGGATCGACGTATCCTTCCGCATCCCCAAAGCGGGGAAGGCGA
TAGCGCAGCCCCTACCGCCGAGAATGCCTACAGGCGGCGAGCACGGCAGG
GCCGTGCGGCAGCGCACATCAGATTCCGATGACGTCACGACCGGGGCGGC
GGGAGCCGAAGCGGGGAAGAAAGGCATTGGAGACACCCAAGAAAAATGCC
CCGATCGGCTGTGCGTGGAGGACGCCGGGGTCGTCGATCTCTTGTCCGGA
TATTTCCGGTATTTTGCGAAAGAGTTTCGTCACATCACGCAGATGACATC
CGAGGCGGATGCGTCCAATCCGCCCAATCCGCCCCCATTCGTAGTCGATG
GGATCGACGTATCCTTCCGCATCCCCAAAGCGGGGAAGGCGATAGCGCAG
CCCCTACCGCCGAGAATGCCTACAGGCGGCGAGCACGGCAGGGCCGTGCG
GCAGCGCACATCAGATTCCGATGACGTCACGACCGGGGCGGCGGGAGCCG
AAGCGGGGAAGAAAGGCATTGGAGACACCCAAGAAAAATGCCCCGATCGG
CTGTGCGTGGAGGACGCCGGGGTCGTCGATCTCTTGTCCGGATATTTCCG
GTATTTTGCGAAAGAGTTTCGTCACATCACGCAGGTGATGACGCTGCGTC
CGAAGAATATTCTGAACAAGCGGAAAGTGTGGACAAGAAAAAAGGTGATG
ACGCTGCGTCCGAAGAATATTCTGAACAAGCGGAAAGTGTGGACAAGAAA
AAAGCTGTGGCGCACCAGTATCGAGGACCCATTCGAGACGTTCGATAGCA
TCAACCCTCATGACCTTGGGACTGTCATATCGCGCTCTGGTCAAGCCCTC
CTGAACCAAGAGTGGATGCGCGGGTAACTGTGGCGCACCAGTATCGAGGA
CCCATTCGAGACGTTCGATAGCATCAACCCTCATGACCTTGGGACTGTCA
TATCGCGCTCTGGTCAAGCCCTCCTGAACCAAGAGTGGATGCGCGGGTAA
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