mRNA_H-elongata_contig118182.1403.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118182.1403.1
Unique NamemRNA_H-elongata_contig118182.1403.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Match: A0A6H5L2P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.460e-14
Identity = 35/42 (83.33%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 IEEMISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ 126
            IEEMISMQEP +RVIRL+CLQS+TDAGIKA+KYD+LKRE+VQ
Sbjct:  441 IEEMISMQEPAMRVIRLMCLQSMTDAGIKASKYDFLKREVVQ 482
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BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Match: D7G0J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.460e-14
Identity = 35/42 (83.33%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 IEEMISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ 126
            IEEMISMQEP +RVIRL+CLQS+TDAGIKA+KYD+LKRE+VQ
Sbjct:  439 IEEMISMQEPAMRVIRLMCLQSMTDAGIKASKYDFLKREVVQ 480
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BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Match: A0A067BUK6_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BUK6_SAPPC)

HSP 1 Score: 60.8 bits (146), Expect = 1.110e-9
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 IEEMISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ 126
            +EE I +QEP+L+V+RLLCLQS+T  GIKA  YD+L+REI+Q
Sbjct:  407 LEEFIGVQEPLLKVLRLLCLQSLTSGGIKAKAYDHLRREIIQ 448
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BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Match: A0A1W0A692_9STRA (Vacuolar protein sorting-associated protein 33A n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A692_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.520e-9
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 IEEMISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ 126
            +EE I +QEP+L+V+RL+CLQS+T  GIKA  YD+L+REI+Q
Sbjct:  404 LEEFIGVQEPLLKVLRLMCLQSLTSGGIKAKSYDHLRREIIQ 445
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BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Match: A0A397E8K8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E8K8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.170e-9
Identity = 25/42 (59.52%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 IEEMISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ 126
            +EE+I  QEP+L+V+RLLCLQS+T  GIKA  +D L+RE++Q
Sbjct:   11 LEELIGCQEPLLKVLRLLCLQSLTTGGIKAKSFDLLRRELIQ 52
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BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Match: UPI001CA9D7F9 (vacuolar protein sorting-associated protein 33A n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA9D7F9)

HSP 1 Score: 59.3 bits (142), Expect = 3.890e-9
Identity = 26/42 (61.90%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 IEEMISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ 126
            IE+MI+ QEP+L+V+RLLC+QS+T++G+KA   DY KREI+Q
Sbjct:  395 IEDMIAQQEPLLKVLRLLCIQSLTNSGLKAKLLDYYKREIIQ 436
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BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Match: A0A7S2S0P1_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0P1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.920e-9
Identity = 25/42 (59.52%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 IEEMISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ 126
            +E++ISMQ+P  R++RLLCLQS+T  GIK+++YD L+RE+VQ
Sbjct:   45 LEDLISMQDPPYRILRLLCLQSLTSGGIKSSRYDSLRREVVQ 86
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BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Match: A0A024UDH5_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024UDH5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.320e-9
Identity = 25/42 (59.52%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 IEEMISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ 126
            +EE+I +QEP+L+V+RLLCLQS+T  GIKA  +D L+RE++Q
Sbjct:  405 LEELIGLQEPLLKVLRLLCLQSLTSGGIKAKSFDLLRRELIQ 446
[Close]
BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Match: A0A6G0WKR7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WKR7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.320e-9
Identity = 25/42 (59.52%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 IEEMISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ 126
            +EE+I +QEP+L+V+RLLCLQS+T  GIKA  +D L+RE++Q
Sbjct:  401 LEELIGLQEPLLKVLRLLCLQSLTSGGIKAKSFDLLRRELIQ 442
[Close]
BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Match: A0A485L5N1_9STRA (Aste57867_16533 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5N1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.320e-9
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 IEEMISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ 126
            +EE+I MQEP L+V+RLLCLQS+T  GIKA  +D L+RE++Q
Sbjct:  401 LEELIGMQEPPLKVLRLLCLQSLTSGGIKAKSFDLLRRELIQ 442
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118182.1403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2P5_9PHAE1.460e-1483.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0J5_ECTSI1.460e-1483.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067BUK6_SAPPC1.110e-964.29Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A1W0A692_9STRA1.520e-961.90Vacuolar protein sorting-associated protein 33A n=... [more]
A0A397E8K8_9STRA2.170e-959.52Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI001CA9D7F93.890e-961.90vacuolar protein sorting-associated protein 33A n=... [more]
A0A7S2S0P1_9STRA3.920e-959.52Hypothetical protein n=2 Tax=Eucampia antarctica T... [more]
A0A024UDH5_9STRA5.320e-959.52Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A6G0WKR7_9STRA5.320e-959.52Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L5N1_9STRA5.320e-961.90Aste57867_16533 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118182contigH-elongata_contig118182:1898..2023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue7.6e-10
Seed eggNOG ortholog2880.D7G0J5
KEGG koko:K20182
KEGG Pathwayko04138,map04138
EggNOG free text desc.vesicle docking involved in exocytosis
EggNOG OGsCOG5158@1,KOG1302@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size117
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.5328574-UTR-H-elongata_contig118182:1897..19061622929689.5328574-UTR-H-elongata_contig118182:1897..1906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118182 1898..1906 +
1691679119.729809-UTR-H-elongata_contig118182:1897..19061691679119.729809-UTR-H-elongata_contig118182:1897..1906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118182 1898..1906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.5518103-CDS-H-elongata_contig118182:1906..20231622929689.5518103-CDS-H-elongata_contig118182:1906..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118182 1907..2023 +
1691679119.7388933-CDS-H-elongata_contig118182:1906..20231691679119.7388933-CDS-H-elongata_contig118182:1906..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118182 1907..2023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118182.1403.1prot_H-elongata_contig118182.1403.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118182 1907..2023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118182.1403.1

>prot_H-elongata_contig118182.1403.1 ID=prot_H-elongata_contig118182.1403.1|Name=mRNA_H-elongata_contig118182.1403.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MISMQEPVLRVIRLLCLQSVTDAGIKANKYDYLKREIVQ
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mRNA from alignment at H-elongata_contig118182:1898..2023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118182.1403.1 ID=mRNA_H-elongata_contig118182.1403.1|Name=mRNA_H-elongata_contig118182.1403.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig118182:1898..2023+ (Himanthalia elongata Himel1 dioecious)
ATCGAGGAGATGATCAGCATGCAAGAGCCGGTGCTGCGCGTGATCCGCCT
GCTCTGTCTCCAGAGCGTGACAGACGCCGGCATCAAGGCCAATAAGTACG
ATTACCTCAAGCGGGAAATTGTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig118182:1898..2023+

>mRNA_H-elongata_contig118182.1403.1 ID=mRNA_H-elongata_contig118182.1403.1|Name=mRNA_H-elongata_contig118182.1403.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig118182:1898..2023+ (Himanthalia elongata Himel1 dioecious)
ATGATCAGCATGCAAGAGCCGGTGCTGCGCGTGATCCGCCTGCTCTGTCT
CCAGAGCGTGACAGACGCCGGCATCAAGGCCAATAAGTACGATTACCTCA
AGCGGGAAATTGTCCAGATGATCAGCATGCAAGAGCCGGTGCTGCGCGTG
ATCCGCCTGCTCTGTCTCCAGAGCGTGACAGACGCCGGCATCAAGGCCAA
TAAGTACGATTACCTCAAGCGGGAAATTGTCCAG
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