mRNA_H-elongata_contig117990.1393.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117990.1393.1
Unique NamemRNA_H-elongata_contig117990.1393.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117990.1393.1 vs. uniprot
Match: D7FRR2_ECTSI (BPL/LPL catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR2_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.840e-36
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 KAVQALSATLTDKLCSWASGEDSAEFALAEWSRWVDWTLPLQVRDEGRMVTPIGVAPDGRLRVVDPDTGREEILTTEYLL 240
            +AV+ LSA LT+KLCSWASG DSA  A+AEWSRWVDW+LPL++RDEGR V PIGVAPDGRLRVVDP TG EE+LTTEYLL
Sbjct:  222 EAVRELSAALTEKLCSWASGTDSASTAVAEWSRWVDWSLPLEIRDEGRAVRPIGVAPDGRLRVVDPATGEEELLTTEYLL 301
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BLAST of mRNA_H-elongata_contig117990.1393.1 vs. uniprot
Match: A0A6H5JHA5_9PHAE (BPL/LPL catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.700e-33
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 KAVQALSATLTDKLCSWASGEDSAEFALAEWSRWVDWTLPLQVRDEGRMVTPIGVAPDGRLRVVDPDTGREEILTTEYLL 240
            +AV+ LSA LT+KLCSWASG DSA  A+AEWSRWVDW+LPL++RDEGR V P+GVAPDGRLRV+DP TG EE+L TEYLL
Sbjct:  481 EAVRELSAALTEKLCSWASGTDSASTAVAEWSRWVDWSLPLEIRDEGRAVRPVGVAPDGRLRVMDPATGEEELLATEYLL 560
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BLAST of mRNA_H-elongata_contig117990.1393.1 vs. uniprot
Match: F0Y9I2_AURAN (Uncharacterized protein BPL2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9I2_AURAN)

HSP 1 Score: 70.9 bits (172), Expect = 8.100e-13
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   10 QALSATLTDKLCSWASGEDSAEFALAEWSRWVDWTLPLQVRDEGRMVTPIGVAPDGRLRVVDPDTGREEILTTEYLL 240
            +A++  L   L +WA G D A   +A WS +VDW+LPL +RD   +V+P+ + PDGRLRV     G E  L  EYLL
Sbjct:  199 EAIAKDLAAHLSTWADGVDDAPTLVAHWSHFVDWSLPLTLRDTSEVVSPVRLLPDGRLRVRPAAGGPERDLVAEYLL 275
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BLAST of mRNA_H-elongata_contig117990.1393.1 vs. uniprot
Match: A0A7S0GLW3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLW3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.880e-8
Identity = 35/90 (38.89%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:   13 ALSATLTDKLCSWASGED------------SAEFALAEWSRWVDWTLPLQVRD--EGRMVTPIGVAPDGRLRVVDPDTGREEILTTEYLL 240
            AL+  +   +CSW    D            +A+  L EW  WVDW   L VRD  +  ++ P+GV PDG+LRV   D GRE +L  +YLL
Sbjct:  175 ALANNIARDICSWIYYADEISEQGSNNKDANAKILLNEWREWVDWEKELVVRDSTDNEIIVPLGVEPDGQLRVRGQD-GRERLLMVDYLL 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117990.1393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FRR2_ECTSI1.840e-3678.75BPL/LPL catalytic domain-containing protein n=1 Ta... [more]
A0A6H5JHA5_9PHAE1.700e-3375.00BPL/LPL catalytic domain-containing protein n=1 Ta... [more]
F0Y9I2_AURAN8.100e-1345.45Uncharacterized protein BPL2 n=1 Tax=Aureococcus a... [more]
A0A7S0GLW3_9STRA1.880e-838.89Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117990contigH-elongata_contig117990:1629..1871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.2e-29
Seed eggNOG ortholog2880.D7FRR2
KEGG rclassRC00043,RC00070,RC00096,RC02896
KEGG koko:K03524
KEGG ReactionR01074,R05145
KEGG Pathwayko00780,ko01100,map00780,map01100
EggNOG free text desc.Biotin/lipoate A/B protein ligase family
EggNOG OGs2SA0E@2759,COG0340@1
EC6.3.4.15
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBiotin/lipoate A/B protein ligase
Ec32 orthologEc-00_003530.1
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929688.5162554-CDS-H-elongata_contig117990:1628..18711622929688.5162554-CDS-H-elongata_contig117990:1628..1871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117990 1629..1871 -
1691679119.3956742-CDS-H-elongata_contig117990:1628..18711691679119.3956742-CDS-H-elongata_contig117990:1628..1871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117990 1629..1871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117990.1393.1prot_H-elongata_contig117990.1393.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117990 1629..1871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117990.1393.1

>prot_H-elongata_contig117990.1393.1 ID=prot_H-elongata_contig117990.1393.1|Name=mRNA_H-elongata_contig117990.1393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
KAVQALSATLTDKLCSWASGEDSAEFALAEWSRWVDWTLPLQVRDEGRMV
TPIGVAPDGRLRVVDPDTGREEILTTEYLL*
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mRNA from alignment at H-elongata_contig117990:1629..1871-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117990.1393.1 ID=mRNA_H-elongata_contig117990.1393.1|Name=mRNA_H-elongata_contig117990.1393.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig117990:1629..1871- (Himanthalia elongata Himel1 dioecious)
AAGGCTGTCCAAGCTCTGTCCGCGACCCTTACGGATAAACTTTGCTCGTG
GGCTTCCGGCGAAGATTCTGCCGAGTTCGCACTAGCGGAATGGTCGCGCT
GGGTCGACTGGACGCTCCCCCTCCAAGTAAGGGATGAGGGGCGAATGGTG
ACACCCATTGGGGTTGCCCCCGATGGGCGTTTACGGGTGGTGGATCCTGA
CACGGGGAGGGAGGAAATCCTGACGACTGAATATCTTTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig117990:1629..1871-

>mRNA_H-elongata_contig117990.1393.1 ID=mRNA_H-elongata_contig117990.1393.1|Name=mRNA_H-elongata_contig117990.1393.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig117990:1629..1871- (Himanthalia elongata Himel1 dioecious)
AAGGCTGTCCAAGCTCTGTCCGCGACCCTTACGGATAAACTTTGCTCGTG
GGCTTCCGGCGAAGATTCTGCCGAGTTCGCACTAGCGGAATGGTCGCGCT
GGGTCGACTGGACGCTCCCCCTCCAAGTAAGGGATGAGGGGCGAATGGTG
ACACCCATTGGGGTTGCCCCCGATGGGCGTTTACGGGTGGTGGATCCTGA
CACGGGGAGGGAGGAAATCCTGACGACTGAATATCTTTTGTGAAAGGCTG
TCCAAGCTCTGTCCGCGACCCTTACGGATAAACTTTGCTCGTGGGCTTCC
GGCGAAGATTCTGCCGAGTTCGCACTAGCGGAATGGTCGCGCTGGGTCGA
CTGGACGCTCCCCCTCCAAGTAAGGGATGAGGGGCGAATGGTGACACCCA
TTGGGGTTGCCCCCGATGGGCGTTTACGGGTGGTGGATCCTGACACGGGG
AGGGAGGAAATCCTGACGACTGAATATCTTTTGTGA
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