mRNA_H-elongata_contig117440.1364.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117440.1364.1
Unique NamemRNA_H-elongata_contig117440.1364.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117440.1364.1 vs. uniprot
Match: D7FWZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ9_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.880e-19
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 ALRKSTAAMLRSGARPVAVSPTPQGLELVWETLTEDLTAVKAGKLLITVSEQPPGLR 171
            ALRKSTA MLRSGARPVAV+PT  GLELVWETLT+DL AV+AGKL + V+E+P G+R
Sbjct:  136 ALRKSTAGMLRSGARPVAVAPTESGLELVWETLTDDLKAVQAGKLSLVVTEEPAGIR 192
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BLAST of mRNA_H-elongata_contig117440.1364.1 vs. uniprot
Match: A0A6H5JFR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.420e-18
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 ALRKSTAAMLRSGARPVAVSPTPQGLELVWETLTEDLTAVKAGKLLITVSEQPPGLR 171
            ALRKSTA MLRSGARPVAV+PT  GLELVWETLT+DL AV+AGKL + V+E+P G+R
Sbjct:  334 ALRKSTAGMLRSGARPVAVAPTETGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIR 390
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117440.1364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWZ9_ECTSI2.880e-1975.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFR6_9PHAE2.420e-1875.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117440contigH-elongata_contig117440:1697..1870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D7FWZ9
EggNOG OGs2BY4X@1,2SKQ1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_003740.1
Exons1
Model size174
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929684.4890957-CDS-H-elongata_contig117440:1696..18461622929684.4890957-CDS-H-elongata_contig117440:1696..1846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117440 1697..1846 -
1691679118.470714-CDS-H-elongata_contig117440:1696..18461691679118.470714-CDS-H-elongata_contig117440:1696..1846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117440 1697..1846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929684.5054002-UTR-H-elongata_contig117440:1846..18701622929684.5054002-UTR-H-elongata_contig117440:1846..1870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117440 1847..1870 -
1691679118.482667-UTR-H-elongata_contig117440:1846..18701691679118.482667-UTR-H-elongata_contig117440:1846..1870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117440 1847..1870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117440.1364.1prot_H-elongata_contig117440.1364.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117440 1697..1846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117440.1364.1

>prot_H-elongata_contig117440.1364.1 ID=prot_H-elongata_contig117440.1364.1|Name=mRNA_H-elongata_contig117440.1364.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MLRSGARPVAVSPTPQGLELVWETLTEDLTAVKAGKLLITVSEQPPGLR*
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mRNA from alignment at H-elongata_contig117440:1697..1870-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117440.1364.1 ID=mRNA_H-elongata_contig117440.1364.1|Name=mRNA_H-elongata_contig117440.1364.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig117440:1697..1870- (Himanthalia elongata Himel1 dioecious)
GCCCTCCGCAAGTCGACGGCGGCGATGCTCAGGAGCGGCGCCCGGCCGGT
GGCGGTGTCCCCGACACCCCAGGGCCTGGAGCTGGTGTGGGAAACCCTTA
CGGAGGACCTCACAGCGGTGAAGGCGGGAAAGCTATTGATCACGGTCAGC
GAGCAGCCGCCGGGGCTAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig117440:1697..1870-

>mRNA_H-elongata_contig117440.1364.1 ID=mRNA_H-elongata_contig117440.1364.1|Name=mRNA_H-elongata_contig117440.1364.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig117440:1697..1870- (Himanthalia elongata Himel1 dioecious)
ATGCTCAGGAGCGGCGCCCGGCCGGTGGCGGTGTCCCCGACACCCCAGGG
CCTGGAGCTGGTGTGGGAAACCCTTACGGAGGACCTCACAGCGGTGAAGG
CGGGAAAGCTATTGATCACGGTCAGCGAGCAGCCGCCGGGGCTAAGGTGA
ATGCTCAGGAGCGGCGCCCGGCCGGTGGCGGTGTCCCCGACACCCCAGGG
CCTGGAGCTGGTGTGGGAAACCCTTACGGAGGACCTCACAGCGGTGAAGG
CGGGAAAGCTATTGATCACGGTCAGCGAGCAGCCGCCGGGGCTAAGGTGA
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