mRNA_H-elongata_contig1173.1357.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1173.1357.1
Unique NamemRNA_H-elongata_contig1173.1357.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Match: A8CEN9_SACJA (Myosin-like protein n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEN9_SACJA)

HSP 1 Score: 138 bits (347), Expect = 6.980e-35
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 3 
Query:  213 MEVGAKVWVAGGQELWRKGVVRTRVSEGGSSKNARIKVLLEEGGTSEFVVSVDDHDELSDLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY 512
            ME G KVW AGG ELWRKG V  RV E G  K ARI V+L+EGGT+EFVVS D+ DE +D+KLRNV GQAST EG+  EDLTSLTHLHEPTILYSLNQRY
Sbjct:    1 MEEGVKVWAAGGPELWRKGSVSKRVPEAGK-KTARITVVLDEGGTAEFVVS-DEQDECADVKLRNVAGQASTLEGLGAEDLTSLTHLHEPTILYSLNQRY 98
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BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Match: A0A6H5JTN5_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.790e-33
Identity = 68/101 (67.33%), Postives = 79/101 (78.22%), Query Frame = 3 
Query:  213 MEVGAKVWVAGGQELWRKGVVRTRVSEG-GSSKNARIKVLLEEGGTSEFVVSVDDHDELSDLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY 512
            ME G KVW  GG +LWRKGVV  RV +  G S  ARI V+LEEGGT+EF V+ D+ +E +D+KLRNV GQAST EG  VEDLTSLT+LHEPTILYSL+QRY
Sbjct:    1 MEEGVKVWAKGGPQLWRKGVVSKRVPDRTGGSGVARITVVLEEGGTAEFAVAADEEEECTDVKLRNVTGQASTLEGAGVEDLTSLTYLHEPTILYSLSQRY 101
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BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Match: D8LLV4_ECTSI (Myosin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV4_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.350e-32
Identity = 68/101 (67.33%), Postives = 79/101 (78.22%), Query Frame = 3 
Query:  213 MEVGAKVWVAGGQELWRKGVVRTRVSEG-GSSKNARIKVLLEEGGTSEFVVSVDDHDELSDLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY 512
            ME G KVW  GG +LWRKGVV  RV +  G S  ARI V+LEEGGT+EF V+ D+ +E +D+KLRNV GQAST EG  VEDLTSLT+LHEPTILYSL+QRY
Sbjct:    1 MEEGVKVWAKGGPQLWRKGVVSKRVPDRTGGSSIARITVVLEEGGTAEFAVAADEEEECTDVKLRNVTGQASTLEGAGVEDLTSLTYLHEPTILYSLSQRY 101
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BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Match: A0A836CJ42_9STRA (Myosin-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ42_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.520e-23
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 3 
Query:  213 MEVGAKVWVAGGQELWRKGVVRTRVSEGGSSKNARIKVLLEEGGTSEFVVSVDDHDELSDLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY 512
            ++VG KVW  GG  LW++G   T V +G ++K   + V L+ GGT EF ++  D +E+ DLKLRNV GQA+  EG  V+DLT+LTHLHEP IL SLN RY
Sbjct:    1 LQVGMKVWARGGPALWQEG---TLVQKGMNAKGFVLTVQLDAGGTKEFTMTGKDEEEIEDLKLRNVAGQATVIEGANVKDLTTLTHLHEPAILASLNMRY 97
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BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Match: A0A835ZAR7_9STRA (Myosin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.850e-21
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 3 
Query:  213 MEVGAKVWVAGGQELWRKGVVRTRVSEGGSSKNARIKVLLEEGGTSEFVVSVDDHDELSDLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY 512
            MEVG KVW  GG  LW++G V   V +  + K   + V L++GGT +FV +    +++ DLKLRNV GQA+  EG  V+DLT+LTHLHEP IL SLN RY
Sbjct:    1 MEVGMKVWARGGPALWQEGTV---VKKALAPKGFILTVQLDDGGTKDFVATGKGEEDVEDLKLRNVAGQATVIEGAGVKDLTTLTHLHEPAILASLNMRY 97
[Close]
BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Match: A0A6H5KAI8_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.520e-21
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 3 
Query:  213 MEVGAKVWVAGGQELWRKGVVRTRVSEGGSSKNARIKVLLEEGGTSEFVVSVDDHDELSDLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY 512
            ME GAKVW +GG+ LW  G V+ + + G S     I+V+L+ GG   + VS  D D+  +LKLRNV GQ+S  EG  V DLTSLT+LHEP IL+SL +RY
Sbjct:    1 MEEGAKVWASGGERLWESGTVKKKTAIGDSFD---IEVVLDVGGKQVYTVSGRDEDDSKNLKLRNVAGQSSVIEGHGVADLTSLTYLHEPAILFSLKERY 97
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BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Match: D7FGT5_ECTSI (Myosin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT5_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 4.770e-21
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 3 
Query:  213 MEVGAKVWVAGGQELWRKGVVRTRVSEGGSSKNARIKVLLEEGGTSEFVVSVDDHDELSDLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY 512
            ME GAKVW +GG+ LW  G V+ + + G S     I+V L+ GG   + VS  D D+  +LKLRNV GQ+S  EG  V DLTSLT+LHEP IL+SL +RY
Sbjct:    1 MEEGAKVWASGGERLWESGTVKKKTAIGDSFD---IEVALDVGGKQVYTVSGRDEDDSKNLKLRNVAGQSSVIEGHSVADLTSLTYLHEPAILFSLKERY 97
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BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Match: A0A836CM17_9STRA (Myosin-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM17_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.970e-12
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 3 
Query:  213 MEVGAKVWVAGGQELWRKGVVRTRVSEGGSSKNARIKV--LLEEGGTSEFVVSVDDHDELSDLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY 512
            ME  A VWV  G + W++G V +   + G ++   ++     EE          D+ +    +KLRNV GQAS  EG  V+DL  LTHLHEP IL++L +RY
Sbjct:    1 MECNAAVWVRDGSQTWQQGTVVSSKQDDGDTRLVTVRYDGNGEEASYRLTAAEADEGEGTKHIKLRNVKGQASVEEGAAVDDLIVLTHLHEPAILFTLEERY 102
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BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Match: A0A835YX87_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX87_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.470e-11
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 3 
Query:  213 MEVGAKVWVAGGQELWRKGVVRTRVSEGGSSKNARIKVLL--EEGGTSEFVVSVDDHDE---LSDLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY 512
            ME  A VW     + W++G V  R  +G    +AR+  +    +G  + + ++  + DE      +KLRNV GQA   EG  V+DL  LTHLHEP ILY+L +RY
Sbjct:    1 MEFNAHVWARDHLQQWKQGRVTAREEKG----DARLITVRFDSDGREAVYTLTASEADEGEGTKQIKLRNVKGQAGVLEGANVDDLIVLTHLHEPAILYTLEERY 101
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BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Match: A0A7S2WSN5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WSN5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.490e-5
Identity = 36/110 (32.73%), Postives = 53/110 (48.18%), Query Frame = 3 
Query:  222 GAKVWVAGGQELWRKGVVRTRVSEGGSSKNARIKVLLEEGGTSEFVVSVDDHDELS-------------DLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY 512
            G KVWV   +  W +G +  R  E G       K+ +E+G       + D+ +E++             DL L N      T    ++EDLT LTHLHEP+IL SL++R+
Sbjct:    6 GTKVWVRDKKRSWAQGTLEERYEEDGKYVFVVRKIPVEDGDEGSDYGADDEEEEVTKVFGESSEISNCKDLYLCNQFENGQTLS--DIEDLTWLTHLHEPSILQSLSERF 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1173.1357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A8CEN9_SACJA6.980e-3573.00Myosin-like protein n=1 Tax=Saccharina japonica Ta... [more]
A0A6H5JTN5_9PHAE3.790e-3367.33Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D8LLV4_ECTSI1.350e-3267.33Myosin-like protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A836CJ42_9STRA4.520e-2353.00Myosin-like protein (Fragment) n=1 Tax=Tribonema m... [more]
A0A835ZAR7_9STRA1.850e-2152.00Myosin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A6H5KAI8_9PHAE4.520e-2152.00Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D7FGT5_ECTSI4.770e-2152.00Myosin-like protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A836CM17_9STRA5.970e-1239.22Myosin-like protein (Fragment) n=1 Tax=Tribonema m... [more]
A0A835YX87_9STRA9.470e-1139.05P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2WSN5_9STRA1.490e-532.73Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1173contigH-elongata_contig1173:15020..15531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue6.4e-29
Seed eggNOG ortholog2880.D8LLV4
KEGG koko:K10357
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.9016664-UTR-H-elongata_contig1173:15019..152311622929683.9016664-UTR-H-elongata_contig1173:15019..15231Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1173 15020..15231 +
1691679118.2668695-UTR-H-elongata_contig1173:15019..152311691679118.2668695-UTR-H-elongata_contig1173:15019..15231Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1173 15020..15231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.9200144-CDS-H-elongata_contig1173:15231..155311622929683.9200144-CDS-H-elongata_contig1173:15231..15531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1173 15232..15531 +
1691679118.2770705-CDS-H-elongata_contig1173:15231..155311691679118.2770705-CDS-H-elongata_contig1173:15231..15531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1173 15232..15531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1173.1357.1prot_H-elongata_contig1173.1357.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1173 15232..15531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1173.1357.1

>prot_H-elongata_contig1173.1357.1 ID=prot_H-elongata_contig1173.1357.1|Name=mRNA_H-elongata_contig1173.1357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MEVGAKVWVAGGQELWRKGVVRTRVSEGGSSKNARIKVLLEEGGTSEFVV
SVDDHDELSDLKLRNVLGQASTFEGVEVEDLTSLTHLHEPTILYSLNQRY
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mRNA from alignment at H-elongata_contig1173:15020..15531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1173.1357.1 ID=mRNA_H-elongata_contig1173.1357.1|Name=mRNA_H-elongata_contig1173.1357.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=512bp|location=Sequence derived from alignment at H-elongata_contig1173:15020..15531+ (Himanthalia elongata Himel1 dioecious)
CAGCTGATAAGGTCAACGGTAATTTGAGAACTGCTGTCGGGGTCAAGAGA
TCCCTGCTGGAGACAAGGAACGCCTGTCCATTTACTCGCCCGAAAGAAAG
CTTTAATCACAGGGCGATAGCTAGACCACCCAAAAAAGTGCGCAGGACCT
TCCAAAGTGGCAACCCGTGACCGACTTTCACTTTCTGGAGCGTAGGGTTC
GTGTGAAGAAATATGGAGGTTGGAGCGAAGGTTTGGGTGGCCGGAGGGCA
AGAGCTCTGGAGAAAGGGCGTTGTCAGGACTCGGGTATCCGAAGGGGGGA
GCAGCAAAAACGCGCGCATCAAAGTTCTTCTGGAAGAAGGGGGAACATCC
GAGTTCGTTGTCTCCGTTGATGATCACGACGAGCTTTCCGACTTAAAGCT
CAGGAACGTGTTGGGACAGGCTTCGACTTTCGAAGGCGTCGAGGTCGAGG
ACTTGACGTCCCTGACGCACCTCCATGAGCCCACGATCCTTTACTCGCTG
AACCAGCGCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig1173:15020..15531+

>mRNA_H-elongata_contig1173.1357.1 ID=mRNA_H-elongata_contig1173.1357.1|Name=mRNA_H-elongata_contig1173.1357.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig1173:15020..15531+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGTTGGAGCGAAGGTTTGGGTGGCCGGAGGGCAAGAGCTCTGGAG
AAAGGGCGTTGTCAGGACTCGGGTATCCGAAGGGGGGAGCAGCAAAAACG
CGCGCATCAAAGTTCTTCTGGAAGAAGGGGGAACATCCGAGTTCGTTGTC
TCCGTTGATGATCACGACGAGCTTTCCGACTTAAAGCTCAGGAACGTGTT
GGGACAGGCTTCGACTTTCGAAGGCGTCGAGGTCGAGGACTTGACGTCCC
TGACGCACCTCCATGAGCCCACGATCCTTTACTCGCTGAACCAGCGCTAC
ATGGAGGTTGGAGCGAAGGTTTGGGTGGCCGGAGGGCAAGAGCTCTGGAG
AAAGGGCGTTGTCAGGACTCGGGTATCCGAAGGGGGGAGCAGCAAAAACG
CGCGCATCAAAGTTCTTCTGGAAGAAGGGGGAACATCCGAGTTCGTTGTC
TCCGTTGATGATCACGACGAGCTTTCCGACTTAAAGCTCAGGAACGTGTT
GGGACAGGCTTCGACTTTCGAAGGCGTCGAGGTCGAGGACTTGACGTCCC
TGACGCACCTCCATGAGCCCACGATCCTTTACTCGCTGAACCAGCGCTAC
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