mRNA_H-elongata_contig116939.1321.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116939.1321.1
Unique NamemRNA_H-elongata_contig116939.1321.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Match: A0A6H5KIL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL8_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 4.240e-62
Identity = 112/131 (85.50%), Postives = 123/131 (93.89%), Query Frame = 1
Query:   13 AFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVNAGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVILCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPREN 405
            AFPVLSRILGENSL+NT+VGALVISAASVDEACVWCLLALVVSTVNAGSP+DAFYVFLLL FFV VMLT V+  +L+VVR +SGED G PSRGV+ILC+LLTLV+AWVTDFIGIDAIFGAFVAGIIVPRE+
Sbjct:   26 AFPVLSRILGENSLLNTTVGALVISAASVDEACVWCLLALVVSTVNAGSPLDAFYVFLLLAFFVAVMLTVVKKALLVVVRRVSGEDTGAPSRGVMILCLLLTLVAAWVTDFIGIDAIFGAFVAGIIVPREH 156          
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Match: D8LLK5_ECTSI (K+ homeostasis protein Kha1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK5_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 5.890e-54
Identity = 103/131 (78.63%), Postives = 110/131 (83.97%), Query Frame = 1
Query:   13 AFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVNAGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVILCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPREN 405
            AFPVLSRILGENSL+NT+VGALVISAASVDEACVWCLLALVVSTVNAGSP+DAFYVFLLL F                   +SGED GPPSRGVVILC+LLTLV+AWVTDFIGIDAIFGAFVAGIIVPRE+
Sbjct:  171 AFPVLSRILGENSLLNTTVGALVISAASVDEACVWCLLALVVSTVNAGSPLDAFYVFLLLAFXXXXXXXXXXXXXXXXXXRVSGEDTGPPSRGVVILCLLLTLVAAWVTDFIGIDAIFGAFVAGIIVPREH 301          
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Match: A0A137P7F3_CONC2 (Na_H_Exchanger domain-containing protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P7F3_CONC2)

HSP 1 Score: 126 bits (316), Expect = 5.410e-31
Identity = 67/131 (51.15%), Postives = 96/131 (73.28%), Query Frame = 1
Query:   13 AFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVNAGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVILCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPREN 405
            AFPVL+RIL E +L++T VG++ ISAA+VD+A  WC LALV+S +NAGS + A YVFL+     +V+  AVR V++ V+R + G  +G PS+G + +  ++  +SAW+TD IGI AIFGAF+AG+I+P E 
Sbjct:  169 AFPVLARILTELNLLHTEVGSITISAAAVDDATSWCFLALVISLINAGSGLTALYVFLMGCALALVLFIAVRPVLITVLRRM-GAFDGNPSQGAIFIAFMICFISAWITDVIGIHAIFGAFLAGVIMPHEG 298          
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Match: A0A226F1S4_FOLCA (Cation/H(+) antiporter 17 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226F1S4_FOLCA)

HSP 1 Score: 113 bits (282), Expect = 2.090e-26
Identity = 65/135 (48.15%), Postives = 95/135 (70.37%), Query Frame = 1
Query:    1 MLLQAFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVNAGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVILCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPREN 405
            M + AFPVL+RIL E  L+ T VG + ISAA+VD+A  WCLLALV+S +NAGS + A YVFL+ + + + ++  VR + + ++R  SG  +  PS+ ++ L +++  VSA++TD IGI AIFG F+AGII+P E 
Sbjct:  197 MAITAFPVLARILTELGLLKTKVGGITISAAAVDDATSWCLLALVISLINAGSGLIALYVFLMGLGYSLFLIFVVRPLFVRLLRR-SGAFDSTPSQVMMFLTLMIVFVSAFITDAIGIHAIFGGFLAGIIMPHEG 330          
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Match: A0A835Z3U5_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3U5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.290e-26
Identity = 65/136 (47.79%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    1 MLLQAFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVNAGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVILCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPRENR 408
            M L AFPVLSRIL E  L+ T+VG   I +A+ D+   W +LALV+S V+AG P  A YVFL +V FV+VMLTA R     +VR     D    S GVV    +  L++ W T  IG+DAIFGAFV G+ +P++ +
Sbjct:  164 MSLTAFPVLSRILTEGRLLGTTVGITTIGSAAFDDLVAWSMLALVLSIVHAGQPQQALYVFLTMVAFVIVMLTAGRKAAAYLVRRFGANDNV--SLGVVFCIFVTVLLNGWFTQIIGVDAIFGAFVTGLAMPKDGK 297          
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Match: A0A4P9Z5H6_9FUNG (Sodium/hydrogen exchanger family-domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z5H6_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 5.060e-25
Identity = 61/135 (45.19%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    1 MLLQAFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVNAGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVILCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPREN 405
            M + AFPVL+RIL E +L+ T VG++ ISAA+VD+A  WCLLALV++ VNAGS I A Y+FL+ + +V+ ++  +R + +  V       E  PS+ +V + +++  +SA+ TD +GI AIFG FV G+I+P E 
Sbjct:  163 MSITAFPVLARILSELNLLKTHVGSITISAAAVDDAVSWCLLALVIAIVNAGSGIHALYIFLVAIGYVLFLILVIRPIFVRFVIPRYYNPELGPSQLIVTVVVVMVFISAFFTDALGIHAIFGGFVIGVIMPHEG 297          
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Match: A0A226EVR9_FOLCA (K(+)/H(+) antiporter 1 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226EVR9_FOLCA)

HSP 1 Score: 107 bits (266), Expect = 1.510e-24
Identity = 65/131 (49.62%), Postives = 91/131 (69.47%), Query Frame = 1
Query:   13 AFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVNAGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVILCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPREN 405
            AFPVL+RIL E  L+ T VG++ ISAA+VD+A  WCLLALV+S +NAGS + A YVFL+ + +   +L  VR +   ++R  SG+  G  S  ++ L +++  VSA++TD IGI AIFG F+ GII+PRE 
Sbjct:  200 AFPVLARILTELELLKTKVGSITISAAAVDDATSWCLLALVISLINAGSGLIALYVFLMGLGYSFFLLFIVRPMFAWLLRR-SGD--GTQSHVMMFLALMIVFVSAFITDAIGIHAIFGGFLTGIIMPREG 327          
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Match: A0A4P9XQD7_9FUNG (Sodium/hydrogen exchanger family-domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XQD7_9FUNG)

HSP 1 Score: 106 bits (265), Expect = 3.370e-24
Identity = 62/135 (45.93%), Postives = 90/135 (66.67%), Query Frame = 1
Query:    1 MLLQAFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVNAGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVILCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPREN 405
            M + AFPVL+RIL E SL+ T VG++ ISAA+VD+A  WCLLALV++ +NAG+PI+  Y+ L+ + +V+ ++  VR + +    +     E  PS+ VV    L+  VSA+ TD +GI AIFG FV G+I+P E 
Sbjct:  164 MSITAFPVLARILSELSLLKTHVGSITISAAAVDDAVSWCLLALVIAIINAGAPINTVYILLVGIGYVLFLILVVRPLFVRYFLKRFYNPEIGPSQLVVTAVTLMVFVSAFFTDALGIHAIFGGFVIGVIMPHEG 298          
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Match: A0A4P9Y1H5_9FUNG (Cation/H+ exchanger (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y1H5_9FUNG)

HSP 1 Score: 105 bits (262), Expect = 3.970e-24
Identity = 59/130 (45.38%), Postives = 88/130 (67.69%), Query Frame = 1
Query:   13 AFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVNAGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVILCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPRE 402
            AFPVL+RIL E +L+ T VG++ ISAA+V++A  W LLALV+S VNA S I+A Y+FL+ + FV+ ++  VR  V  ++R      E  P++  V++  L+ L+SA+ TD +GI  IFG F  G+I+P +
Sbjct:  167 AFPVLARILAELNLLKTPVGSMTISAAAVNDAVAWILLALVISIVNASSGINALYIFLVAIGFVLFLVFVVRRGVFWLIRRQPDIAENGPNQLTVMIIFLMVLISAFFTDVLGIHPIFGGFAVGVIMPHD 296          
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Match: A0A0L6WV92_9AGAR (K(+)/H(+) antiporter 1 (Fragment) n=1 Tax=Termitomyces sp. J132 TaxID=1306850 RepID=A0A0L6WV92_9AGAR)

HSP 1 Score: 106 bits (264), Expect = 5.540e-24
Identity = 59/132 (44.70%), Postives = 84/132 (63.64%), Query Frame = 1
Query:   13 AFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVNAGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVILCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPRENR 408
            AFPVL RIL E  L+ T+VG++ ++A   ++   W LLAL V+ VNA S + A YV L  + +V+ +   VRWV   + R     ++G P+ G++ L ++L L SA+ TD IGI  IFG FVAG+I+P ENR
Sbjct:  160 AFPVLCRILTELKLLETTVGSVTLAAGVGNDVVGWILLALTVALVNADSGLTALYVLLAAIGYVIFLRYPVRWVYHWLARRTGSLEQGTPTTGMMTLTLILVLASAFFTDIIGIHPIFGGFVAGLIIPHENR 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116939.1321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIL8_9PHAE4.240e-6285.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLK5_ECTSI5.890e-5478.63K+ homeostasis protein Kha1 n=1 Tax=Ectocarpus sil... [more]
A0A137P7F3_CONC25.410e-3151.15Na_H_Exchanger domain-containing protein n=1 Tax=C... [more]
A0A226F1S4_FOLCA2.090e-2648.15Cation/H(+) antiporter 17 n=1 Tax=Folsomia candida... [more]
A0A835Z3U5_9STRA7.290e-2647.79Sodium/hydrogen exchanger family-domain-containing... [more]
A0A4P9Z5H6_9FUNG5.060e-2545.19Sodium/hydrogen exchanger family-domain-containing... [more]
A0A226EVR9_FOLCA1.510e-2449.62K(+)/H(+) antiporter 1 n=1 Tax=Folsomia candida Ta... [more]
A0A4P9XQD7_9FUNG3.370e-2445.93Sodium/hydrogen exchanger family-domain-containing... [more]
A0A4P9Y1H5_9FUNG3.970e-2445.38Cation/H+ exchanger (Fragment) n=1 Tax=Piptocephal... [more]
A0A0L6WV92_9AGAR5.540e-2444.70K(+)/H(+) antiporter 1 (Fragment) n=1 Tax=Termitom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116939contigH-elongata_contig116939:724..1764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue1.2e-46
Seed eggNOG ortholog2880.D8LLK5
EggNOG free text desc.solute:proton antiporter activity
EggNOG OGsCOG0475@1,KOG1650@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size411
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.9205382-CDS-H-elongata_contig116939:723..9431622929679.9205382-CDS-H-elongata_contig116939:723..943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116939 724..943 +
1691679116.9139938-CDS-H-elongata_contig116939:723..9431691679116.9139938-CDS-H-elongata_contig116939:723..943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116939 724..943 +
1622929679.9357622-CDS-H-elongata_contig116939:1573..17641622929679.9357622-CDS-H-elongata_contig116939:1573..1764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116939 1574..1764 +
1691679116.9294364-CDS-H-elongata_contig116939:1573..17641691679116.9294364-CDS-H-elongata_contig116939:1573..1764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116939 1574..1764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116939.1321.1prot_H-elongata_contig116939.1321.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116939 724..1764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116939.1321.1

>prot_H-elongata_contig116939.1321.1 ID=prot_H-elongata_contig116939.1321.1|Name=mRNA_H-elongata_contig116939.1321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MLLQAFPVLSRILGENSLMNTSVGALVISAASVDEACVWCLLALVVSTVN
AGSPIDAFYVFLLLVFFVVVMLTAVRWVVLLVVREISGEDEGPPSRGVVI
LCMLLTLVSAWVTDFIGIDAIFGAFVAGIIVPRENR*
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mRNA from alignment at H-elongata_contig116939:724..1764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116939.1321.1 ID=mRNA_H-elongata_contig116939.1321.1|Name=mRNA_H-elongata_contig116939.1321.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1041bp|location=Sequence derived from alignment at H-elongata_contig116939:724..1764+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTTACAGGCGTTCCCCGTGCTATCGCGAATCCTGGGAGAGAACTC CCTGATGAACACGAGTGTCGGGGCCCTAGTTATTTCGGCGGCTTCGGTGG ACGAGGCCTGTGTGTGGTGCCTACTGGCCCTGGTGGTGTCGACGGTGAAC GCCGGCAGCCCTATCGACGCGTTTTACGTGTTCCTGCTGTTGGTGTTCTT CGTGGTGGTCATGCTGACGGGTGAGTATAGTAATATTGAGTAATAATGGT GATGACGAGTGAGAGTAATAATGGTGATGGCGAGTGACGTTTGTATTAGT GAATAGTAATGGTGATGACGAGTGAGAGTAATAATTATGGCGATGACAGG TAATATTTGTATTAGTGGGGCAATAATGATGGTAACGATGATGTATGATG ACGGGTGAGGGAAAGTTATTATGATAGGTGATGACGAGTGAGGGTAGAAA TCGTGATGACGACTGGTTGTATTGGTAGTGATGGGTCTGTCGGGTGATGG CAGATTAGCCACACCAGTGATCCCGGCTATGGTTTCACAGTTATGATGGC GTGTACGGTCTGTGGTATGAAGCGCGATGATTGTGACGAAGAAGGTTGTG CAATTTTCTGAGATGATGAATTGCAATCATTCTCATCAGACTAAGCACGA GTGACTATCCGACTAGCATTAGGACGGGCAACGGGAGAGTGTATGGGTAA ACGACTATTAATATATCGTTTACGCCTGCCCCAATAACCATCTCACACAA GTCTTCTCCCTCTCTTGCCCTCTCCCCCCCACCGTCTCCTCCCTCCCCTC GCTTCCTGCAACACCGTCCCCTTTTCTGGCGTGTCTGTTTGTGGGACCAG CGGTGAGATGGGTGGTTCTGCTCGTGGTCCGCGAAATCTCTGGTGAAGAC GAAGGCCCGCCGTCCCGGGGCGTGGTGATCCTTTGCATGCTGCTGACCCT AGTGTCTGCCTGGGTGACGGACTTCATCGGGATCGATGCGATCTTCGGTG CCTTCGTCGCGGGCATTATCGTGCCAAGGGAGAACAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig116939:724..1764+

>mRNA_H-elongata_contig116939.1321.1 ID=mRNA_H-elongata_contig116939.1321.1|Name=mRNA_H-elongata_contig116939.1321.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig116939:724..1764+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTTACAGGCGTTCCCCGTGCTATCGCGAATCCTGGGAGAGAACTC
CCTGATGAACACGAGTGTCGGGGCCCTAGTTATTTCGGCGGCTTCGGTGG
ACGAGGCCTGTGTGTGGTGCCTACTGGCCCTGGTGGTGTCGACGGTGAAC
GCCGGCAGCCCTATCGACGCGTTTTACGTGTTCCTGCTGTTGGTGTTCTT
CGTGGTGGTCATGCTGACGGATGTTGTTACAGGCGTTCCCCGTGCTATCG
CGAATCCTGGGAGAGAACTCCCTGATGAACACGAGTGTCGGGGCCCTAGT
TATTTCGGCGGCTTCGGTGGACGAGGCCTGTGTGTGGTGCCTACTGGCCC
TGGTGGTGTCGACGGTGAACGCCGGCAGCCCTATCGACGCGTTTTACGTG
TTCCTGCTGTTGGTGTTCTTCGTGGTGGTCATGCTGACGGCGGTGAGATG
GGTGGTTCTGCTCGTGGTCCGCGAAATCTCTGGTGAAGACGAAGGCCCGC
CGTCCCGGGGCGTGGTGATCCTTTGCATGCTGCTGACCCTAGTGTCTGCC
TGGGTGACGGACTTCATCGGGATCGATGCGATCTTCGGTGCCTTCGTCGC
GGGCATTATCGTGCCAAGGGAGAACAGGTAACGGTGAGATGGGTGGTTCT
GCTCGTGGTCCGCGAAATCTCTGGTGAAGACGAAGGCCCGCCGTCCCGGG
GCGTGGTGATCCTTTGCATGCTGCTGACCCTAGTGTCTGCCTGGGTGACG
GACTTCATCGGGATCGATGCGATCTTCGGTGCCTTCGTCGCGGGCATTAT
CGTGCCAAGGGAGAACAGGTAA
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