mRNA_H-elongata_contig115638.1236.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 5.750e-29 Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1
Query: 88 HVPPGKRPFIRHLTLQLDNCVSENKNHIVIGYLGSLVAPGFIGTVSVQFMPVGQTHMKLDQAFSR 282
+VP GKRP+I T+Q+DNCVSENKNHIVIGYLGSLVA G IG V VQFMPVG TH+K+DQ FSR
Sbjct: 2 YVPVGKRPYIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFSR 66
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 3.780e-23 Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 25 ITGCHLVCTALHKGLQRLFEEHVPPGKRPFIRHLTLQLDNCVSENKNHIVIGYLGSLVAPGFIGTVSVQFMPVGQTHMKLDQAFSR 282
+ G +LVCTAL L+RL PG+R +I+ L LQLDNCV ENKN+IV+ ++G LVA G IG+ V F+ VG TH+K+DQ FSR
Sbjct: 8 LPGSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 93
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 5.180e-22 Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 25 ITGCHLVCTALHKGLQRLFEEHVPPGKRPFIRHLTLQLDNCVSENKNHIVIGYLGSLVAPGFIGTVSVQFMPVGQTHMKLDQAFSR 282
+ G +LVCTAL L+RL PG+R +I+ L LQLDNCV ENKN+IV+ ++G LVA G IG+ V F+ VG TH+K+DQ FSR
Sbjct: 8 LPGSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 93
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 9.670e-22 Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1
Query: 31 GCHLVCTALHKGLQRLFEEHVPPGKRPFIRHLTLQLDNCVSENKNHIVIGYLGSLVAPGFIGTVSVQFMPVGQTHMKLDQAFSR 282
G +LVCTAL L+RL PG+R +I+ L LQLDNCV ENKN+IV+ ++G LVA G IG+ V F+ VG TH+K+DQ FSR
Sbjct: 122 GSNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 205
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 8.930e-21 Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 31 GCHLVCTALHKGLQRLFEEHVPPGKRPFIRHLTLQLDNCVSENKNHIVIGYLGSLVAPGFIGTVSVQFMPVGQTHMKLDQAFSR 282
G +LVCTAL L+RL E PG+R I+ L LQLDNCV ENKN+IV+ ++G LVA G IG+ V F+ VG TH K DQ FSR
Sbjct: 237 GSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSR 320
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 2.760e-18 Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 25 ITGCHLVCTALHKGLQRLFEEHVPPGKRPFIRHLTLQLDNCVSENKNHIVIGYLGSLVAPGFIGTVSVQFMPVGQTHMKLDQAFSR 282
+ G +L CT L L+RL PG+R I+ LQLDNCV ENKN+IV+ ++G LVA G IG V F+ +G TH+K+DQ FSR
Sbjct: 8 LPGSNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSR 93
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 6.630e-11 Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 139 DNCVSENKNHIVIGYLGSLVAPGFIGTVSVQFMPVGQTHMKLDQAFSR 282
DNCV ENKN+IV+ ++G LVA G IG+ V F+ VG TH+K+DQ FSR
Sbjct: 213 DNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 260
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Match: A0A8B6D6P8_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6D6P8_MYTGA) HSP 1 Score: 57.0 bits (136), Expect = 2.140e-7 Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 1
Query: 124 LTLQLDNCVSENKNHIVIGYLGSLVAPGFIGTVSVQFMPVGQTHMKLDQAFSR 282
L LQ+DNCV ENKN V G+L LV + V F+ VG TH +DQ FSR
Sbjct: 125 LYLQMDNCVRENKNRFVFGFLSLLVELKVFKKIKVSFLMVGHTHEDIDQVFSR 177
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Match: UPI0009E411EA (uncharacterized protein LOC110055995 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E411EA) HSP 1 Score: 55.8 bits (133), Expect = 5.800e-7 Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 1
Query: 124 LTLQLDNCVSENKNHIVIGYLGSLVAPGFIGTVSVQFMPVGQTHMKLDQAFSR 282
+ +QLDN ENKN V +LG LV + + F+PVG TH+ +DQ FSR
Sbjct: 499 IAIQLDNTAKENKNQYVFCFLGYLVETDVFSRIEISFLPVGHTHIDVDQMFSR 551
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Match: UPI00077B10B1 (uncharacterized protein LOC107327737 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B10B1) HSP 1 Score: 50.8 bits (120), Expect = 3.210e-5 Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 1
Query: 130 LQLDNCVSENKNHIVIGYLGSLVAPGFIGTVSVQFMPVGQTHMKLDQAFSR 282
+QLDN ENKN V ++ LV + + F+PVG TH+ +DQ FSR
Sbjct: 96 MQLDNTAKENKNQYVFCFMAYLVETKVFERIEISFLPVGHTHIDVDQMFSR 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115638.1236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115638.1236.1 >prot_H-elongata_contig115638.1236.1 ID=prot_H-elongata_contig115638.1236.1|Name=mRNA_H-elongata_contig115638.1236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp STSLSVRIITGCHLVCTALHKGLQRLFEEHVPPGKRPFIRHLTLQLDNCVback to top mRNA from alignment at H-elongata_contig115638:1710..1994+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115638.1236.1 ID=mRNA_H-elongata_contig115638.1236.1|Name=mRNA_H-elongata_contig115638.1236.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig115638:1710..1994+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115638:1710..1994+ >mRNA_H-elongata_contig115638.1236.1 ID=mRNA_H-elongata_contig115638.1236.1|Name=mRNA_H-elongata_contig115638.1236.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig115638:1710..1994+ (Himanthalia elongata Himel1 dioecious)back to top |