mRNA_H-elongata_contig114927.1194.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114927.1194.1
Unique NamemRNA_H-elongata_contig114927.1194.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114927.1194.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.530e-28
Identity = 69/151 (45.70%), Postives = 84/151 (55.63%), Query Frame = 1 
Query:    1 HPPLETKLDGDSPNWKEGERYKVVLGKTFY------------------------REAGGGSSNSGKGDGSGHYVHLKYDFVPGRTSLDAPATLRQGPLTGADGKTDGDGL-------------RWAAEMVYESRDPENPRPVRFSGDAARL 342
            +PPL+T  +   P W+EGERY VVLG +FY                        R    G  ++G+ +  G YVHLKYDFVPGRT+LD PATLRQ PLT  +G+  G G              RWAAE+ YESRDP NP PVRF+GDA R+
Sbjct:  614 YPPLQTAPE-KMPAWREGERYGVVLGDSFYGSGXXXXXXXXXXXXXXXXXXXXXRRGLVGDDDTGESN-PGQYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWKGRGSGTGGDVVGGGQQQRWAAEVEYESRDPSNPEPVRFTGDAVRI 762
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BLAST of mRNA_H-elongata_contig114927.1194.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 8.890e-27
Identity = 68/154 (44.16%), Postives = 80/154 (51.95%), Query Frame = 1 
Query:    1 HPPLETKLDGDSPNWKEGERYKVVLGKTFYREAGG----------------------------GSSNSGKGDGSGHYVHLKYDFVPGRTSLDAPATLRQGPLTGADGKTDGDGL-------------RWAAEMVYESRDPENPRPVRFSGDAAR 339
            +PPL+T  +   P W+EGERY VVLG++FY                                 G +N G+      YVHLKYDFVPGRT+LD PATLRQ PLT  +G+  G                RWAAEM YESRDP NP PVRF+GDA R
Sbjct:  853 YPPLQTAPE-KKPAWREGERYGVVLGESFYGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGENNPGQ------YVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWRGXXXXXXGDVGGGGQQQRWAAEMEYESRDPSNPEPVRFTGDAVR 999
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114927.1194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRR3_ECTSI1.530e-2845.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP83_9PHAE8.890e-2744.16EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114927contigH-elongata_contig114927:1045..1386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003540.1
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.582443-CDS-H-elongata_contig114927:1044..13861622929665.582443-CDS-H-elongata_contig114927:1044..1386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114927 1045..1386 -
1691679111.307313-CDS-H-elongata_contig114927:1044..13861691679111.307313-CDS-H-elongata_contig114927:1044..1386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114927 1045..1386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114927.1194.1prot_H-elongata_contig114927.1194.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114927 1045..1386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114927.1194.1

>prot_H-elongata_contig114927.1194.1 ID=prot_H-elongata_contig114927.1194.1|Name=mRNA_H-elongata_contig114927.1194.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
HPPLETKLDGDSPNWKEGERYKVVLGKTFYREAGGGSSNSGKGDGSGHYV
HLKYDFVPGRTSLDAPATLRQGPLTGADGKTDGDGLRWAAEMVYESRDPE
NPRPVRFSGDAARL
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mRNA from alignment at H-elongata_contig114927:1045..1386-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114927.1194.1 ID=mRNA_H-elongata_contig114927.1194.1|Name=mRNA_H-elongata_contig114927.1194.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig114927:1045..1386- (Himanthalia elongata Himel1 dioecious)
CATCCGCCGCTGGAAACAAAGCTCGACGGCGACAGCCCCAACTGGAAAGA
GGGAGAACGGTACAAGGTGGTCCTGGGGAAAACGTTTTACCGCGAGGCGG
GCGGCGGTAGTAGCAACAGTGGAAAGGGTGATGGTTCGGGACATTATGTC
CATTTGAAGTACGATTTCGTGCCCGGTCGAACGAGCCTCGACGCCCCGGC
GACGCTGAGGCAGGGACCACTCACCGGAGCGGACGGGAAGACAGACGGCG
ACGGGCTGCGCTGGGCTGCGGAGATGGTATACGAGAGCAGGGATCCCGAA
AACCCTCGACCTGTTCGATTCAGTGGGGACGCTGCAAGGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig114927:1045..1386-

>mRNA_H-elongata_contig114927.1194.1 ID=mRNA_H-elongata_contig114927.1194.1|Name=mRNA_H-elongata_contig114927.1194.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig114927:1045..1386- (Himanthalia elongata Himel1 dioecious)
CATCCGCCGCTGGAAACAAAGCTCGACGGCGACAGCCCCAACTGGAAAGA
GGGAGAACGGTACAAGGTGGTCCTGGGGAAAACGTTTTACCGCGAGGCGG
GCGGCGGTAGTAGCAACAGTGGAAAGGGTGATGGTTCGGGACATTATGTC
CATTTGAAGTACGATTTCGTGCCCGGTCGAACGAGCCTCGACGCCCCGGC
GACGCTGAGGCAGGGACCACTCACCGGAGCGGACGGGAAGACAGACGGCG
ACGGGCTGCGCTGGGCTGCGGAGATGGTATACGAGAGCAGGGATCCCGAA
AACCCTCGACCTGTTCGATTCAGTGGGGACGCTGCAAGGTTACATCCGCC
GCTGGAAACAAAGCTCGACGGCGACAGCCCCAACTGGAAAGAGGGAGAAC
GGTACAAGGTGGTCCTGGGGAAAACGTTTTACCGCGAGGCGGGCGGCGGT
AGTAGCAACAGTGGAAAGGGTGATGGTTCGGGACATTATGTCCATTTGAA
GTACGATTTCGTGCCCGGTCGAACGAGCCTCGACGCCCCGGCGACGCTGA
GGCAGGGACCACTCACCGGAGCGGACGGGAAGACAGACGGCGACGGGCTG
CGCTGGGCTGCGGAGATGGTATACGAGAGCAGGGATCCCGAAAACCCTCG
ACCTGTTCGATTCAGTGGGGACGCTGCAAGGTTA
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