mRNA_H-elongata_contig113540.1087.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113540.1087.1
Unique NamemRNA_H-elongata_contig113540.1087.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113540.1087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113540contigH-elongata_contig113540:831..1327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size481
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113540.1087.1prot_H-elongata_contig113540.1087.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113540 864..1327 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.832926-UTR-H-elongata_contig113540:830..8631622929654.832926-UTR-H-elongata_contig113540:830..863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113540 831..863 +
1691679107.505312-UTR-H-elongata_contig113540:830..8631691679107.505312-UTR-H-elongata_contig113540:830..863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113540 831..863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.8513763-CDS-H-elongata_contig113540:863..9981622929654.8513763-CDS-H-elongata_contig113540:863..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113540 864..998 +
1691679107.5135827-CDS-H-elongata_contig113540:863..9981691679107.5135827-CDS-H-elongata_contig113540:863..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113540 864..998 +
1622929654.8667092-CDS-H-elongata_contig113540:1015..13271622929654.8667092-CDS-H-elongata_contig113540:1015..1327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113540 1016..1327 +
1691679107.520754-CDS-H-elongata_contig113540:1015..13271691679107.520754-CDS-H-elongata_contig113540:1015..1327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113540 1016..1327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113540.1087.1

>prot_H-elongata_contig113540.1087.1 ID=prot_H-elongata_contig113540.1087.1|Name=mRNA_H-elongata_contig113540.1087.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MVKAEAIEALLYRYSTWILRQNYYAKLRTLYLRVLLRITGTQHKRLVQPC
PRNNQVREHLDNVAHEKTFVGGNAHPNERRSAAKENRLYGEGGVGRKKSE
PIVYRVISRRGWKATAFKAEVWGETVAEGRRMFMAAWRKESLHERKADR
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mRNA from alignment at H-elongata_contig113540:831..1327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113540.1087.1 ID=mRNA_H-elongata_contig113540.1087.1|Name=mRNA_H-elongata_contig113540.1087.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at H-elongata_contig113540:831..1327+ (Himanthalia elongata Himel1 dioecious)
CGAACGTAGCGCTCTCTCTCTCGTAAGGCCCGAATGGTAAAGGCTGAGGC
AATCGAGGCCCTTCTGTATCGATACAGTACGTGGATCCTCCGCCAAAACT
ACTATGCCAAACTCCGCACCCTATACCTCCGGGTCTTGCTTCGCATCACC
GGGACACAGCACAAGAGATCAGATCATCGGATTACCTTGTACAACCGTGC
CCTCGAAATAACCAGGTGCGAGAACATTTAGACAACGTTGCGCACGAGAA
GACTTTTGTGGGCGGAAACGCTCACCCGAATGAGCGGCGGTCGGCTGCCA
AAGAGAATCGCCTGTACGGAGAGGGCGGTGTGGGAAGGAAAAAGAGTGAA
CCGATTGTGTACAGAGTGATATCCAGGCGGGGCTGGAAAGCAACTGCATT
TAAGGCTGAGGTTTGGGGTGAGACGGTCGCGGAGGGTAGGCGGATGTTCA
TGGCCGCGTGGAGAAAAGAATCTTTGCATGAACGCAAGGCGGACCGA
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Coding sequence (CDS) from alignment at H-elongata_contig113540:831..1327+

>mRNA_H-elongata_contig113540.1087.1 ID=mRNA_H-elongata_contig113540.1087.1|Name=mRNA_H-elongata_contig113540.1087.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig113540:831..1327+ (Himanthalia elongata Himel1 dioecious)
ATGGTAAAGGCTGAGGCAATCGAGGCCCTTCTGTATCGATACAGTACGTG
GATCCTCCGCCAAAACTACTATGCCAAACTCCGCACCCTATACCTCCGGG
TCTTGCTTCGCATCACCGGGACACAGCACAAGAGAATGGTAAAGGCTGAG
GCAATCGAGGCCCTTCTGTATCGATACAGTACGTGGATCCTCCGCCAAAA
CTACTATGCCAAACTCCGCACCCTATACCTCCGGGTCTTGCTTCGCATCA
CCGGGACACAGCACAAGAGACTTGTACAACCGTGCCCTCGAAATAACCAG
GTGCGAGAACATTTAGACAACGTTGCGCACGAGAAGACTTTTGTGGGCGG
AAACGCTCACCCGAATGAGCGGCGGTCGGCTGCCAAAGAGAATCGCCTGT
ACGGAGAGGGCGGTGTGGGAAGGAAAAAGAGTGAACCGATTGTGTACAGA
GTGATATCCAGGCGGGGCTGGAAAGCAACTGCATTTAAGGCTGAGGTTTG
GGGTGAGACGGTCGCGGAGGGTAGGCGGATGTTCATGGCCGCGTGGAGAA
AAGAATCTTTGCATGAACGCAAGGCGGACCGACTTGTACAACCGTGCCCT
CGAAATAACCAGGTGCGAGAACATTTAGACAACGTTGCGCACGAGAAGAC
TTTTGTGGGCGGAAACGCTCACCCGAATGAGCGGCGGTCGGCTGCCAAAG
AGAATCGCCTGTACGGAGAGGGCGGTGTGGGAAGGAAAAAGAGTGAACCG
ATTGTGTACAGAGTGATATCCAGGCGGGGCTGGAAAGCAACTGCATTTAA
GGCTGAGGTTTGGGGTGAGACGGTCGCGGAGGGTAGGCGGATGTTCATGG
CCGCGTGGAGAAAAGAATCTTTGCATGAACGCAAGGCGGACCGA
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