mRNA_H-elongata_contig11352.1086.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: D7FPU7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU7_ECTSI) HSP 1 Score: 428 bits (1101), Expect = 4.430e-146 Identity = 213/272 (78.31%), Postives = 236/272 (86.76%), Query Frame = 1
Query: 1 MKSAVMAFACASCASAFMAPPLVTNARVSTPKTATMMSEGPGSWWFPSDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWAT 816
MKSAVMA AC S ASAF+AP LV++ S+ TMM+E PGSWW PSDG+KS ALPWA KPLIGDG +VGDAGFDPLNLANGPADLVWLRTAELKHGRICMLA VG+VAPELVQHPVG+ GF+F EFTQMNAFAALSSVPRLGLAQIVIL SL+EVASFT N +Y YEDDLT LE K K G+T+ LAGAAK+APV NK+Q+F+D VIPGDLGFDPLGLAANG+NPDYALAE+KH RLAM+GFLGMAVQQAVDPNGGVLEQF+NWA+
Sbjct: 1 MKSAVMAAACVSSASAFVAPSLVSSRVASSAPKTTMMAEVPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGINPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 272
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A835Z6C4_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C4_9STRA) HSP 1 Score: 261 bits (668), Expect = 1.940e-80 Identity = 134/238 (56.30%), Postives = 167/238 (70.17%), Query Frame = 1
Query: 124 GSWWFPSDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAP--------VETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWA 813
G+W+ D + ST+LPW KP+IGDG ++GD GFDPL+L+ D+ WLR AELKHGR+CMLA+VGLV PELVQHPVG++GF FPAEFTQMNA AAL +VP+ GLAQIV+ L+E+A+F SN+ + + YED L+ LER L G AK +E E+ D+ GDLGFDPLGLAANGV DYALAEIKH RLAM+G LGM + Q +P+ GVL+Q L+WA
Sbjct: 58 GAWYVREDPTLSTSLPWVTKPVIGDGDMIGDVGFDPLSLSK-TFDISWLRAAELKHGRVCMLAAVGLVTPELVQHPVGFDGFSFPAEFTQMNAIAALGAVPKFGLAQIVLACGLIEIATFGSNYNSAFNYEDGLSLLERAKLEGNERTFLTGVAKTTSNINKFGNALEVGFEKPGSDNA--GDLGFDPLGLAANGVRSDYALAEIKHARLAMIGVLGMLLGQFYEPSKGVLQQTLDWA 292
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: W7TZB5_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZB5_9STRA) HSP 1 Score: 244 bits (623), Expect = 1.130e-73 Identity = 127/238 (53.36%), Postives = 164/238 (68.91%), Query Frame = 1
Query: 124 GSWWFPSDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAK------VAPVETNKEQLFKDD--VIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWA 813
G W+ D + STALPW +P IGDG++VGD GFDP L+ D+ WLR AELKHGR+ MLA++G+V PELVQ P G+EGF+F EF+++NA ALS+VP LGLAQI++ IS VEVA+F+ + + +ED+LT LERK V GR L+GAAK V P + F+D +PGDLGFDP+G NG+NPDYALAEIKH RLAM+G GM +Q+ + P G +L Q + WA
Sbjct: 62 GKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGLSK-IFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSELNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERKKVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVGFTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKG-ILSQTVEWA 297
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A7R9U4N3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4N3_9STRA) HSP 1 Score: 234 bits (596), Expect = 9.190e-70 Identity = 123/231 (53.25%), Postives = 154/231 (66.67%), Query Frame = 1
Query: 118 GPGSWWFP-SDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQL----FKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLE 795
GP W P + S ALPW+ KP+IGDG + GD GFDP L+ L WLR AE+KHGR+CMLA+VGL+APELVQ+PVGYEG QF F +MNAF AL +VP LGLAQIV++ LVE+ S SN+ + ++D LTS+ER +G + L G AK A K + + V PGDLGFDPLG A +G+ P++A AEIKH RLAM+G LGM +QQA P G+LE
Sbjct: 53 GPDGQWLPKTKEGMSQALPWSDKPVIGDGNLAGDRGFDPWGLSK-IFPLAWLRAAEIKHGRVCMLAAVGLIAPELVQNPVGYEGLQFDPVFQEMNAFKALGTVPGLGLAQIVLVAGLVEIFSIKSNYEGTFTFDDGLTSIERSDIDSGAFKFLTGGAKNALAADTKSKFETLQVTEQVSPGDLGFDPLGFADDGIKPEFAEAEIKHARLAMLGTLGMLIQQAKTPEFGLLE 282
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A7S1XTT1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTT1_9STRA) HSP 1 Score: 231 bits (590), Expect = 1.630e-68 Identity = 123/228 (53.95%), Postives = 157/228 (68.86%), Query Frame = 1
Query: 133 WFPS--DGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFK-----DDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLE 795
W P DG S ALPW+ KP+IGDGT+ GD GFDP NL++ L WLR AELKHGR+CMLA+VGLVAPEL QHP+G+EG +F EFT+MNAF AL++ P LGLAQI++ LVE+ +F + + Y+D LT +E++ G + L G AK A V + F D+ GD+GFDPLG A NGVNPDYALAE+KH R+AM+G LGM +QQ+ P+ G+LE
Sbjct: 58 WLPKPVDGM-SAALPWSDKPVIGDGTLAGDQGFDPWNLSS-VFPLTWLRAAELKHGRVCMLAAVGLVAPELFQHPIGFEGLKFAPEFTEMNAFKALNTAPGLGLAQILLFCGLVEIFTFGKAYDGTFTYDDGLTKIEKEDIDAGAFKFLTGGAKNA-VAADTASKFDGLTTVDEGRAGDIGFDPLGFADNGVNPDYALAELKHGRVAMLGVLGMLIQQSKTPDFGLLE 282
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A0G4G8I9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8I9_VITBC) HSP 1 Score: 214 bits (546), Expect = 3.010e-62 Identity = 115/241 (47.72%), Postives = 157/241 (65.15%), Query Frame = 1
Query: 124 GSWWFPSDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYED-------DLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFK--DDV--IPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWA 813
G W+ D + S ALPW ++P IGDG +VGD GFDP L+ ++ WLR AELKHGR+CMLASVGL+APELVQ P G++G F F++++ + AL+++P G+AQI+I I+L+E+ + A+Y Y DLT ER TG T LAG A +E++ + D V +PGDLG+DPLGLA NG+ D+ALAEIKH RLAM+G LGM +Q ++PN +L+Q + WA
Sbjct: 62 GQWYVRDDPNISPALPWVSRPTIGDGNLVGDFGFDPFGLSK-LVNIQWLRNAELKHGRVCMLASVGLLAPELVQRPEGFKGIDFVPAFSELSPYKALTALPPAGIAQIIIAIALIELTT------AKYLYNPTTKIKLADLTLRERALVQTGNTRFLAGGAFAELGRLGEERIEERPDAVSRVPGDLGWDPLGLADNGIREDWALAEIKHARLAMIGTLGMMLQAFIEPNKPILQQTIEWA 295
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A0G4FH94_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FH94_VITBC) HSP 1 Score: 203 bits (517), Expect = 3.070e-58 Identity = 111/225 (49.33%), Postives = 149/225 (66.22%), Query Frame = 1
Query: 157 STALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKV---TGRTEALAGAAKVAPVETNKEQLFKDDV----IPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNW 810
S ALPW AKP IGDGT+VGD GFDPL L+ AD+ +LR AELKHGR+CMLA+VGL+APELVQ P G++G +F F++MN F AL ++P GL QI+I I+L+E+ T+ F+ + + +T + K ++ TG T LAG+A+ E + + +PGDLGFDPLGLA G+ D+ALAEIKH RLAM+ LGM +Q P+ G+LE +W
Sbjct: 53 SLALPWVAKPQIGDGTLVGDFGFDPLGLSK-IADVGFLRNAELKHGRLCMLAAVGLLAPELVQKPAGFDGLEFVPAFSEMNPFKALFAMPPAGLMQILIAIALIELN--TAKFLWDPSMKMRITDMSEKERLLVQTGNTRFLAGSARPQLASLGNEVVMEKSGMFSRVPGDLGFDPLGLADEGIREDWALAEIKHGRLAMLAVLGMLLQVGARPDKGILEMTGDW 274
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A0G4HNT2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNT2_9ALVE) HSP 1 Score: 158 bits (399), Expect = 7.280e-41 Identity = 91/230 (39.57%), Postives = 122/230 (53.04%), Query Frame = 1
Query: 124 GSWWFPSDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWA 813
G+W+ D S + PW K I DGT+ GD GFDPL L+ D W+RTAELKHGRI MLA VGL+ PEL+ P G++G F F + AL P LG+ QI ++++L+E + +Y + + Y G ++ + E K PG +GFDP G A NG+ D+A AEIKH RLAMVG GM +Q + P+ +LEQ WA
Sbjct: 84 GAWYIVQDPEISKSAPWVKKEQIYDGTLAGDYGFDPLRLSER-RDAWWMRTAELKHGRIAMLACVGLLTPELILKPEGFKGLNFVPAFDAVAPLEALRKAPPLGILQIALVLALIEFQTL--------KYVKNPMEYLQPYMDKG-------------IKFSDEYFEKR--TPGSIGFDPAGFADNGIRSDFAEAEIKHARLAMVGAAGMLIQSLIKPDMPILEQTSKWA 289
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A8J6CE65_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CE65_DIALT) HSP 1 Score: 137 bits (346), Expect = 6.680e-34 Identity = 92/225 (40.89%), Postives = 123/225 (54.67%), Query Frame = 1
Query: 157 STALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFA-------ALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNW 810
S ++P+A KP DGT++GD GFDPL L+N D+ WLR AE+KHGR+ MLA+ G LVQ EG++ P + FA ALS+ P LGLAQIV LI L+E+ + +S + + YED + +A AG+ PGDLG+DPLGL+A G+N DYA+AE+KH RLAM+G GM V + EQ +W
Sbjct: 48 SASIPFAPKPAKLDGTLLGDIGFDPLGLSN-LWDIKWLRAAEIKHGRVGMLAATGF----LVQ-----EGYRLPGPASNPELFATAKTPLEALSTAPPLGLAQIVALIFLIELVTSSSLLITDSFYED-----------SPNLKAPAGSGS-----------------PGDLGWDPLGLSAGGLNLDYAIAELKHGRLAMLGAAGMLAGSLVSGKS-ISEQTYDW 233
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A0G4GWW0_VITBC (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A0G4GWW0_VITBC) HSP 1 Score: 125 bits (313), Expect = 2.490e-29 Identity = 82/223 (36.77%), Postives = 112/223 (50.22%), Query Frame = 1
Query: 145 DGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWA 813
D KS ALP+A KP +G +VGD GFDP N DL +R ELKHGR+CMLA++G+ LVQ +++ F N A + P LG+ Q++++IS +E + NFV GR IPGD GFDPL L+ G+ ++ L E+KH RLAM+GFLGM VQQ + P+ ++E +NWA
Sbjct: 46 DIEKSVALPFARKPDNLNGELVGDVGFDPFGFTNNQ-DLARMREVELKHGRVCMLATLGV----LVQST-----YRWNEAFPSKNFLEAPLTAPTLGMIQLLLVISAIEY--YNGNFV-------------------GR-------------------------IPGDRGFDPLRLSREGIRENWQLMELKHGRLAMIGFLGMVVQQLLRPDESIVEMTINWA 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11352.1086.1 >prot_H-elongata_contig11352.1086.1 ID=prot_H-elongata_contig11352.1086.1|Name=mRNA_H-elongata_contig11352.1086.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=273bp MKSAVMAFACASCASAFMAPPLVTNARVSTPKTATMMSEGPGSWWFPSDGback to top mRNA from alignment at H-elongata_contig11352:2659..6786- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11352.1086.1 ID=mRNA_H-elongata_contig11352.1086.1|Name=mRNA_H-elongata_contig11352.1086.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4128bp|location=Sequence derived from alignment at H-elongata_contig11352:2659..6786- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11352:2659..6786- >mRNA_H-elongata_contig11352.1086.1 ID=mRNA_H-elongata_contig11352.1086.1|Name=mRNA_H-elongata_contig11352.1086.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1638bp|location=Sequence derived from alignment at H-elongata_contig11352:2659..6786- (Himanthalia elongata Himel1 dioecious)back to top |