mRNA_H-elongata_contig1133.1074.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1133.1074.1
Unique NamemRNA_H-elongata_contig1133.1074.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Match: A0A6H5KNM1_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.550e-19
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1
Query:   25 PNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLERYYTNHICTPARVS 189
            PNVIFIL+DDVG ND+GY STDL  +TPF+D L+ +GVRL +YYTN +CTP+RVS
Sbjct:  167 PNVIFILIDDVGTNDIGYQSTDLWELTPFMDSLSSEGVRLTKYYTNQLCTPSRVS 221          
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Match: A0A6H5KIK9_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIK9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.260e-19
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    7 EAETAPPNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLERYYTNHICTPARVS 189
            +  +  P+VIFIL+DDVG ND+GY STDL  +TPF+D LA  GV L+ YYTN +CTP+RVS
Sbjct:   51 DGASGQPHVIFILIDDVGTNDMGYRSTDLWELTPFLDSLASSGVVLDNYYTNQLCTPSRVS 111          
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Match: F0YCM0_AURAN (Sulfatase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCM0_AURAN)

HSP 1 Score: 80.9 bits (198), Expect = 2.750e-18
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 ESEAETAPPNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLERYYTNHICTPARVS 189
            ++ AE+ PPN++ I LDDVG+NDLG++STDL  VTP +D +A  G+RL  YY   +CTPAR +
Sbjct:    2 DASAESRPPNIVLITLDDVGLNDLGFMSTDLKGVTPRMDAMASQGIRLTNYYGQSLCTPARTA 64          
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Match: D7FLS1_ECTSI (Formylglycine-dependent sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS1_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 5.880e-18
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   25 PNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLERYYTNHICTPARVS 189
            PNVIFIL+DDVG ND+GY STDL  +TPF+D L+ +GVRL +YYTN +CTP+R S
Sbjct:  120 PNVIFILIDDVGTNDIGYQSTDLWELTPFMDSLSSEGVRLTKYYTNQLCTPSRAS 174          
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Match: F0Y541_AURAN (Putative arylsulfatase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y541_AURAN)

HSP 1 Score: 82.0 bits (201), Expect = 9.850e-17
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 1
Query:   13 ETAPPNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLERYYTNHICTPARVS 189
            ++A P+V+F+L+DD+G ND+GY S D+  VTPFIDGLA  GVRL+ YY+ H+CTPAR +
Sbjct:   88 DSAKPHVLFVLVDDMGSNDVGYQSHDMVGVTPFIDGLAEQGVRLKEYYSMHMCTPARAA 146          
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Match: D7G7Y4_ECTSI (Formylglycine-dependent sulfatase, C-terminal Formylglycine-dependent sulfatase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y4_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.330e-16
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   25 PNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLERYYTNHICTPARVS 189
            P+VIFIL+DDVG ND+GY STDL  +TPF+D LA  GV L+ YYTN +CTP+R S
Sbjct:   70 PHVIFILIDDVGTNDMGYRSTDLWELTPFLDSLASSGVVLDNYYTNQLCTPSRAS 124          
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Match: F0Y937_AURAN (Putative arylsulfatase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y937_AURAN)

HSP 1 Score: 80.9 bits (198), Expect = 2.480e-16
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:   10 AETAPPNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLERYYTNHICTPARVS 189
            AET P +V+F++LDDVG ND+GY S+DLG +TPF+DGL  DGVR++R Y   +CTP+R +
Sbjct:   59 AETRP-HVVFVMLDDVGFNDVGYASSDLGEMTPFLDGLMADGVRVDRLYGQQVCTPSRAA 117          
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Match: A0A6H5JIE9_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIE9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.340e-16
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    7 EAETAPPNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLERYYTNHICTPARVS 189
            +AETA PNV FI++DD+G ND+GY S DL  VTP +D LA  GV++  YYT  ICTPAR S
Sbjct:  146 QAETAKPNVFFIMVDDMGWNDIGYQSVDLQGVTPHLDRLAAGGVKMTNYYTLPICTPARAS 206          
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Match: A0A7S3XL37_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL37_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 8.620e-16
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 ESEAETAPPNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLERYYTNHICTPARVS 189
            E E +   PN++F+L+DD G ND+GY S DL  +TP ID LA DG++L+RYYT ++CTPAR S
Sbjct:   60 EEETKVKKPNIVFLLVDDQGYNDVGYNSNDLH-ITPTIDALASDGIKLDRYYTMYVCTPARAS 121          
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Match: A0A6H5KYT6_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYT6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.200e-15
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   25 PNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLERYYTNHICTPARVS 189
            PNVIFIL+DDVG ND+GY STDL  +TPF+  LA +GV L+ YY+N ICTP+R S
Sbjct:  134 PNVIFILVDDVGTNDVGYESTDLWQLTPFLTTLAAEGVILDDYYSNQICTPSRAS 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1133.1074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNM1_9PHAE1.550e-1969.09Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KIK9_9PHAE2.260e-1960.66Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
F0YCM0_AURAN2.750e-1853.97Sulfatase domain-containing protein (Fragment) n=1... [more]
D7FLS1_ECTSI5.880e-1867.27Formylglycine-dependent sulfatase n=1 Tax=Ectocarp... [more]
F0Y541_AURAN9.850e-1759.32Putative arylsulfatase n=1 Tax=Aureococcus anophag... [more]
D7G7Y4_ECTSI1.330e-1665.45Formylglycine-dependent sulfatase, C-terminal Form... [more]
F0Y937_AURAN2.480e-1658.33Putative arylsulfatase n=1 Tax=Aureococcus anophag... [more]
A0A6H5JIE9_9PHAE6.340e-1660.66Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S3XL37_HETAK8.620e-1655.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5KYT6_9PHAE2.200e-1565.45Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1133contigH-elongata_contig1133:16326..16514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue4.3e-15
Seed eggNOG ortholog2880.D7FLS1
KEGG koko:K01280
EggNOG free text desc.sulfuric ester hydrolase activity
EggNOG OGsCOG3119@1,KOG3867@2759
Ec32 orthologEc-03_005250.3
EC3.4.14.10
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFormylglycine-dependent sulfatase
Ec32 orthologEc-06_009450.1
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.2744176-CDS-H-elongata_contig1133:16325..165141622929653.2744176-CDS-H-elongata_contig1133:16325..16514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1133 16326..16514 +
1691679106.7595344-CDS-H-elongata_contig1133:16325..165141691679106.7595344-CDS-H-elongata_contig1133:16325..16514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1133 16326..16514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1133.1074.1prot_H-elongata_contig1133.1074.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1133 16326..16514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1133.1074.1

>prot_H-elongata_contig1133.1074.1 ID=prot_H-elongata_contig1133.1074.1|Name=mRNA_H-elongata_contig1133.1074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
ESEAETAPPNVIFILLDDVGMNDLGYLSTDLGTVTPFIDGLARDGVRLER
YYTNHICTPARVS
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mRNA from alignment at H-elongata_contig1133:16326..16514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1133.1074.1 ID=mRNA_H-elongata_contig1133.1074.1|Name=mRNA_H-elongata_contig1133.1074.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig1133:16326..16514+ (Himanthalia elongata Himel1 dioecious)
GAATCCGAAGCAGAGACGGCACCGCCGAACGTAATCTTTATCCTGCTAGA TGACGTTGGGATGAACGACCTGGGGTACCTCAGCACGGACTTGGGAACCG TGACTCCCTTCATTGACGGCCTGGCACGGGATGGTGTCAGGCTAGAGAGA TACTATACTAACCACATCTGTACACCAGCAAGGGTGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig1133:16326..16514+

>mRNA_H-elongata_contig1133.1074.1 ID=mRNA_H-elongata_contig1133.1074.1|Name=mRNA_H-elongata_contig1133.1074.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig1133:16326..16514+ (Himanthalia elongata Himel1 dioecious)
GAATCCGAAGCAGAGACGGCACCGCCGAACGTAATCTTTATCCTGCTAGA
TGACGTTGGGATGAACGACCTGGGGTACCTCAGCACGGACTTGGGAACCG
TGACTCCCTTCATTGACGGCCTGGCACGGGATGGTGTCAGGCTAGAGAGA
TACTATACTAACCACATCTGTACACCAGCAAGGGTGAGCGAATCCGAAGC
AGAGACGGCACCGCCGAACGTAATCTTTATCCTGCTAGATGACGTTGGGA
TGAACGACCTGGGGTACCTCAGCACGGACTTGGGAACCGTGACTCCCTTC
ATTGACGGCCTGGCACGGGATGGTGTCAGGCTAGAGAGATACTATACTAA
CCACATCTGTACACCAGCAAGGGTGAGC
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