mRNA_H-elongata_contig1125.1016.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1125.1016.1
Unique NamemRNA_H-elongata_contig1125.1016.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1125.1016.1 vs. uniprot
Match: A0A6H5JHN3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHN3_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 3.290e-52
Identity = 95/155 (61.29%), Postives = 117/155 (75.48%), Query Frame = 1 
Query:    1 MVPVSSSHDRGFALLDMGHAVVRGGSVEDGGMEYSAEVSDITARFPVRKALLLKGTGDTFIEPFKIKAKVALGEDVSKPGLALTVDVLPGVIGVVSPAKIRHAFQVLDYVTKADLVAMDGQEDPPIGLAGPNPSNGGGRLGLELMGDDALKPAEG 465
            +VPVSSS D GF LLDMG  +V GG+V+ GGM Y+AE+SD+  R P +KALL+KGT D  +EPFKIK   A+G   SKPG+AL V+V+PGV GV+SPAKIR  F+VLDYVTKADL A  G  +PP+GLA PN + GGG +G+ELMGD+ L   EG
Sbjct:  323 VVPVSSSRDNGFVLLDMGRMLVAGGTVDGGGMAYTAELSDMNVRLPAKKALLVKGTEDAVVEPFKIKVDAAMGGGDSKPGMALAVEVMPGVKGVMSPAKIRGLFRVLDYVTKADLKAEGGPGEPPVGLAAPNTAPGGGGIGVELMGDEGLVALEG 477
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BLAST of mRNA_H-elongata_contig1125.1016.1 vs. uniprot
Match: A0A6H5L0S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S6_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.380e-45
Identity = 90/148 (60.81%), Postives = 108/148 (72.97%), Query Frame = 1 
Query:    1 MVPVSSSHDRGFALLDMGHAVVRGGSVEDGGMEYSAEVSDITARFPVRKALLL-KGTGDTFIEPFKIKAKVALGEDVSKPGLALTVDVLPGVIGVVSPAKIRHAFQVLDYVTKADLVAMDGQEDPPIGLAGPNPSNGGGRLGLELMGD 441
            +VPVSSS D GF LLDMGH +V GGSVE G M YSAE+SD+  RFP  ++LLL +   D  IEPFKIKA V +G  +SKPG+A  V+V+PGV GV+SP KIR   +VLDYVTKADL    G+  PP+GLA PN S GGG LG+E MG+
Sbjct:   63 VVPVSSSLDAGFVLLDMGHLLVEGGSVEGGAMAYSAELSDMNVRFPAERSLLLVRSEMDAVIEPFKIKADVTVGGGISKPGMAFVVEVMPGVRGVMSPVKIRGLLRVLDYVTKADL----GRGGPPVGLAAPNTSTGGGGLGVERMGE 206
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BLAST of mRNA_H-elongata_contig1125.1016.1 vs. uniprot
Match: D8LPW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW3_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.420e-45
Identity = 91/148 (61.49%), Postives = 108/148 (72.97%), Query Frame = 1 
Query:    1 MVPVSSSHDRGFALLDMGHAVVRGGSVEDGGMEYSAEVSDITARFPVRKALLL-KGTGDTFIEPFKIKAKVALGEDVSKPGLALTVDVLPGVIGVVSPAKIRHAFQVLDYVTKADLVAMDGQEDPPIGLAGPNPSNGGGRLGLELMGD 441
            +VPVSSS D GF LLDMGH +V GGSVE G M YSAE+SD+  RFP  ++LLL +   D  IEPFKIKA V +G  VSKPG+A  V+V+PGV GV+SP KIR   +VLDYVTKADL    G+  PP+GLA PN S GGG LG+E MG+
Sbjct:  676 VVPVSSSLDAGFVLLDMGHMLVEGGSVEGGAMAYSAELSDMNVRFPAERSLLLVRSEMDAVIEPFKIKADVTVGGGVSKPGMAFAVEVMPGVRGVMSPEKIRGLLRVLDYVTKADL----GRGGPPVGLAAPNTSTGGGGLGVERMGE 819
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1125.1016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHN3_9PHAE3.290e-5261.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0S6_9PHAE4.380e-4560.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPW3_ECTSI4.420e-4561.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1125contigH-elongata_contig1125:4648..7220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue2.7e-46
Seed eggNOG ortholog2880.D7G938
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13
Ec32 orthologEc-15_001970.1
Exons4
Model size534
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1125.1016.1prot_H-elongata_contig1125.1016.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1125 4648..7220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.7490351-CDS-H-elongata_contig1125:4647..46991622929646.7490351-CDS-H-elongata_contig1125:4647..4699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1125 4648..4699 +
1691679104.1871047-CDS-H-elongata_contig1125:4647..46991691679104.1871047-CDS-H-elongata_contig1125:4647..4699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1125 4648..4699 +
1622929646.7732337-CDS-H-elongata_contig1125:5556..57051622929646.7732337-CDS-H-elongata_contig1125:5556..5705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1125 5557..5705 +
1691679104.2005725-CDS-H-elongata_contig1125:5556..57051691679104.2005725-CDS-H-elongata_contig1125:5556..5705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1125 5557..5705 +
1622929646.789232-CDS-H-elongata_contig1125:6538..66731622929646.789232-CDS-H-elongata_contig1125:6538..6673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1125 6539..6673 +
1691679104.212578-CDS-H-elongata_contig1125:6538..66731691679104.212578-CDS-H-elongata_contig1125:6538..6673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1125 6539..6673 +
1622929646.8072484-CDS-H-elongata_contig1125:7022..72201622929646.8072484-CDS-H-elongata_contig1125:7022..7220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1125 7023..7220 +
1691679104.2203856-CDS-H-elongata_contig1125:7022..72201691679104.2203856-CDS-H-elongata_contig1125:7022..7220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1125 7023..7220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1125.1016.1

>prot_H-elongata_contig1125.1016.1 ID=prot_H-elongata_contig1125.1016.1|Name=mRNA_H-elongata_contig1125.1016.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
MVPVSSSHDRGFALLDMGHAVVRGGSVEDGGMEYSAEVSDITARFPVRKA
LLLKGTGDTFIEPFKIKAKVALGEDVSKPGLALTVDVLPGVIGVVSPAKI
RHAFQVLDYVTKADLVAMDGQEDPPIGLAGPNPSNGGGRLGLELMGDDAL
KPAEGGETALDTEGSDEAEEKKEKEKEE
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mRNA from alignment at H-elongata_contig1125:4648..7220+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1125.1016.1 ID=mRNA_H-elongata_contig1125.1016.1|Name=mRNA_H-elongata_contig1125.1016.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2573bp|location=Sequence derived from alignment at H-elongata_contig1125:4648..7220+ (Himanthalia elongata Himel1 dioecious)
ATGGTCCCTGTCTCGTCGTCGCACGACCGCGGCTTTGCACTCCTCGACAT
GGGTGAAGATAACCGGATTTGTTTTTTCAGTAGAACATTTTCTTGAGTAA
CCCTAGACGCTGTGAACGGGTGAAGTAAAAAACATATTAGTGTATTCACA
ACTTCGAGGTCCGTGATATCTCTCCCTCTCTCATTGATATATATATATAT
ATATTGTTTTTGCATGGTTGTAAGAAGGGGGTGATGGTTGTAAGAAGGGG
GTGGGGGGGGAGTGCACATCCCGTAGTGTAGGCAGCAGCGCGGTCGCTTC
ACTTCCCTCGATGAAAATCTTTCCCAAGGAGGGGTGAGGAGTTCATCGCG
AGGCCTTAATGGCAGCCGTTTAAAGCCCTTTGAGAAGTAGGGGCGCACGG
GGGGTGGGGGCGGGGGGGGGTACATTATGTTTGTCCTGTTTTGTTTAGAA
GGATAGAAACGCACACTAGCCCTCAGTGACACACACATACAGCCCCGAAA
TAACCTGACGATGGTTGGTCACCTAGATTGCACCTCTCACGGCGCTAAGA
AGGTGTGGATGTTCGGAGGGTTGGGATGAGTTCAAGTTTTTTTTTAATAA
AATTATATGGATCGATCGAGAGAATGTAGAGGGAAAGAGTGTGTCATGGA
AGAGGAAACGGAGTATATAAGAAACTATACTGGGTTCTTTGGCGGTCAGG
ATCGACCGAAGGAGCTCTGTGCCGCCGCAGCAACGTTTTATTGTACTGTA
CTATTTTTGCGGGAGATAGGAAACAATACATAGACAAACACGTGCATACG
AGAAAATATGTGGCGACGGTCTAGAAGAGTCGGAGGTAGGGGGGGGTGGA
GGGGTTATTAAGTTTCCCGCGTGTTGTGTCCCTTTTTTGCCTCACTACAA
CTCCCCAAGGTCACGCGGTCGTCCGTGGGGGCAGCGTTGAGGACGGTGGC
ATGGAGTACTCGGCCGAGGTCAGCGACATCACAGCTAGGTTTCCCGTCAG
GAAAGCATTGCTTCTAAAGGGGACGGGGGATACTTTTATCGAGCCATTCA
AGATCAAGGTGAACTGTGGTCTAAGGTAGTTCGCTGTCTATTATCGGTGA
TATTTACGCAACACCATTATGTTGTACTTCGCATAAGATATATTGTGTAT
CTATAATATGTTAATGTGTCTGTGTATTTTTTATTTGTACATAACCACGC
AATCCGGCTCTGTAATGCTAACTCTCCTAGGCTACTCTCGCATTGATCCT
CCCAGTGTGTGTGTGTGTGTGTGTTTGTATTTATTAAATTGCACATAACC
GCGAAATCCGGCCCTGTCGTCCTAGTCATTCTATGNNNNNNNNNNACCGC
GCAATCCGGCCCTGTCGTCCTCGTCCTTCTATGCCACTCGTATTGGTCCT
CTTAGGGGGGATCAATTTGTGTGTGTGGGGGTCTATTTATTAAATTACAC
ATAACCGCGCAATCCGACTCTGTCATGCTAGCTCTTCTAGACTACTCTCG
CATTGATCCTCCCGATGGGGGATTCAAGTGTTTGTGTGTGTGTGTGTGTT
TATTAAGTTGCACATAACCGTGCAATCTGGCCCTGTCGTGCTACCAGCAG
TCCTTCTATAGGCGACTCTCGTATTGATCCTCCGAATGGGGGGGGTCAGT
GATTATACTTGTGCGTGTGTGTGTGTGTGTCTTACTATATATTATACCAG
GATATATATAAATAAATATACACCCTTTATGTTACAAAAAATGGATCTAT
GTTTTGTGAAAAAAAGTCAGAGCCGAGGGTTTCTTTTAAAATATTTACCA
TCTCCACGCCATTTTTCTTTACTCTCACTACTTTAACCACGAGCCTCCCG
TCACTCAAGCCTCACCATTGATAACAATCGGCCCAACCTAGGCGAAAGTG
GCCCTCGGAGAAGACGTCTCGAAACCGGGTTTGGCGCTGACGGTGGATGT
CCTTCCCGGGGTCATTGGGGTGGTGTCCCCGGCCAAGATCCGTCATGCCT
TCCAAGTGCTGGACTACGTCACCAAGGTCGGTCTACAGCAGTTTAGTCCG
GTTCGGTTCAGTTTCTTCTCTTCCCTTTTGTTTTGTTTTGGGAGGCCTGC
ACAAAAATTGGCGAGACTTGGGACGTGTGATACCTTGAGACGTGACACGG
CAAAAGGAACCTCTTGGCGCCAGCTTACGTCAGAGTTCATGCAATCAATT
CAATCAATCCATCAATTCAATTCAATAAACCAATTATTATATGGATAAAA
TTGTCCAATCAATCAAAAATCAATTCAATCAATTAATCCTCAATTATGAG
ACCCCCCCCCTCTTTAGATGGTATATGAGCCGTGGGCGCTGACTAAAATA
TGTTCGCTACGGATACATACTGCAGGCTGATCTGGTGGCCATGGACGGTC
AAGAGGACCCGCCGATTGGGCTAGCGGGTCCAAACCCCTCCAACGGTGGG
GGAAGGCTTGGACTGGAGCTCATGGGCGACGATGCGCTGAAGCCTGCTGA
AGGCGGGGAGACTGCGTTGGACACGGAAGGATCAGACGAGGCAGAGGAAA
AGAAGGAAAAAGAAAAGGAGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig1125:4648..7220+

>mRNA_H-elongata_contig1125.1016.1 ID=mRNA_H-elongata_contig1125.1016.1|Name=mRNA_H-elongata_contig1125.1016.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig1125:4648..7220+ (Himanthalia elongata Himel1 dioecious)
ATGGTCCCTGTCTCGTCGTCGCACGACCGCGGCTTTGCACTCCTCGACAT
GGATGGTCCCTGTCTCGTCGTCGCACGACCGCGGCTTTGCACTCCTCGAC
ATGGGTCACGCGGTCGTCCGTGGGGGCAGCGTTGAGGACGGTGGCATGGA
GTACTCGGCCGAGGTCAGCGACATCACAGCTAGGTTTCCCGTCAGGAAAG
CATTGCTTCTAAAGGGGACGGGGGATACTTTTATCGAGCCATTCAAGATC
AAGGTCACGCGGTCGTCCGTGGGGGCAGCGTTGAGGACGGTGGCATGGAG
TACTCGGCCGAGGTCAGCGACATCACAGCTAGGTTTCCCGTCAGGAAAGC
ATTGCTTCTAAAGGGGACGGGGGATACTTTTATCGAGCCATTCAAGATCA
AGGCGAAAGTGGCCCTCGGAGAAGACGTCTCGAAACCGGGTTTGGCGCTG
ACGGTGGATGTCCTTCCCGGGGTCATTGGGGTGGTGTCCCCGGCCAAGAT
CCGTCATGCCTTCCAAGTGCTGGACTACGTCACCAAGGCGAAAGTGGCCC
TCGGAGAAGACGTCTCGAAACCGGGTTTGGCGCTGACGGTGGATGTCCTT
CCCGGGGTCATTGGGGTGGTGTCCCCGGCCAAGATCCGTCATGCCTTCCA
AGTGCTGGACTACGTCACCAAGGCTGATCTGGTGGCCATGGACGGTCAAG
AGGACCCGCCGATTGGGCTAGCGGGTCCAAACCCCTCCAACGGTGGGGGA
AGGCTTGGACTGGAGCTCATGGGCGACGATGCGCTGAAGCCTGCTGAAGG
CGGGGAGACTGCGTTGGACACGGAAGGATCAGACGAGGCAGAGGAAAAGA
AGGAAAAAGAAAAGGAGGAAGCTGATCTGGTGGCCATGGACGGTCAAGAG
GACCCGCCGATTGGGCTAGCGGGTCCAAACCCCTCCAACGGTGGGGGAAG
GCTTGGACTGGAGCTCATGGGCGACGATGCGCTGAAGCCTGCTGAAGGCG
GGGAGACTGCGTTGGACACGGAAGGATCAGACGAGGCAGAGGAAAAGAAG
GAAAAAGAAAAGGAGGAA
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