mRNA_H-elongata_contig111778.957.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111778.957.1
Unique NamemRNA_H-elongata_contig111778.957.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Match: D8LH21_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH21_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 4.450e-119
Identity = 181/197 (91.88%), Postives = 188/197 (95.43%), Query Frame = 1 
Query:    1 YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGPQYP-EGRRKSYPVALVLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLLVATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE 588
            YDDIPVETSGENVP+PI SFE +MLGE+LM TT LCGY KPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLI+LLRRGGPQYP +GRRKSYPVALVLAPTRELASQI DEARRFCYR+GIAPVVIYGGADVRSQ RELERGCDLLVATPGRLVDL+ERGRISL CIQFLVLDEADRMLDMGFEPQIRRIVE
Sbjct:  192 YDDIPVETSGENVPEPIDSFELDMLGEDLMRTTNLCGYTKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLISLLRRGGPQYPNDGRRKSYPVALVLAPTRELASQIYDEARRFCYRTGIAPVVIYGGADVRSQFRELERGCDLLVATPGRLVDLLERGRISLACIQFLVLDEADRMLDMGFEPQIRRIVE 388
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BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Match: A0A6H5JCH1_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH1_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 2.600e-118
Identity = 181/197 (91.88%), Postives = 188/197 (95.43%), Query Frame = 1 
Query:    1 YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGPQYP-EGRRKSYPVALVLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLLVATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE 588
            YDDIPVETSGENVP+PI SFE +MLGE+LM TT LCGY KPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLI+LLRRGGPQYP +GRRKSYPVALVLAPTRELASQI DEARRFCYR+GIAPVVIYGGADVRSQ RELERGCDLLVATPGRLVDL+ERGRISL CIQFLVLDEADRMLDMGFEPQIRRIVE
Sbjct:  275 YDDIPVETSGENVPEPIDSFELDMLGEDLMRTTNLCGYTKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLISLLRRGGPQYPNDGRRKSYPVALVLAPTRELASQIYDEARRFCYRTGIAPVVIYGGADVRSQFRELERGCDLLVATPGRLVDLLERGRISLACIQFLVLDEADRMLDMGFEPQIRRIVE 471
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BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Match: A0A835ZB12_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB12_9STRA)

HSP 1 Score: 329 bits (844), Expect = 2.090e-107
Identity = 163/200 (81.50%), Postives = 183/200 (91.50%), Query Frame = 1 
Query:    1 YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGPQYPE--GRRK--SYPVALVLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLLVATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE 588
            YDDIPVETSGENVP+PI +F P++LG ELM  T+LCGY KPTPVQKYSIPIGIS RDLMACAQTGSGKTAGFLFPTLI+LLR GGP+YP+  GRR+  +YPVALVLAPTRELASQI DEARRFCY +G+APVVIYGGA+ RSQ+R+L+RGCDLLVATPGRLVD IERG++SL CI+FLVLDEADRMLDMGFEPQIRRIV+
Sbjct:  114 YDDIPVETSGENVPEPIETFPPDVLGPELMRCTELCGYTKPTPVQKYSIPIGISGRDLMACAQTGSGKTAGFLFPTLISLLRTGGPEYPDDGGRRQRTTYPVALVLAPTRELASQIYDEARRFCYCTGVAPVVIYGGAEARSQLRDLDRGCDLLVATPGRLVDFIERGKVSLQCIKFLVLDEADRMLDMGFEPQIRRIVQ 313
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BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Match: A0A836CEH0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEH0_9STRA)

HSP 1 Score: 317 bits (812), Expect = 7.840e-100
Identity = 166/229 (72.49%), Postives = 183/229 (79.91%), Query Frame = 1 
Query:    1 YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGPQ-----------------------------YPE--GRRKS--YPVALVLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLLVATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE 588
            YDDIPVETSGENVP+PI +F PE+LG ELM +T+LCGY KPTPVQKYSIPIGIS RDLMACAQTGSGKTAGFLFPTLI+LLR GGPQ                             YPE  GRR+   YPVALVLAPTRELASQI DEARRFCY +G+APVVIYGGA+ R+Q+R+L+RGCDLLVATPGRLVD IERG++SL CI+FLVLDEADRMLDMGFEPQIRRIVE
Sbjct:   69 YDDIPVETSGENVPEPIETFPPEILGPELMRSTELCGYLKPTPVQKYSIPIGISGRDLMACAQTGSGKTAGFLFPTLISLLRTGGPQKQKCLNVPIRSQRSFNNQLPLIAAASAAQYPEDGGRRQRSVYPVALVLAPTRELASQIYDEARRFCYCTGVAPVVIYGGAEARTQLRDLDRGCDLLVATPGRLVDFIERGKVSLQCIRFLVLDEADRMLDMGFEPQIRRIVE 297
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BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Match: A0A662XJH5_9STRA (RNA helicase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJH5_9STRA)

HSP 1 Score: 300 bits (767), Expect = 7.910e-100
Identity = 150/200 (75.00%), Postives = 169/200 (84.50%), Query Frame = 1 
Query:    1 YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGPQYPE---GR-RKSYPVALVLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLLVATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE 588
            YDDIPVETSGENVPDP+  F  E LG E++   +LC Y KPTPVQKYSIPIG+  RD+MACAQTGSGKT GFLFPTL  +LR GG   P+   GR RK +P AL+LAPTRELASQI DEA++FCY +GIAPVVIYGGA+V  Q+RELERGCD+LVATPGRLVDL+ERGRISL CI+FL+LDEADRMLDMGFEPQIRRIVE
Sbjct:   28 YDDIPVETSGENVPDPVLEFSAEELGPEVIRNLELCKYSKPTPVQKYSIPIGLQGRDMMACAQTGSGKTGGFLFPTLAAMLRVGGTPPPDVGHGRSRKIFPAALILAPTRELASQIYDEAKKFCYCTGIAPVVIYGGAEVGHQLRELERGCDMLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRIVE 227
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BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Match: A0A7S3XUS5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUS5_HETAK)

HSP 1 Score: 305 bits (782), Expect = 7.990e-100
Identity = 152/199 (76.38%), Postives = 171/199 (85.93%), Query Frame = 1 
Query:    1 YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGPQYPEG---RRKSYPVALVLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLLVATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE 588
            YDDIPVE SGENVP  I +F  E++GE LM  T LC Y+KPTPVQ+YSIPIG  +RDLMACAQTGSGKTAGFLFP LI++L +G P  PE     R+++P ALVLAPTRELASQI DEA+RFCY +GIAPVVIYGGADVR+Q+RELERGCDLLVATPGRLVDLIERGR+SL C+ FL+LDEADRMLDMGFEPQIRRIVE
Sbjct:   55 YDDIPVEVSGENVPPHIETFSVEVIGERLMANTVLCQYNKPTPVQRYSIPIGKESRDLMACAQTGSGKTAGFLFPVLISMLTKGPPAPPEEGGYARRTHPNALVLAPTRELASQIYDEAKRFCYATGIAPVVIYGGADVRNQLRELERGCDLLVATPGRLVDLIERGRVSLACVNFLILDEADRMLDMGFEPQIRRIVE 253
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BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Match: A0A7S2V445_9STRA (RNA helicase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V445_9STRA)

HSP 1 Score: 301 bits (772), Expect = 1.760e-98
Identity = 150/199 (75.38%), Postives = 172/199 (86.43%), Query Frame = 1 
Query:    1 YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGP-QYPEG--RRKSYPVALVLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLLVATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE 588
            Y DIPVE SG+N PDP+S F PE++GE+LM  T LC Y+KPTPVQ+YSIPIG   RDLMACAQTGSGKTAGFLFP L +++  G P Q  +G  RRK++PVALVLAPTRELASQI +EARRFCY +G+APVV+YGGADVR Q+R+LERGCDLLVATPGRLVDL+ERGR+SL  I+FLVLDEADRMLDMGFEPQIRRIVE
Sbjct:   49 YFDIPVEVSGDNAPDPVSEFTPELVGEQLMRNTVLCNYNKPTPVQRYSIPIGAQGRDLMACAQTGSGKTAGFLFPVLTSMITNGAPPQQGQGGYRRKTFPVALVLAPTRELASQIFNEARRFCYCTGVAPVVVYGGADVRVQLRDLERGCDLLVATPGRLVDLMERGRVSLLNIRFLVLDEADRMLDMGFEPQIRRIVE 247
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BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Match: H3G780_PHYRM (RNA helicase n=3 Tax=Phytophthora TaxID=4783 RepID=H3G780_PHYRM)

HSP 1 Score: 300 bits (769), Expect = 4.580e-98
Identity = 150/200 (75.00%), Postives = 171/200 (85.50%), Query Frame = 1 
Query:    1 YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGPQYPE---GR-RKSYPVALVLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLLVATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE 588
            YDDIPVETSGENVPDP+S F  E LG E++   +LC Y KPTPVQKYSIPIG++ RD+MACAQTGSGKT GFLFPTL  +LR GG   P+   GR RK +P AL+L+PTRELASQI +EA++FCY +GIAPVVIYGGA+V  Q+RELERGCDLLVATPGRLVDL+ERGRISL CI+FL+LDEADRMLDMGFEPQIRRIVE
Sbjct:   22 YDDIPVETSGENVPDPVSEFAAEELGPEVIRNLELCKYDKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLRVGGTPPPDVGHGRSRKIFPAALILSPTRELASQIHEEAKKFCYCTGIAPVVIYGGAEVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRIVE 221
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BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Match: W7TYZ7_9STRA (RNA helicase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYZ7_9STRA)

HSP 1 Score: 305 bits (781), Expect = 1.300e-97
Identity = 149/200 (74.50%), Postives = 174/200 (87.00%), Query Frame = 1 
Query:    1 YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGPQYPEGRRKS----YPVALVLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLLVATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE 588
            YDDIPVETSGE  P+PI+SF  +M+G +LM    LC Y KPTPVQKYS+PIG+++RDLMACAQTGSGKTAGFLFPT++++LR+G P+ P G R S    YP+ALVLAPTRELASQI DEA++FCY +G+ PVVIYGGA+VR+Q+RELERGCDLLVATPGRLVDLIER RISL  I+FL+LDEADRMLDMGFEPQIRRIVE
Sbjct:  192 YDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVE 391
[Close]
BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Match: A0A7S2AA77_TRICV (RNA helicase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AA77_TRICV)

HSP 1 Score: 298 bits (764), Expect = 4.940e-97
Identity = 145/197 (73.60%), Postives = 172/197 (87.31%), Query Frame = 1 
Query:    1 YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIPIGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGPQ-YPEGRRKSYPVALVLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLLVATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE 588
            YDDIPVETSG +VP+PI  +  E +GE+LM   +LCGY KPTPVQKYS+PIG +NRDLMACAQTGSGKTAGFLFP L+++++ GG +    GRR+SYP AL+LAPTRELASQI +EA+RF YR+GIA VV+YGGA+VR Q+R++ERGCDLLVATPGRLVDLIERGR+S+  I+FLVLDEADRMLDMGFEPQIRRIVE
Sbjct:   60 YDDIPVETSGADVPEPIEVYTEETIGEDLMRNVQLCGYSKPTPVQKYSVPIGTANRDLMACAQTGSGKTAGFLFPVLMSMIKNGGSEPLDHGRRRSYPEALLLAPTRELASQIHEEAKRFTYRTGIASVVVYGGAEVREQLRQIERGCDLLVATPGRLVDLIERGRVSMENIKFLVLDEADRMLDMGFEPQIRRIVE 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111778.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH21_ECTSI4.450e-11991.88RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JCH1_9PHAE2.600e-11891.88RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835ZB12_9STRA2.090e-10781.50RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A836CEH0_9STRA7.840e-10072.49P-loop containing nucleoside triphosphate hydrolas... [more]
A0A662XJH5_9STRA7.910e-10075.00RNA helicase (Fragment) n=1 Tax=Nothophytophthora ... [more]
A0A7S3XUS5_HETAK7.990e-10076.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V445_9STRA1.760e-9875.38RNA helicase (Fragment) n=1 Tax=Fibrocapsa japonic... [more]
H3G780_PHYRM4.580e-9875.00RNA helicase n=3 Tax=Phytophthora TaxID=4783 RepID... [more]
W7TYZ7_9STRA1.300e-9774.50RNA helicase n=4 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7S2AA77_TRICV4.940e-9773.60RNA helicase (Fragment) n=1 Tax=Trieres chinensis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111778contigH-elongata_contig111778:96..1692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.4
Seed ortholog evalue3.4e-98
Seed eggNOG ortholog2880.D8LH21
Preferred nameDDX3X
KEGG koko:K10268,ko:K11594,ko:K17642
KEGG Pathwayko04622,ko05161,ko05203,map04622,map05161,map05203
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000819,GO:0001558,GO:0001775,GO:0001817,GO:0001819,GO:0001932,GO:0001934,GO:0002164,GO:0002165,GO:0002168,GO:0002181,GO:0002183,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003729,GO:0003743,GO:0003824,GO:0003924,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005829,GO:0005886,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006915,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006996,GO:0007049,GO:0007059,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007431,GO:0007435,GO:0007552,GO:0008026,GO:0008047,GO:0008094,GO:0008104,GO:0008134,GO:0008135,GO:0008143,GO:0008150,GO:0008152,GO:0008186,GO:0008190,GO:0008219,GO:0008380,GO:0008625,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009886,GO:0009887,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010466,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010623,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010950,GO:0010951,GO:0010952,GO:0012501,GO:0012502,GO:0012505,GO:0014070,GO:0016020,GO:0016043,GO:0016055,GO:0016070,GO:0016071,GO:0016192,GO:0016246,GO:0016441,GO:0016442,GO:0016458,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017148,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019827,GO:0019867,GO:0019887,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022612,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030141,GO:0030154,GO:0030162,GO:0030177,GO:0030234,GO:0030295,GO:0030307,GO:0030308,GO:0030718,GO:0031047,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031332,GO:0031333,GO:0031369,GO:0031399,GO:0031401,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031983,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032392,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032642,GO:0032648,GO:0032722,GO:0032728,GO:0032940,GO:0032984,GO:0032988,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0033592,GO:0033674,GO:0033993,GO:0034063,GO:0034248,GO:0034249,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034774,GO:0035070,GO:0035071,GO:0035072,GO:0035075,GO:0035078,GO:0035081,GO:0035194,GO:0035272,GO:0035556,GO:0035613,GO:0035770,GO:0036098,GO:0036230,GO:0036314,GO:0036464,GO:0036477,GO:0040008,GO:0040029,GO:0042119,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042325,GO:0042327,GO:0042579,GO:0042623,GO:0042981,GO:0043021,GO:0043024,GO:0043025,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043086,GO:0043154,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043273,GO:0043280,GO:0043281,GO:0043299,GO:0043312,GO:0043539,GO:0043549,GO:0043603,GO:0043604,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044877,GO:0045055,GO:0045069,GO:0045070,GO:0045087,GO:0045321,GO:0045495,GO:0045727,GO:0045787,GO:0045859,GO:0045860,GO:0045861,GO:0045862,GO:0045893,GO:0045926,GO:0045927,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0045948,GO:0046483,GO:0046677,GO:0046685,GO:0046903,GO:0048027,GO:0048102,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048707,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051336,GO:0051338,GO:0051345,GO:0051346,GO:0051347,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060033,GO:0060205,GO:0060255,GO:0060293,GO:0060548,GO:0060828,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070035,GO:0070717,GO:0070727,GO:0070887,GO:0070925,GO:0071103,GO:0071214,GO:0071236,GO:0071243,GO:0071310,GO:0071396,GO:0071470,GO:0071649,GO:0071651,GO:0071704,GO:0071826,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0090068,GO:0090263,GO:0090304,GO:0097159,GO:0097190,GO:0097191,GO:0097193,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0097458,GO:0097617,GO:0097708,GO:0098588,GO:0098727,GO:0098772,GO:0098805,GO:0098813,GO:0099503,GO:0101002,GO:0104004,GO:0140014,GO:0140097,GO:0140098,GO:0198738,GO:1900087,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902531,GO:1902532,GO:1902680,GO:1902806,GO:1902808,GO:1903047,GO:1903506,GO:1903508,GO:1903608,GO:1903900,GO:1903902,GO:1904813,GO:1905114,GO:1990904,GO:2000045,GO:2000112,GO:2000113,GO:2000116,GO:2000117,GO:2001056,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0335@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03036,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-06_010920.1
Exons3
Model size588
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111778.957.1prot_H-elongata_contig111778.957.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111778 96..1692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.7212698-CDS-H-elongata_contig111778:95..3561622929640.7212698-CDS-H-elongata_contig111778:95..356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111778 96..356 +
1691679102.0309668-CDS-H-elongata_contig111778:95..3561691679102.0309668-CDS-H-elongata_contig111778:95..356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111778 96..356 +
1622929640.735929-CDS-H-elongata_contig111778:1023..11791622929640.735929-CDS-H-elongata_contig111778:1023..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111778 1024..1179 +
1691679102.047566-CDS-H-elongata_contig111778:1023..11791691679102.047566-CDS-H-elongata_contig111778:1023..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111778 1024..1179 +
1622929640.7513247-CDS-H-elongata_contig111778:1521..16921622929640.7513247-CDS-H-elongata_contig111778:1521..1692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111778 1522..1692 +
1691679102.0592866-CDS-H-elongata_contig111778:1521..16921691679102.0592866-CDS-H-elongata_contig111778:1521..1692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111778 1522..1692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111778.957.1

>prot_H-elongata_contig111778.957.1 ID=prot_H-elongata_contig111778.957.1|Name=mRNA_H-elongata_contig111778.957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
YDDIPVETSGENVPDPISSFEPEMLGEELMLTTKLCGYHKPTPVQKYSIP
IGISNRDLMACAQTGSGKTAGFLFPTLITLLRRGGPQYPEGRRKSYPVAL
VLAPTRELASQIQDEARRFCYRSGIAPVVIYGGADVRSQVRELERGCDLL
VATPGRLVDLIERGRISLCCIQFLVLDEADRMLDMGFEPQIRRIVE
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mRNA from alignment at H-elongata_contig111778:96..1692+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111778.957.1 ID=mRNA_H-elongata_contig111778.957.1|Name=mRNA_H-elongata_contig111778.957.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1597bp|location=Sequence derived from alignment at H-elongata_contig111778:96..1692+ (Himanthalia elongata Himel1 dioecious)
TACGACGACATCCCCGTGGAGACGTCGGGCGAGAATGTTCCCGACCCTAT
CTCGAGTTTCGAACCGGAGATGCTTGGGGAGGAGCTCATGCTTACGACCA
AGCTGTGCGGCTACCACAAGCCCACTCCCGTCCAAAAGTACTCCATCCCC
ATCGGGATTTCCAACCGCGATCTCATGGCTTGCGCCCAGACGGGGTCAGG
AAAGACCGCGGGTTTTCTGTTTCCCACGCTCATCACTCTACTGAGGAGGG
GAGGCCCACAGGTATGTACATGTACTTGTACTTGGTATTAATGTAAGGGT
TTGGCAACGATTTTGTCAGGGCCGTTTTCTAGGTCACTTGTTTGTGAGCG
AGAAGTTACCAGTATCGCGATCGTTTTTTGTATTTCATGTCTAACTAGTT
TCTTCGTTTACGTTTCTTCGAGGGTCTTGCTCTCGCCGACCTTCACGCCC
TGGGTGTTCATTTGGTCAGAAAGTTACATCGGGCATTCGGTCTTCCCACG
CGTTTTTTACAATCCCTGTCTTCTATTCGTGTGTCTTTTCGTTTGGTATT
CTCACACGCCGATTAGTTTAACACTAGAGTAACCACGGGCTGTATTTTGA
CATCAGCATTATGTGATATTCAATTATAACGGTGGGCTTCTTCCCGACAT
AATACTGTTGACCCGATACAAATATCACAACCAGGAAACCCTTTATTATG
TGATATTCAATTATAACGGTGGGCTTCTTCCCGACATAATACTGTTGACC
CGATACAATTATCACAACCGGGGAACCCTTTATTCTCTCGACACGATTTT
GTTTTCATAAGTGGCAATGTAAAGTTGTCTGCTGAATTTAAATGCTCATG
TTGTTAATGAGTTTTGAAATATGAGAAATATGAACATTTTCTTTAATCCC
TCTCCCGCGAACCTTTTCTGTGTGACAGTACCCCGAGGGCCGAAGGAAGT
CTTACCCGGTGGCGCTGGTGCTTGCGCCCACCCGTGAGCTGGCCTCTCAG
ATCCAGGATGAGGCTCGGCGCTTCTGCTACCGCTCGGGCATTGCGCCGGT
GGTGATATACGGTGGTGCCGACGTCCGCTCGCAGGTGATTTTCGTAGAGA
GCTTACGGCAGCTTTGCCCGCGTCTGATGTGTTTGTCGGAAAGATCCCTT
GAGTTTTGCAACGATCACTGTTGTGGCTTTACCGTGTTTTGGTTTCAGTA
ATCCCGAGGCTTCCAAAGCTTTGCGAAAACTTATAACCCTGAAGACTCTG
ACGTTCGATCGGTTATCCCTTACGAGACGTCTTTTGTGATAAAGCGTTGA
TACAGCGTCAACTCCTTTCTTAGATGGGATACAAAAGACCCCTCAGCTTT
TAGGATTCCGTAGATGTAATCAATTCCACAATTACAATCGTATAATGTAT
CGTCGACTTTTAATGACCGCGCTCAGGTTCGCGAGCTGGAACGCGGGTGT
GATCTTCTGGTTGCGACCCCGGGCCGTCTTGTGGACCTCATCGAACGTGG
GCGCATCTCTCTCTGCTGCATTCAATTCCTGGTGCTGGACGAGGCCGACC
GCATGCTTGACATGGGTTTTGAGCCCCAGATCAGGCGTATCGTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig111778:96..1692+

>mRNA_H-elongata_contig111778.957.1 ID=mRNA_H-elongata_contig111778.957.1|Name=mRNA_H-elongata_contig111778.957.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig111778:96..1692+ (Himanthalia elongata Himel1 dioecious)
TACGACGACATCCCCGTGGAGACGTCGGGCGAGAATGTTCCCGACCCTAT
CTCGAGTTTCGAACCGGAGATGCTTGGGGAGGAGCTCATGCTTACGACCA
AGCTGTGCGGCTACCACAAGCCCACTCCCGTCCAAAAGTACTCCATCCCC
ATCGGGATTTCCAACCGCGATCTCATGGCTTGCGCCCAGACGGGGTCAGG
AAAGACCGCGGGTTTTCTGTTTCCCACGCTCATCACTCTACTGAGGAGGG
GAGGCCCACAGTACGACGACATCCCCGTGGAGACGTCGGGCGAGAATGTT
CCCGACCCTATCTCGAGTTTCGAACCGGAGATGCTTGGGGAGGAGCTCAT
GCTTACGACCAAGCTGTGCGGCTACCACAAGCCCACTCCCGTCCAAAAGT
ACTCCATCCCCATCGGGATTTCCAACCGCGATCTCATGGCTTGCGCCCAG
ACGGGGTCAGGAAAGACCGCGGGTTTTCTGTTTCCCACGCTCATCACTCT
ACTGAGGAGGGGAGGCCCACAGTACCCCGAGGGCCGAAGGAAGTCTTACC
CGGTGGCGCTGGTGCTTGCGCCCACCCGTGAGCTGGCCTCTCAGATCCAG
GATGAGGCTCGGCGCTTCTGCTACCGCTCGGGCATTGCGCCGGTGGTGAT
ATACGGTGGTGCCGACGTCCGCTCGCAGTACCCCGAGGGCCGAAGGAAGT
CTTACCCGGTGGCGCTGGTGCTTGCGCCCACCCGTGAGCTGGCCTCTCAG
ATCCAGGATGAGGCTCGGCGCTTCTGCTACCGCTCGGGCATTGCGCCGGT
GGTGATATACGGTGGTGCCGACGTCCGCTCGCAGGTTCGCGAGCTGGAAC
GCGGGTGTGATCTTCTGGTTGCGACCCCGGGCCGTCTTGTGGACCTCATC
GAACGTGGGCGCATCTCTCTCTGCTGCATTCAATTCCTGGTGCTGGACGA
GGCCGACCGCATGCTTGACATGGGTTTTGAGCCCCAGATCAGGCGTATCG
TGGAGGTTCGCGAGCTGGAACGCGGGTGTGATCTTCTGGTTGCGACCCCG
GGCCGTCTTGTGGACCTCATCGAACGTGGGCGCATCTCTCTCTGCTGCAT
TCAATTCCTGGTGCTGGACGAGGCCGACCGCATGCTTGACATGGGTTTTG
AGCCCCAGATCAGGCGTATCGTGGAG
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