mRNA_H-elongata_contig111491.939.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111491.939.1
Unique NamemRNA_H-elongata_contig111491.939.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111491.939.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH)

HSP 1 Score: 61.2 bits (147), Expect = 8.760e-10
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:    1 REFWANDSGATEHMTQDPAGLEDYTPVPAGDRVESAGGTLLPVAGYGHLRLMVDQVNDNFTESTRQLTLKHVAHVPNLGQHNMLSTKRLTQFLYASMRVYP 303
            ++ W  DSGAT+HMT +P+ +   TPV     V +A G   P+ G G + L            T+ +TL  V  VP+L  HN+LS K++T+  Y  + +YP
Sbjct:   20 KDMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITKQFYCCVILYP 106
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BLAST of mRNA_H-elongata_contig111491.939.1 vs. uniprot
Match: A0A2P6S473_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S473_ROSCH)

HSP 1 Score: 61.2 bits (147), Expect = 9.340e-9
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:    1 REFWANDSGATEHMTQDPAGLEDYTPVPAGDRVESAGGTLLPVAGYGHLRLMVDQVNDNFTESTRQLTLKHVAHVPNLGQHNMLSTKRLTQFLYASMRVYP 303
            ++ W  DSGAT+HMT +P+ +   TPV     V +A G   P+ G G + L            T+ +TL  V  VP+L  HN+LS K++T+  Y  + +YP
Sbjct:  235 KDMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITKQFYCCVILYP 321
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BLAST of mRNA_H-elongata_contig111491.939.1 vs. uniprot
Match: A0A177TP70_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TP70_9BASI)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-7
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:   19 DSGATEHMTQDPAGLEDYTPVPAGDRVESAGGTLLPVAGYGHLRLMVDQVNDNFTESTRQLTLKHVAHVPN-LGQHNMLSTKRLTQ 273
            D+G++ H+  DP+ L DY        +E A G L+PVAGYG+LR+         T++  ++ LK VAH P+ +G  N++  KRLT+
Sbjct:  754 DTGSSRHIVADPSSLTDYRNAAPETGIECANGGLMPVAGYGNLRVT--------TQAGLKIELKDVAHCPSAIG--NLIGGKRLTK 829
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BLAST of mRNA_H-elongata_contig111491.939.1 vs. uniprot
Match: A0A6A3AES5_HIBSY (gag_pre-integrs domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AES5_HIBSY)

HSP 1 Score: 50.8 bits (120), Expect = 3.930e-5
Identity = 31/88 (35.23%), Postives = 45/88 (51.14%), Query Frame = 1 
Query:   10 WANDSGATEHMTQDPAGLEDYTPVPAGDRVESAGGTLLPVAGYGHLRLMVDQVNDNFTESTRQLTLKHVAHVPNLGQHNMLSTKRLTQ 273
            W  D+GAT HMT D A L++  P     RV    GT +P++  G +  +V         ++  L L  V  VPNL + N+LS  +LT+
Sbjct:  260 WYTDTGATSHMTNDVAALDNSVPYTGNQRVYVGNGTSMPISCVGSISSIV---------ASHPLPLSDVLLVPNLTK-NLLSISKLTR 337
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BLAST of mRNA_H-elongata_contig111491.939.1 vs. uniprot
Match: A0A6A2ZK19_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZK19_HIBSY)

HSP 1 Score: 50.4 bits (119), Expect = 5.640e-5
Identity = 31/88 (35.23%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:   10 WANDSGATEHMTQDPAGLEDYTPVPAGDRVESAGGTLLPVAGYGHLRLMVDQVNDNFTESTRQLTLKHVAHVPNLGQHNMLSTKRLTQ 273
            W  D+GAT HMT D A L++  P     RV    GT +P++  G +  +V         ++  L L  V  VPNL + N+LS   LT+
Sbjct:  180 WYTDTGATSHMTNDVAALDNSVPYTGNQRVYIGNGTSMPISRIGSISSIV---------TSHPLPLSDVLLVPNLTK-NLLSISNLTR 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111491.939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2P6P2V5_ROSCH8.760e-1035.64Uncharacterized protein n=1 Tax=Rosa chinensis Tax... [more]
A0A2P6S473_ROSCH9.340e-935.64Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A177TP70_9BASI2.910e-738.37Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A6A3AES5_HIBSY3.930e-535.23gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6A2ZK19_HIBSY5.640e-535.23Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111491contigH-elongata_contig111491:1270..1572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.4221728-CDS-H-elongata_contig111491:1269..15721622929638.4221728-CDS-H-elongata_contig111491:1269..1572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111491 1270..1572 +
1691679101.1670065-CDS-H-elongata_contig111491:1269..15721691679101.1670065-CDS-H-elongata_contig111491:1269..1572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111491 1270..1572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111491.939.1prot_H-elongata_contig111491.939.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111491 1270..1572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111491.939.1

>prot_H-elongata_contig111491.939.1 ID=prot_H-elongata_contig111491.939.1|Name=mRNA_H-elongata_contig111491.939.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
REFWANDSGATEHMTQDPAGLEDYTPVPAGDRVESAGGTLLPVAGYGHLR
LMVDQVNDNFTESTRQLTLKHVAHVPNLGQHNMLSTKRLTQFLYASMRVY
P
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mRNA from alignment at H-elongata_contig111491:1270..1572+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111491.939.1 ID=mRNA_H-elongata_contig111491.939.1|Name=mRNA_H-elongata_contig111491.939.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig111491:1270..1572+ (Himanthalia elongata Himel1 dioecious)
AGAGAATTCTGGGCGAACGATAGCGGTGCTACAGAGCATATGACACAAGA
CCCGGCGGGTCTAGAAGATTACACGCCGGTACCCGCGGGAGATCGAGTGG
AGAGCGCCGGCGGTACGCTCCTTCCGGTGGCGGGATATGGGCATCTCCGC
CTCATGGTGGACCAAGTCAACGACAACTTTACCGAATCGACGCGCCAGCT
AACGCTGAAGCACGTCGCACATGTGCCGAATCTTGGGCAGCATAATATGC
TCTCTACGAAACGGCTGACGCAGTTTCTTTACGCGTCGATGCGTGTCTAC
CCA
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Coding sequence (CDS) from alignment at H-elongata_contig111491:1270..1572+

>mRNA_H-elongata_contig111491.939.1 ID=mRNA_H-elongata_contig111491.939.1|Name=mRNA_H-elongata_contig111491.939.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig111491:1270..1572+ (Himanthalia elongata Himel1 dioecious)
AGAGAATTCTGGGCGAACGATAGCGGTGCTACAGAGCATATGACACAAGA
CCCGGCGGGTCTAGAAGATTACACGCCGGTACCCGCGGGAGATCGAGTGG
AGAGCGCCGGCGGTACGCTCCTTCCGGTGGCGGGATATGGGCATCTCCGC
CTCATGGTGGACCAAGTCAACGACAACTTTACCGAATCGACGCGCCAGCT
AACGCTGAAGCACGTCGCACATGTGCCGAATCTTGGGCAGCATAATATGC
TCTCTACGAAACGGCTGACGCAGTTTCTTTACGCGTCGATGCGTGTCTAC
CCAAGAGAATTCTGGGCGAACGATAGCGGTGCTACAGAGCATATGACACA
AGACCCGGCGGGTCTAGAAGATTACACGCCGGTACCCGCGGGAGATCGAG
TGGAGAGCGCCGGCGGTACGCTCCTTCCGGTGGCGGGATATGGGCATCTC
CGCCTCATGGTGGACCAAGTCAACGACAACTTTACCGAATCGACGCGCCA
GCTAACGCTGAAGCACGTCGCACATGTGCCGAATCTTGGGCAGCATAATA
TGCTCTCTACGAAACGGCTGACGCAGTTTCTTTACGCGTCGATGCGTGTC
TACCCA
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