mRNA_H-elongata_contig110695.884.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Match: D8LBS0_ECTSI (eIF-5a domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS0_ECTSI) HSP 1 Score: 216 bits (550), Expect = 7.100e-70 Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1
Query: 1 MATEDKLNDYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATNIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLT 327
MATEDKLNDYDFTG DAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTAT+IFTGKKLEDVIPSTHTTSVPVV RNEYQLLDISDDGFCSLLT
Sbjct: 39 MATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLT 147
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Match: A0A6H5KDL5_9PHAE (eIF-5a domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL5_9PHAE) HSP 1 Score: 216 bits (550), Expect = 3.980e-69 Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1
Query: 1 MATEDKLNDYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATNIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLT 327
MATEDKLNDYDFTG DAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTAT+IFTGKKLEDVIPSTHTTSVPVV RNEYQLLDISDDGFCSLLT
Sbjct: 93 MATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLT 201
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Match: A0A835Z7R2_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7R2_9STRA) HSP 1 Score: 177 bits (448), Expect = 8.470e-55 Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 1
Query: 4 ATEDKLNDYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATNIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLT 327
AT++ LN+YDFT +DAGASHT P +AGQIRKGGYIVIKG PCKV NVSTSKTGKHGHAKANFTA +IFTGKKLED++P++H TSVP V R +YQLLDISDDGF SLLT
Sbjct: 6 ATDEALNNYDFTSSDAGASHTFPMDAGQIRKGGYIVIKGRPCKVANVSTSKTGKHGHAKANFTAIDIFTGKKLEDIVPTSHATSVPNVARVDYQLLDISDDGFLSLLT 113
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Match: A0A7S2UU65_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU65_9STRA) HSP 1 Score: 163 bits (412), Expect = 2.170e-49 Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 1
Query: 16 KLNDYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATNIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLT 327
KL+D+ F ++GAS TIP EAGQIRKGG+IVIKG PCKVVNVSTSKTGKHGHAKANFTA +IFTGKK ED++P+THTTSVP V R EYQL+DISDDG+ SLLT
Sbjct: 7 KLDDFHFDTGESGASLTIPMEAGQIRKGGHIVIKGKPCKVVNVSTSKTGKHGHAKANFTAIDIFTGKKYEDIVPTTHTTSVPNVSRAEYQLIDISDDGYLSLLT 110
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Match: M4B4L4_HYAAE (Eukaryotic translation initiation factor 5A n=18 Tax=Peronosporaceae TaxID=4777 RepID=M4B4L4_HYAAE) HSP 1 Score: 160 bits (406), Expect = 1.610e-48 Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 1
Query: 1 MATEDKLNDYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATNIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLL 324
MA E++ D+ F DAGAS T PSEAGQIRKGG+I+IKGHPCKVVN+STSKTGKHGHAK NFTA +IFT KK ED++PSTHTTSVP V R EY LLDI+DD FCSL+
Sbjct: 1 MAEEEQ--DFTFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNMSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLM 106
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Match: A0A6A3TKK1_9STRA (Eukaryotic translation initiation factor 5A n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TKK1_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.180e-47 Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = 1
Query: 10 EDKLNDYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATNIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLL 324
E + +D++F DAGAS T PSEAGQIRKGG+I+IKGHPCKVVNVSTSKTGKHGHAK NFTA +IFT KK ED++PSTHTTSVP V R EY LLDI+DD F SL+
Sbjct: 20 EHEEHDFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFVSLM 124
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Match: K3WUI8_GLOUD (Eukaryotic translation initiation factor 5A n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUI8_GLOUD) HSP 1 Score: 158 bits (400), Expect = 1.280e-47 Identity = 76/101 (75.25%), Postives = 86/101 (85.15%), Query Frame = 1
Query: 22 NDYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATNIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLL 324
+DY F DAGAS T P EAGQIRKGG+I+IKGHPCKVV+VSTSKTGKHGHAK NFTA +IFT KKLED++PSTHTTSVP V R+EY LLDI+DD F SL+
Sbjct: 3 DDYTFESTDAGASDTFPCEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRSEYTLLDITDDDFLSLM 103
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Match: A0A024GN65_9STRA (Eukaryotic translation initiation factor 5A n=3 Tax=Albugo TaxID=65356 RepID=A0A024GN65_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.870e-47 Identity = 76/101 (75.25%), Postives = 84/101 (83.17%), Query Frame = 1
Query: 22 NDYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATNIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLL 324
+DY F DAGAS T PSEAGQIRKGG+I+IK PCKVVNVSTSKTGKHGHAK NFTA NIFT KKLED++PSTHTT VP V R EY LLDIS+DGF S++
Sbjct: 4 DDYSFASTDAGASDTYPSEAGQIRKGGFIMIKRQPCKVVNVSTSKTGKHGHAKCNFTALNIFTNKKLEDIVPSTHTTEVPFVSRKEYTLLDISEDGFVSIM 104
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Match: W7U6Y6_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Y6_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.990e-47 Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 1
Query: 19 LNDYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATNIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLL 324
+ DYDF+G AGAS PSEAGQI+KGGYI+IKG PCKVVNVSTSKTGKHGHAKANFTA +IF GKK+EDV+P+THTT VP V R+EYQLLDI +DGF SLL
Sbjct: 9 IEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLL 109
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Match: A0A5D6XTX1_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTX1_9STRA) HSP 1 Score: 156 bits (395), Expect = 7.370e-47 Identity = 76/100 (76.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query: 25 DYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATNIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLL 324
DY F DAGAS T P EAGQIRKGG+I+IKGHPCKVV+VSTSKTGKHGHAK NFTA +IFT KKLED++PSTHTTSVP V R EY LLDISDD F +L+
Sbjct: 5 DYTFESTDAGASDTYPCEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVARAEYTLLDISDDDFVTLM 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110695.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig110695.884.1 >prot_H-elongata_contig110695.884.1 ID=prot_H-elongata_contig110695.884.1|Name=mRNA_H-elongata_contig110695.884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp MATEDKLNDYDFTGADAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTback to top mRNA from alignment at H-elongata_contig110695:1112..1781+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig110695.884.1 ID=mRNA_H-elongata_contig110695.884.1|Name=mRNA_H-elongata_contig110695.884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=670bp|location=Sequence derived from alignment at H-elongata_contig110695:1112..1781+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig110695:1112..1781+ >mRNA_H-elongata_contig110695.884.1 ID=mRNA_H-elongata_contig110695.884.1|Name=mRNA_H-elongata_contig110695.884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig110695:1112..1781+ (Himanthalia elongata Himel1 dioecious)back to top |