mRNA_H-elongata_contig110219.836.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110219.836.1
Unique NamemRNA_H-elongata_contig110219.836.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Match: D7G7C0_ECTSI (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 3.650e-61
Identity = 103/115 (89.57%), Postives = 113/115 (98.26%), Query Frame = 1 
Query:    1 EQALHSLSLDHYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
            ++ALH+LSLDHY VFIQNQECVRHV+AQG+ MEGHL++LLT+VHGLG+EFSVFQREAAEL+GGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS
Sbjct:   57 DEALHTLSLDHYRVFIQNQECVRHVRAQGKEMEGHLASLLTEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 171
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BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Match: A0A836CL87_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL87_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.880e-32
Identity = 66/118 (55.93%), Postives = 83/118 (70.34%), Query Frame = 1 
Query:    1 EQALHSLSLDHYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVR-----SDLMEEALSIATFASTLERRH 339
            ++ALH LSLD Y VFI NQ+CVRH++ +G  M  H+ AL   + GL   F+ FQ+EAAEL+ GH+RN+QTL HHMQLVELLE+PQLMD CVR     S   E+AL++A F   L  RH
Sbjct:   27 DEALHDLSLDQYRVFIVNQDCVRHMKLKGADMAQHIRALEEGLEGLAGGFTTFQKEAAELLAGHRRNKQTLAHHMQLVELLEIPQLMDTCVRNSGADSAFAEDALALAGFTQGLLARH 144
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BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Match: W7TN52_9STRA (Conserved oligomeric Golgi complex subunit 8 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN52_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.950e-25
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 EQALHSLSLDHYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 339
            +Q L +L   HY   I+N EC+  +Q +G   +  L+AL  +V GL      F   A  ++G  KRNRQT +HH+QLVELLEVPQ+MDAC+R+ L +EA+ +  FA+TLERRH
Sbjct:   25 QQTLEALYRSHYTTIIENYECMTFIQERGTEFQADLTALQEEVGGLKEACGPFTAGAQAIVGDLKRNRQTFQHHLQLVELLEVPQVMDACLRNGLYDEAVEVVAFANTLERRH 137
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BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Match: A0A7S2V501_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V501_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.210e-21
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:  157 FQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHR 342
            F  EA  L+G HKRNRQT +HH+QLVELLEVPQLMDACVR+ L EEALSIA FASTLERRHR
Sbjct:    4 FSSEATVLLGRHKRNRQTGQHHLQLVELLEVPQLMDACVRNGLYEEALSIAQFASTLERRHR 65
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BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Match: A0A6J8BXY1_MYTCO (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BXY1_MYTCO)

HSP 1 Score: 89.0 bits (219), Expect = 3.100e-19
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:    4 QALHSLSLDHYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
            Q   +L+  HY  FIQ  EC R +    Q +E H+  LL ++  L  E  V  ++A E+    + N  TL+ H QL+E+LE+PQLMD CVR+   EEAL +A     LE++H S
Sbjct:   59 QETQNLAFTHYKTFIQTAECSREIFEDFQIIEKHVDNLLQNLPSLSEECEVVTKQAQEINSSRRMNNLTLQRHTQLLEVLEIPQLMDTCVRNGYFEEALELAAHVKRLEKKHSS 172
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BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Match: A0A6J8C3C0_MYTCO (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8C3C0_MYTCO)

HSP 1 Score: 89.0 bits (219), Expect = 2.800e-18
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:    4 QALHSLSLDHYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
            Q   +L+  HY  FIQ  EC R +    Q +E H+  LL ++  L  E  V  ++A E+    + N  TL+ H QL+E+LE+PQLMD CVR+   EEAL +A     LE++H S
Sbjct:   59 QETQNLAFTHYKTFIQTAECSREIFEDFQIIEKHVDNLLQNLPSLSEECEVVTKQAQEINSSRRMNNLTLQRHTQLLEVLEIPQLMDTCVRNGYFEEALELAAHVKRLEKKHSS 172
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BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Match: A0A8B6EIA4_MYTGA (Conserved oligomeric Golgi complex subunit 8 n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EIA4_MYTGA)

HSP 1 Score: 87.8 bits (216), Expect = 7.140e-18
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    4 QALHSLSLDHYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 339
            Q   +L+  HY  FIQ  EC R +    Q +E H+  LL ++  L  E  V  ++A E+    + N  TL+ H QL+E+LE+PQLMD CVR+   EEAL +A     LE++H
Sbjct:   59 QETQNLAFTHYKTFIQTAECSREIFEDFQIIEKHVDNLLQNLPSLSEECEVVTKQAQEINSSRRMNNLTLQRHTQLLEVLEIPQLMDTCVRNGYFEEALELAAHVKRLEKKH 170
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BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Match: A0A6A5FPD5_PERFL (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Perca fluviatilis TaxID=8168 RepID=A0A6A5FPD5_PERFL)

HSP 1 Score: 85.5 bits (210), Expect = 1.940e-17
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    4 QALHSLSLDHYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 339
            Q    L+  +Y  FI+  +C +H+      +EG +S LL  + G G     F +EA E+    + N  TL  H +++E+LE+PQLMD CVR+   EEAL +A +A  LE++H
Sbjct:   61 QQTRELAFSNYQTFIRTADCTQHIYRDFGRVEGSVSRLLDKLPGFGERCRGFVKEAEEIGASRRMNSLTLNRHTEILEILEIPQLMDTCVRNGYYEEALELAAYAKRLEKKH 172
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BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Match: A0A665TTP8_ECHNA (Conserved oligomeric Golgi complex subunit 8 n=3 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665TTP8_ECHNA)

HSP 1 Score: 85.9 bits (211), Expect = 3.350e-17
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:    4 QALHSLSLDHYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 339
            Q    L+  +Y  FI+  +C  H+      +E  +S LL  + G G +   F +EA E+ G  + N  TL  H +++E+LE+PQLMD CVR+   EEAL +A +   LER+H
Sbjct:   61 QQTRELAFSNYQTFIRTADCTEHIYRDFGRVESSVSRLLDKLPGFGEKCRGFMKEAEEIGGSRRMNSLTLNRHTEILEILEIPQLMDTCVRNGYYEEALELAAYVKRLERKH 172
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BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Match: UPI00196687CB (conserved oligomeric Golgi complex subunit 8 n=1 Tax=Perca fluviatilis TaxID=8168 RepID=UPI00196687CB)

HSP 1 Score: 85.5 bits (210), Expect = 4.430e-17
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    4 QALHSLSLDHYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 339
            Q    L+  +Y  FI+  +C +H+      +EG +S LL  + G G     F +EA E+    + N  TL  H +++E+LE+PQLMD CVR+   EEAL +A +A  LE++H
Sbjct:   61 QQTRELAFSNYQTFIRTADCTQHIYRDFGRVEGSVSRLLDKLPGFGERCRGFVKEAEEIGASRRMNSLTLNRHTEILEILEIPQLMDTCVRNGYYEEALELAAYAKRLEKKH 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110219.836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7C0_ECTSI3.650e-6189.57Conserved oligomeric Golgi complex subunit 8 n=2 T... [more]
A0A836CL87_9STRA2.880e-3255.93Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
W7TN52_9STRA8.950e-2547.79Conserved oligomeric Golgi complex subunit 8 n=5 T... [more]
A0A7S2V501_9STRA3.210e-2179.03Conserved oligomeric Golgi complex subunit 8 (Frag... [more]
A0A6J8BXY1_MYTCO3.100e-1940.35Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
A0A6J8C3C0_MYTCO2.800e-1840.35Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
A0A8B6EIA4_MYTGA7.140e-1840.18Conserved oligomeric Golgi complex subunit 8 n=3 T... [more]
A0A6A5FPD5_PERFL1.940e-1737.50Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
A0A665TTP8_ECHNA3.350e-1737.50Conserved oligomeric Golgi complex subunit 8 n=3 T... [more]
UPI00196687CB4.430e-1737.50conserved oligomeric Golgi complex subunit 8 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110219contigH-elongata_contig110219:565..1716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.9
Seed ortholog evalue6.2e-52
Seed eggNOG ortholog2880.D7G7C0
Preferred nameCOG8
KEGG koko:K20295
GOsGO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0007275,GO:0007548,GO:0008104,GO:0008150,GO:0008406,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0022414,GO:0030334,GO:0031090,GO:0031984,GO:0032258,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035262,GO:0040012,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0061458,GO:0061919,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023,GO:2000145
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2069@1,KOG2069@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.577546-CDS-H-elongata_contig110219:564..6811622929628.577546-CDS-H-elongata_contig110219:564..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110219 565..681 -
1691679097.4824624-CDS-H-elongata_contig110219:564..6811691679097.4824624-CDS-H-elongata_contig110219:564..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110219 565..681 -
1622929628.5947287-CDS-H-elongata_contig110219:1488..17161622929628.5947287-CDS-H-elongata_contig110219:1488..1716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110219 1489..1716 -
1691679097.498559-CDS-H-elongata_contig110219:1488..17161691679097.498559-CDS-H-elongata_contig110219:1488..1716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110219 1489..1716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110219.836.1prot_H-elongata_contig110219.836.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110219 565..1716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110219.836.1

>prot_H-elongata_contig110219.836.1 ID=prot_H-elongata_contig110219.836.1|Name=mRNA_H-elongata_contig110219.836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
EQALHSLSLDHYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEF
SVFQREAAELIGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEAL
SIATFASTLERRHRS
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mRNA from alignment at H-elongata_contig110219:565..1716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110219.836.1 ID=mRNA_H-elongata_contig110219.836.1|Name=mRNA_H-elongata_contig110219.836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1152bp|location=Sequence derived from alignment at H-elongata_contig110219:565..1716- (Himanthalia elongata Himel1 dioecious)
GAGCAGGCACTGCACTCTCTGAGCTTAGATCACTACCACGTCTTCATACA
GAACCAGGAGTGCGTGCGGCACGTACAGGCCCAGGGCCAGGCGATGGAAG
GCCACCTGTCCGCCCTACTGACGGACGTGCACGGTCTCGGCTCCGAGTTT
TCCGTATTCCAGAGAGAGGCAGCAGAACTCATCGGGGGCCACAAGCGGAA
CAGGCAGACGCTGAAGCACCACATGCAGGTATAGTACACGCCTTTTTTTA
ATTTTATTTTTTTATGCGCCATTGGAAGAAATGGAGAGGAAATGGCGCGA
GATCTTTCTTTTTGTTGAAAAAAAAAGACGCAAATTACTAAATGGATACG
AGCGATTAGTTGTGTTATCGAGGCAGCAAAAACGTCGAACATTCTTACAT
CATTCCATCCCCCCATAAAACAACCATGATTAGTTATTATACTGCCACTA
CTGTACTGCCACTACTGTACCCCCGTTCTGGTGGTGACCTCGCGTCTCCC
ATCAAAGAGACGTATTGAGTTCTCCACTGGTGCGTTCTTCAAGGCAATTC
GTGTCCCTGCGCCTTATGGTCATCACATATCGCAGATTATCGATCAATTG
GATTTTGTTGCATCCTTCTTGTAGTCAGCTGAACAAGGGAAACTTATTTT
CCTCCTGTCCCCGTTCGCGCCTGAGAATTTGGCCTCGCGAGACGGGTTCG
GCCGTCCCGCGTCAGCCTGCTCATTCTCTCAACCCAGTCTGAATCTGGTG
CATACTCCCGGGATCCTCTCGATCCTCCCGTTTTCCGCGACGGCGTTTAC
CGCCGTGAGTCCGCCGACACTGAGCCGGCAGTCCTCAAGGTAGCTTGAGT
AACGGGTGCAGCCTATTCAGGTAACCCCATGTAAGCCTCTATTTTCCCAC
ACCCACTATGGGTAGAATGGGCATGTGCGATACAGTCACAGACAGTATCA
ATACTGGAGGTTGGTTATTGTTAAGTGGTTATTTGCTGCTCAACCCAATC
AGTTCCAATACGTGTGTGTGTGTGTGTTGCGACAGCTCGTTGAGCTACTG
GAGGTGCCCCAGCTGATGGACGCCTGCGTCCGGAGCGATTTGATGGAGGA
GGCTCTTTCGATCGCCACTTTCGCCAGCACGCTGGAACGGCGGCATCGGA
GT
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Coding sequence (CDS) from alignment at H-elongata_contig110219:565..1716-

>mRNA_H-elongata_contig110219.836.1 ID=mRNA_H-elongata_contig110219.836.1|Name=mRNA_H-elongata_contig110219.836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig110219:565..1716- (Himanthalia elongata Himel1 dioecious)
GAGCAGGCACTGCACTCTCTGAGCTTAGATCACTACCACGTCTTCATACA
GAACCAGGAGTGCGTGCGGCACGTACAGGCCCAGGGCCAGGCGATGGAAG
GCCACCTGTCCGCCCTACTGACGGACGTGCACGGTCTCGGCTCCGAGTTT
TCCGTATTCCAGAGAGAGGCAGCAGAACTCATCGGGGGCCACAAGCGGAA
CAGGCAGACGCTGAAGCACCACATGCAGGAGCAGGCACTGCACTCTCTGA
GCTTAGATCACTACCACGTCTTCATACAGAACCAGGAGTGCGTGCGGCAC
GTACAGGCCCAGGGCCAGGCGATGGAAGGCCACCTGTCCGCCCTACTGAC
GGACGTGCACGGTCTCGGCTCCGAGTTTTCCGTATTCCAGAGAGAGGCAG
CAGAACTCATCGGGGGCCACAAGCGGAACAGGCAGACGCTGAAGCACCAC
ATGCAGCTCGTTGAGCTACTGGAGGTGCCCCAGCTGATGGACGCCTGCGT
CCGGAGCGATTTGATGGAGGAGGCTCTTTCGATCGCCACTTTCGCCAGCA
CGCTGGAACGGCGGCATCGGAGTCTCGTTGAGCTACTGGAGGTGCCCCAG
CTGATGGACGCCTGCGTCCGGAGCGATTTGATGGAGGAGGCTCTTTCGAT
CGCCACTTTCGCCAGCACGCTGGAACGGCGGCATCGGAGT
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