mRNA_H-elongata_contig11.813.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11.813.1
Unique NamemRNA_H-elongata_contig11.813.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 3.040e-67
Identity = 135/317 (42.59%), Postives = 187/317 (58.99%), Query Frame = 1
Query:   25 VRRAVWDMLYADGACIISRSTQGLAKMMKVTVEVCRSFALTASTKKTETMCMPPPRTPRT------MVRFEVAGKSYRQVQTFTYLGGAVAETPDMSVEIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTWTLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEATLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQSDIRAFDITG---------------NW-KAIALKAEI-WGEIVAEGGRRFMAAWRKEELDAARLRQKKR 906
            VRRAVW MLYAD A ++S+S  GLA+MM + VEV R F LT S +KTET+ M      R       ++  E AG+ Y Q   F YLGG V E  D++ EI  R++A  + IRRY  EL+D+P     LK R++++EA+EALLYGC TW+ R+N Y   +T HHR+LLR IG +RKR  +R +SY +A++   C+S+EAT+R R LL+AG + R   G L KR+ FG L G    GRG  E+ W   ++ D++ F+                  +W +A  ++  + W   V +G  RFMA+W K E  A+R R  KR
Sbjct:  277 VRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 593          
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 2.950e-66
Identity = 134/317 (42.27%), Postives = 184/317 (58.04%), Query Frame = 1
Query:   25 VRRAVWDMLYADGACIISRSTQGLAKMMKVTVEVCRSFALTASTKKTETMCMPPPRTPRT------MVRFEVAGKSYRQVQTFTYLGGAVAETPDMSVEIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTWTLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEATLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQSDIRAFDI-----TGNWKAIALKAEIWGEI------------VAEGGRRFMAAWRKEELDAARLRQKKR 906
            VRRAVW MLYAD A ++S+S  GLA+MM + VEV R F LT S +KTET+ M      R       ++  E AG+ Y Q   F YLGG V E  D++ EI  R++A  + IRRY  EL+D+P     LK R++++EA+EALLYGC TW+ R+N Y   +T HHR+LLR IG +RKR  +R +SY +A++   C+S+EAT+R R LL+AG + R   G L KR+ FG L G    G+G  E+ W   ++ D++ F+      T       +   +W E             V +G  RFMA+W K E  A+R R  KR
Sbjct:  389 VRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGADRFMASWHKGEEKASRQRAIKR 705          
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 2.750e-65
Identity = 133/317 (41.96%), Postives = 185/317 (58.36%), Query Frame = 1
Query:   25 VRRAVWDMLYADGACIISRSTQGLAKMMKVTVEVCRSFALTASTKKTETMCMPPPRTPRT------MVRFEVAGKSYRQVQTFTYLGGAVAETPDMSVEIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTWTLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEATLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQSDIRAFDI-----TGNWKAIALKAEIWGEI------------VAEGGRRFMAAWRKEELDAARLRQKKR 906
            VRRAVW MLYAD A ++S+S  GLA+MM + VEV R F LT S +KTET+ M      R       ++  E AG+ Y Q   F YLGG V E  D++ EI  R++A  + I+RY  EL+D+P     LK R++++EA+EALLYGC TW+ R+N Y   +T HHR+LLR IG +RKR  +R +SY +A++   C+S+EAT+R R LL+AG + R   G L KR+ FG L G    GRG  E+ W   ++ D++ F+      T       +   +W E             V +G  RFMA+W K + +A+R R  KR
Sbjct:  774 VRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1090          
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 8.040e-65
Identity = 126/310 (40.65%), Postives = 178/310 (57.42%), Query Frame = 1
Query:   46 MLYADGACIISRSTQGLAKMMKVTVEVCRSFALTASTKKTETMCMPPPRTPRT------MVRFEVAGKSYRQVQTFTYLGGAVAETPDMSVEIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTWTLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEATLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQSDIRAFDI-----TGNWKAIALKAEIWGEI------------VAEGGRRFMAAWRKEELDAARLRQKKR 906
            MLYAD A ++S+S  GLA+MM + VEV R F LT S +KTET+ M      R       ++  E AG+ Y Q   F YLGG V E  D++ EI  R++A  + I+RY  EL+D+P     LK R++++EA+EALLYGC TW+ R+N Y   +T HHR+LLR IG +RKR  +R +SY +A++   C+S+EAT+R R LL+AG + R   G L KR+ FG L G    G+G  E+ W   ++ D++ F+      T       +   +W E             V +G  RFMA+W K + +A R R  KR
Sbjct:    1 MLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANRQRAIKR 310          
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 9.210e-65
Identity = 131/317 (41.32%), Postives = 184/317 (58.04%), Query Frame = 1
Query:   25 VRRAVWDMLYADGACIISRSTQGLAKMMKVTVEVCRSFALTASTKKTETMCMPPPRTPRT------MVRFEVAGKSYRQVQTFTYLGGAVAETPDMSVEIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTWTLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEATLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQSDIRAFDI-----TGNWKAIALKAEIWGEI------------VAEGGRRFMAAWRKEELDAARLRQKKR 906
            VRRAVW  LYAD A ++S+S  GLA+MM + VEV R F LT S +KTET+ M      R       ++  E AG+ Y Q   F YLGG V E  D++ EI  R++A  + I+RY  EL+D+P     LK R++++EA+EALLYGC TW+ R+N Y   +T HHR+LLR IG +RKR  +R +SY +A++   C+S+EAT+R R LL+AG + R   G L KR+ FG L G    G+G  E+ W   ++ D++ F+      T       +   +W E             V +G  RFMA+W K + +A+R R  KR
Sbjct:  445 VRRAVWGRLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 761          
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 2.510e-64
Identity = 128/317 (40.38%), Postives = 181/317 (57.10%), Query Frame = 1
Query:   25 VRRAVWDMLYADGACIISRSTQGLAKMMKVTVEVCRSFALTASTKKTETMCMPPPRTPRT------MVRFEVAGKSYRQVQTFTYLGGAVAETPDMSVEIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTWTLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEATLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQSDIRAFDI-----TGNWKAIALKAEIWGEI------------VAEGGRRFMAAWRKEELDAARLRQKKR 906
            VRRAVW MLYAD A ++S+S  GLA+MM + VEV R F LT S +KTET+ M      R       ++  E AG+ Y Q   F YLGG + E  D++ EI  R++A  + IRRY  EL+D+P     LK R++++EA+ ALLYGC TW+ R++ Y   +T HHR+LLR IG +RK   +R +SY +A++   C+S+EAT+R R LL+AG + R   G L KR+ FG L G    G+G  E+ W   ++ D++ F+      T       +   +W E             V +G  RF A+W K +  A+R R  KR
Sbjct:  116 VRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFTASWHKGKEKASRQRAIKR 432          
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 2.770e-64
Identity = 132/317 (41.64%), Postives = 185/317 (58.36%), Query Frame = 1
Query:   25 VRRAVWDMLYADGACIISRSTQGLAKMMKVTVEVCRSFALTASTKKTETMCMPPPRTPRT------MVRFEVAGKSYRQVQTFTYLGGAVAETPDMSVEIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTWTLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEATLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQSDIRAFDI-----TGNWKAIALKAEIWGEI------------VAEGGRRFMAAWRKEELDAARLRQKKR 906
            VRRAVW MLYAD A ++S+S  GLA+MM + VEV R F LT S +KTET+ M      R       ++  E AG+ Y Q   F YLGG V E  D++ EI  R++A  + I+RY  EL+D+P     LK R++++EA+EALLYGC TW+ R+N Y   +T HHR+LLR IG +RKR  +R +SY +A++   C+S+EAT+R R LL+AG + R   G L KR+ FG L G    G+G  E+ W   ++ D++ F+      T       +   +W E             V +G  RFMA+W K + +A+R R  KR
Sbjct: 1061 VRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1377          
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 2.870e-64
Identity = 132/317 (41.64%), Postives = 185/317 (58.36%), Query Frame = 1
Query:   25 VRRAVWDMLYADGACIISRSTQGLAKMMKVTVEVCRSFALTASTKKTETMCMPPPRTPRT------MVRFEVAGKSYRQVQTFTYLGGAVAETPDMSVEIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTWTLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEATLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQSDIRAFDI-----TGNWKAIALKAEIWGEI------------VAEGGRRFMAAWRKEELDAARLRQKKR 906
            VRRAVW MLYAD A ++S+S  GLA+MM + VEV R F LT S +KTET+ M      R       ++  E AG+ Y Q   F YLGG V E  D++ EI  R++A  + I+RY  EL+D+P     LK R++++EA+EALLYGC TW+ R+N Y   +T HHR+LLR IG +RKR  +R +SY +A++   C+S+EAT+R R LL+AG + R   G L KR+ FG L G    G+G  E+ W   ++ D++ F+      T       +   +W E             V +G  RFMA+W K + +A+R R  KR
Sbjct: 1265 VRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1581          
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 4.580e-64
Identity = 136/326 (41.72%), Postives = 186/326 (57.06%), Query Frame = 1
Query:   25 VRRAVWDMLYADGACIISRSTQGLAKMMKVTVEVCRSFALTASTKKTETMCMPPPRTPRTM--------VRFEVAGKSYRQVQTFTYLGGAVAETPDMSVEIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTWTLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEATLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQSDIRAFDIT-GNWKAI--------------------ALKAE---IWGEIVAEGGRRFMAAWRKEELDAARLRQKKR 906
            VRRAVW M YAD A ++SRS +GLA+MM + VEV   F LT S KKTET+ M     P T+        +  + AG+ Y Q   F YLGG V E  D++ EI  R+R   + +RRY  EL+D+P+    LKIR++++EA+EALLYGC TW+     Y   R++HHR+LLR IG +RK+  +R +SY + ++   C+S+EAT+R R LL+AG L R   G L KR+ FG L G  +R RGG+E+ W   V  D+ AF    G+ K                      A K E    W   V +G  RFM +W ++E +A+R R  KR
Sbjct:  346 VRRAVWGMSYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTISQTAPPPPLTIKAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 671          
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 4.690e-63
Identity = 121/262 (46.18%), Postives = 160/262 (61.07%), Query Frame = 1
Query:   25 VRRAVWDMLYADGACIISRSTQGLAKMMKVTVEVCRSFALTASTKKTETMCM--------------PPPRTPRTMVRFEVAGKSYRQVQTFTYLGGAVAETPDMSVEIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTWTLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEATLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQSDIRAF 768
            VRRAVW MLYAD A ++SRS +GLA+MM + VEV   F LT S KKTET+ M              PPP T       E AG+ Y Q   F Y GG V +  D++ EI  R+R   + +RRY  EL+D+PK    LKIR++++EA+EALLYGC TW+     Y   R++HHR+L R IG + K+  +R +SY R +E   C+S+EAT+R R LL+AG L R   G L KR+ FG L G  +R RGG+E+ W   V  D++AF
Sbjct:  257 VRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPATTSQPASPPPLT------IEAAGQEYAQTTEFQYPGGLVNDHGDLTREINCRSRGAWACLRRYGRELFDRPKAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAF 512          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11.813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA81_9PHAE3.040e-6742.59Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ91_9PHAE2.950e-6642.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE2.750e-6541.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWS4_9PHAE8.040e-6540.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE9.210e-6541.32Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLC4_9PHAE2.510e-6440.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE2.770e-6441.64Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE2.870e-6441.64Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE4.580e-6441.72Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLT1_9PHAE4.690e-6346.18Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11contigH-elongata_contig11:40055..40981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score104.0
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog13735.ENSPSIP00000001008
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,49BMJ@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size927
Cds size927
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.8088975-CDS-H-elongata_contig11:40054..409811622929626.8088975-CDS-H-elongata_contig11:40054..40981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11 40055..40981 +
1691679096.8220146-CDS-H-elongata_contig11:40054..409811691679096.8220146-CDS-H-elongata_contig11:40054..40981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11 40055..40981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11.813.1prot_H-elongata_contig11.813.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11 40055..40981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11.813.1

>prot_H-elongata_contig11.813.1 ID=prot_H-elongata_contig11.813.1|Name=mRNA_H-elongata_contig11.813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
RRSSRTSLVRRAVWDMLYADGACIISRSTQGLAKMMKVTVEVCRSFALTA
STKKTETMCMPPPRTPRTMVRFEVAGKSYRQVQTFTYLGGAVAETPDMSV
EIARRTRACSSRIRRYLCELYDQPKVALSLKIRMVKSEAIEALLYGCSTW
TLRKNDYAKPRTVHHRVLLRTIGTQRKRPDHRMISYNRAVEITRCESIEA
TLRTRTLLWAGTLIRMSGGWLSKRIAFGNLEGAVRRGRGGKEKEWTDYVQ
SDIRAFDITGNWKAIALKAEIWGEIVAEGGRRFMAAWRKEELDAARLRQK
KREATELGK
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mRNA from alignment at H-elongata_contig11:40055..40981+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11.813.1 ID=mRNA_H-elongata_contig11.813.1|Name=mRNA_H-elongata_contig11.813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=927bp|location=Sequence derived from alignment at H-elongata_contig11:40055..40981+ (Himanthalia elongata Himel1 dioecious)
CGGCGTAGTTCTCGAACCTCTCTCGTTCGTCGTGCGGTATGGGACATGCT GTACGCGGATGGCGCTTGCATAATTTCGCGATCGACGCAGGGGCTCGCTA AAATGATGAAAGTTACCGTTGAAGTTTGCCGATCCTTCGCGTTAACCGCG TCGACGAAGAAGACAGAGACCATGTGCATGCCCCCACCGCGTACACCACG GACGATGGTGCGATTCGAAGTAGCAGGGAAATCATACAGACAAGTGCAAA CCTTTACCTACCTGGGGGGCGCCGTGGCCGAAACCCCGGACATGTCTGTT GAAATCGCCAGGCGGACCCGCGCATGTTCGAGTCGCATCAGGCGATACCT ATGTGAGCTCTACGACCAACCGAAAGTAGCGCTCTCCCTCAAGATCAGAA TGGTAAAGTCTGAGGCAATCGAGGCCCTCCTGTATGGATGCAGTACGTGG ACCCTCCGCAAAAACGACTACGCCAAACCCCGCACCGTACACCACCGGGT CTTGCTTCGCACCATCGGGACACAGCGCAAGAGACCAGACCACCGGATGA TCTCGTACAACCGCGCCGTTGAGATAACCCGTTGCGAGAGCATTGAGGCA ACGTTGCGCACGAGAACACTTTTGTGGGCAGGAACGCTCATCCGAATGAG CGGCGGGTGGTTGTCAAAGCGAATCGCCTTCGGAAACCTTGAGGGTGCAG TACGGAGAGGACGGGGTGGAAAGGAGAAAGAGTGGACTGACTATGTACAG AGTGATATCCGGGCGTTTGACATTACGGGGAACTGGAAAGCAATTGCGTT GAAGGCTGAGATTTGGGGTGAGATAGTCGCGGAGGGTGGGCGGAGGTTCA TGGCCGCGTGGAGAAAAGAAGAGTTAGACGCGGCTAGACTTCGCCAGAAG AAGAGAGAGGCAACGGAACTGGGAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig11:40055..40981+

>mRNA_H-elongata_contig11.813.1 ID=mRNA_H-elongata_contig11.813.1|Name=mRNA_H-elongata_contig11.813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1854bp|location=Sequence derived from alignment at H-elongata_contig11:40055..40981+ (Himanthalia elongata Himel1 dioecious)
CGGCGTAGTTCTCGAACCTCTCTCGTTCGTCGTGCGGTATGGGACATGCT
GTACGCGGATGGCGCTTGCATAATTTCGCGATCGACGCAGGGGCTCGCTA
AAATGATGAAAGTTACCGTTGAAGTTTGCCGATCCTTCGCGTTAACCGCG
TCGACGAAGAAGACAGAGACCATGTGCATGCCCCCACCGCGTACACCACG
GACGATGGTGCGATTCGAAGTAGCAGGGAAATCATACAGACAAGTGCAAA
CCTTTACCTACCTGGGGGGCGCCGTGGCCGAAACCCCGGACATGTCTGTT
GAAATCGCCAGGCGGACCCGCGCATGTTCGAGTCGCATCAGGCGATACCT
ATGTGAGCTCTACGACCAACCGAAAGTAGCGCTCTCCCTCAAGATCAGAA
TGGTAAAGTCTGAGGCAATCGAGGCCCTCCTGTATGGATGCAGTACGTGG
ACCCTCCGCAAAAACGACTACGCCAAACCCCGCACCGTACACCACCGGGT
CTTGCTTCGCACCATCGGGACACAGCGCAAGAGACCAGACCACCGGATGA
TCTCGTACAACCGCGCCGTTGAGATAACCCGTTGCGAGAGCATTGAGGCA
ACGTTGCGCACGAGAACACTTTTGTGGGCAGGAACGCTCATCCGAATGAG
CGGCGGGTGGTTGTCAAAGCGAATCGCCTTCGGAAACCTTGAGGGTGCAG
TACGGAGAGGACGGGGTGGAAAGGAGAAAGAGTGGACTGACTATGTACAG
AGTGATATCCGGGCGTTTGACATTACGGGGAACTGGAAAGCAATTGCGTT
GAAGGCTGAGATTTGGGGTGAGATAGTCGCGGAGGGTGGGCGGAGGTTCA
TGGCCGCGTGGAGAAAAGAAGAGTTAGACGCGGCTAGACTTCGCCAGAAG
AAGAGAGAGGCAACGGAACTGGGAAAGCGGCGTAGTTCTCGAACCTCTCT
CGTTCGTCGTGCGGTATGGGACATGCTGTACGCGGATGGCGCTTGCATAA
TTTCGCGATCGACGCAGGGGCTCGCTAAAATGATGAAAGTTACCGTTGAA
GTTTGCCGATCCTTCGCGTTAACCGCGTCGACGAAGAAGACAGAGACCAT
GTGCATGCCCCCACCGCGTACACCACGGACGATGGTGCGATTCGAAGTAG
CAGGGAAATCATACAGACAAGTGCAAACCTTTACCTACCTGGGGGGCGCC
GTGGCCGAAACCCCGGACATGTCTGTTGAAATCGCCAGGCGGACCCGCGC
ATGTTCGAGTCGCATCAGGCGATACCTATGTGAGCTCTACGACCAACCGA
AAGTAGCGCTCTCCCTCAAGATCAGAATGGTAAAGTCTGAGGCAATCGAG
GCCCTCCTGTATGGATGCAGTACGTGGACCCTCCGCAAAAACGACTACGC
CAAACCCCGCACCGTACACCACCGGGTCTTGCTTCGCACCATCGGGACAC
AGCGCAAGAGACCAGACCACCGGATGATCTCGTACAACCGCGCCGTTGAG
ATAACCCGTTGCGAGAGCATTGAGGCAACGTTGCGCACGAGAACACTTTT
GTGGGCAGGAACGCTCATCCGAATGAGCGGCGGGTGGTTGTCAAAGCGAA
TCGCCTTCGGAAACCTTGAGGGTGCAGTACGGAGAGGACGGGGTGGAAAG
GAGAAAGAGTGGACTGACTATGTACAGAGTGATATCCGGGCGTTTGACAT
TACGGGGAACTGGAAAGCAATTGCGTTGAAGGCTGAGATTTGGGGTGAGA
TAGTCGCGGAGGGTGGGCGGAGGTTCATGGCCGCGTGGAGAAAAGAAGAG
TTAGACGCGGCTAGACTTCGCCAGAAGAAGAGAGAGGCAACGGAACTGGG
AAAG
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