mRNA_H-elongata_contig109270.751.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109270.751.1
Unique NamemRNA_H-elongata_contig109270.751.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109270.751.1 vs. uniprot
Match: D7FH38_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 4.380e-5
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:  253 QADFEAHTGDHGSTPLHVAAISGFDEVI 336
            +AD+EA T DHGSTPLHVAAISGFDEV+
Sbjct:  281 RADYEAVTEDHGSTPLHVAAISGFDEVL 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109270.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH38_ECTSI4.380e-582.14Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109270contigH-elongata_contig109270:14..2092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109270.751.1prot_H-elongata_contig109270.751.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109270 35..2092 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.136394-UTR-H-elongata_contig109270:13..341622929620.136394-UTR-H-elongata_contig109270:13..34Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109270 14..34 +
1691679094.0280244-UTR-H-elongata_contig109270:13..341691679094.0280244-UTR-H-elongata_contig109270:13..34Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109270 14..34 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.1530247-CDS-H-elongata_contig109270:34..1391622929620.1530247-CDS-H-elongata_contig109270:34..139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109270 35..139 +
1691679094.0361972-CDS-H-elongata_contig109270:34..1391691679094.0361972-CDS-H-elongata_contig109270:34..139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109270 35..139 +
1622929620.1693041-CDS-H-elongata_contig109270:1882..20921622929620.1693041-CDS-H-elongata_contig109270:1882..2092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109270 1883..2092 +
1691679094.044924-CDS-H-elongata_contig109270:1882..20921691679094.044924-CDS-H-elongata_contig109270:1882..2092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109270 1883..2092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109270.751.1

>prot_H-elongata_contig109270.751.1 ID=prot_H-elongata_contig109270.751.1|Name=mRNA_H-elongata_contig109270.751.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MGAVRELLEAVANPNAQDAEGCTPVFLAAQEGHEEVVVDLLRNGASPDIC
REDGWTPLHAAARFGHTSTVMALLREGQADFEAHTGDHGSTPLHVAAISG
FDEVI
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mRNA from alignment at H-elongata_contig109270:14..2092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109270.751.1 ID=mRNA_H-elongata_contig109270.751.1|Name=mRNA_H-elongata_contig109270.751.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2079bp|location=Sequence derived from alignment at H-elongata_contig109270:14..2092+ (Himanthalia elongata Himel1 dioecious)
CAGGCATCGTTCTTCGGACAAATGGGCGCGGTTCGAGAGCTCCTAGAGGC
GGTCGCCAACCCAAATGCGCAAGATGCCGAGGGCTGCACGCCGGTTTTCC
TCGCCGCCCAGGAGGGTCACGAAGAGGTGCAGTACCTTTTTGTTTTTGTT
GTTGCTGTTGGTAGGTCTGTCTCTCTACCCCGGAATGAACCCCCTTCAAG
TGTTTCCCTTCAAAATGAGAAACATGTCATTCCCCCGGCCTTCTCGAGAG
GGTGATGACGTCATGACAGTCTGCCGTCTGGTATAATCAGGAGCACCTTC
CCTCCGCCCTTGGACAAGTTGATCCGATGAATTTACTATTGGAGAACACG
AATTATGACATGTGATGATTTTGTGCTCAAAGGAGTAATGTAACATTCGA
ACCTGACGTTCCCCTAGATGTTCGGAGGGTTGGAATGAGTTCATGTTTTT
TTTTAACTCGCCACAAAAAGGTATTTGTTCATCTCACCCAATATATATAT
ATGTGTGTGTGTGTGTATTTATTAAATTGCACATAACCGTGCAATCCGGC
CCTGTCATCCTAGTCCTTCTAGGCTACTCTCGTTTTGTATTGATCCCCCC
AATGGGGAATCAATCATACTTGCGTGTGTGTGTTCGCGCCCCCCTTCTTT
TGACTTAATCGTGAGTGTTTTCTTCTTTTCCCACTCCAACCTGATGCGGA
ATTTCAGCCGAAGTCACTGTAGAGAAGGTGTGGGTATTTTTAAGAGAAGC
AAGATCATTCGGATATGTTTCTTAAGAAAAATAACCTTTCGGCTGTTTTA
CTCGTGAAAAGTGCTCTAGAAACGGGGTAAAAATAAATTACTAATAATAG
TGTTTGGCTAGTTTAGTTTATAGAAACAGAAATAACTCTTTTCTTTTTCG
TAACAACTGTGTAGGAAATGCCGGAATCGTGGCAAATTCGCTTGAAAATT
TAGACCAACTCGAGGCCTCCGAAACGCCGGAGATACGACTCAAGGACCAC
CAAAAAGCTATAAAAGCGTGTTTGTTGAACTCGATACTAGAAAACGCCCC
TGTGAACCTCATATATTTCCACCAAAACGATCTGCAAATAAATGTTGATC
GCAATGAATCAATAAATATACCCCAGTGGATCGGTTGGTAACCTCGAAAC
CGTCTGATGTTGAGACGTGAGTTCGAATCTCGACACATTCACACGAACTG
TTTTTTTTGTTTTTTTTTACATCATGCCCAGTCAGTGGAGAACGAATATT
TGGTGAGTACACAAAATTCGACATAATTCGACAAAATTTGACATACTATT
CACGGTCGACGAAAGAAAAGAACAGCTAAAAATCAAGATTAGCACCGCAG
AAGGAAGGTGGAGAGATCCAGTGTGGCCTTTCTCCTGTGTGACCCTACCC
TACCCTACCCTACCCTACCCCGACTGAGGCTTCCACAAGTCCAACTTCCA
GAATAAAATGGGATGATAACACACAACACACACTAGAGAGCAACACGGAG
TTTTTTGGAGGTGCCAATTTTTAGAGATAATGCGTGCAATAGCGGATTAT
GTTTTTCCTTCCGGATGATGTTTTTCTACTTTTATACGTACTTTGTGAAA
ACGGACTGGACTTTGGCATCATTTTATTATCTGATAATTCAAAATCAATC
CTTCATTTGTTTGAACCTGACGATAGTTGGTCCCCTGAGCTGCATCTCTC
ACGGCGCTAAGAAGGTGTGGATGTTCGGAGGGTTGGAATGAGTTCAACGT
TTTTTTTAATAAAAATAGTAGGGGTTTTGGTAAAAAAAACAACAAAAAAA
TGCCCGGGTTCGAGTATTTTTTCATATGCATGTCTCTGTCTGTCTGTCTC
TCTCTCATCACCTTGGTAGGTTGTGGTAGACCTCCTCCGCAACGGAGCCT
CCCCCGACATCTGCCGCGAGGACGGGTGGACCCCCCTGCATGCCGCGGCT
CGTTTTGGTCACACCTCCACGGTAATGGCGCTCCTTCGAGAGGGGCAGGC
AGACTTCGAGGCCCACACAGGAGATCACGGGTCCACCCCTCTGCACGTGG
CAGCCATCAGCGGCTTCGATGAGGTGATT
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Coding sequence (CDS) from alignment at H-elongata_contig109270:14..2092+

>mRNA_H-elongata_contig109270.751.1 ID=mRNA_H-elongata_contig109270.751.1|Name=mRNA_H-elongata_contig109270.751.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig109270:14..2092+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGCGGTTCGAGAGCTCCTAGAGGCGGTCGCCAACCCAAATGCGCA
AGATGCCGAGGGCTGCACGCCGGTTTTCCTCGCCGCCCAGGAGGGTCACG
AAGAGATGGGCGCGGTTCGAGAGCTCCTAGAGGCGGTCGCCAACCCAAAT
GCGCAAGATGCCGAGGGCTGCACGCCGGTTTTCCTCGCCGCCCAGGAGGG
TCACGAAGAGGTTGTGGTAGACCTCCTCCGCAACGGAGCCTCCCCCGACA
TCTGCCGCGAGGACGGGTGGACCCCCCTGCATGCCGCGGCTCGTTTTGGT
CACACCTCCACGGTAATGGCGCTCCTTCGAGAGGGGCAGGCAGACTTCGA
GGCCCACACAGGAGATCACGGGTCCACCCCTCTGCACGTGGCAGCCATCA
GCGGCTTCGATGAGGTGATTGTTGTGGTAGACCTCCTCCGCAACGGAGCC
TCCCCCGACATCTGCCGCGAGGACGGGTGGACCCCCCTGCATGCCGCGGC
TCGTTTTGGTCACACCTCCACGGTAATGGCGCTCCTTCGAGAGGGGCAGG
CAGACTTCGAGGCCCACACAGGAGATCACGGGTCCACCCCTCTGCACGTG
GCAGCCATCAGCGGCTTCGATGAGGTGATT
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