mRNA_H-elongata_contig109260.750.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109260.750.1
Unique NamemRNA_H-elongata_contig109260.750.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Match: A0A6H5L0C8_9PHAE (Alanine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C8_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.000e-45
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 LQQFKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKEEAIGWAWDCLTNVSPTEHTNLY 267
            + QFKPLFLGTADPAL LSKLTR  NSQKCIRAGGKHNDLDDVGKD+YHHTFFEMLGNWSFGSYFKEEAIG+AW+CLT V   + + LY
Sbjct:    1 MNQFKPLFLGTADPALPLSKLTRATNSQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNWSFGSYFKEEAIGYAWECLTTVYKLDPSRLY 89
[Close]
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Match: D7FPP9_ECTSI (Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP9_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 3.600e-45
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 LQQFKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKEEAIGWAWDCLTNVSPTEHTNLY 267
            + QFKPLFLGTADPAL LSKLTR  NSQKCIRAGGKHNDLDDVGKD+YHHTFFEMLGNWSFGSYFKEEAIG+AW+CLT V   + + LY
Sbjct:   73 MNQFKPLFLGTADPALPLSKLTRATNSQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNWSFGSYFKEEAIGYAWECLTTVYKLDPSRLY 161
[Close]
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Match: A0A834SDI7_9FABA (Alanine--tRNA ligase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SDI7_9FABA)

HSP 1 Score: 155 bits (393), Expect = 1.760e-44
Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 LQQFKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKEEAIGWAWDCLTNVS--PTEH 255
            + QFKP+FLGT DP  GLSKLTR  N+QKCIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFG YFKEEAIGWAW+ LT V   PT H
Sbjct:  140 MNQFKPIFLGTVDPNTGLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTKVYKLPTNH 226
[Close]
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Match: A0A7S2Y168_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y168_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.850e-44
Identity = 68/89 (76.40%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 LQQFKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKEEAIGWAWDCLTNVSPTEHTNLY 267
            + Q+KPLFLGT DP L +SKLTR  NSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG YFKE+AI WAW+CLT V   + + LY
Sbjct:   94 MNQYKPLFLGTCDPKLPMSKLTRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEQAITWAWECLTEVFGLDESRLY 182
[Close]
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Match: A0A0D2ZWB7_BRAOL (Alanine--tRNA ligase n=2 Tax=Brassica TaxID=3705 RepID=A0A0D2ZWB7_BRAOL)

HSP 1 Score: 148 bits (373), Expect = 1.140e-43
Identity = 64/81 (79.01%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 LQQFKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKEEAIGWAWDCLTNVS 243
            + Q+KP+FLGTADP   LSKLTR  N+QKCIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFG YFK+EAI WAW+ LT VS
Sbjct:   94 MNQYKPIFLGTADPNTELSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVS 174
[Close]
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Match: A0A2P5AYY8_PARAD (Alanine--tRNA ligase n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5AYY8_PARAD)

HSP 1 Score: 149 bits (375), Expect = 1.370e-43
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 LQQFKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKEEAIGWAWDCLTNVSPTEHTNLY 267
            + QFKP+FLG  DP   LSKLTR  N+QKCIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFG YFK+EAIGWAW+ LT  S +   + Y
Sbjct:  112 MNQFKPIFLGQVDPNTALSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKASASALLSTY 200
[Close]
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Match: UPI00053A6D95 (alanine--tRNA ligase-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A6D95)

HSP 1 Score: 144 bits (364), Expect = 2.390e-43
Identity = 62/77 (80.52%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:   10 FKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKEEAIGWAWDCLTNV 240
            +KP+FLGTADP   LSKLTR  N+Q CIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFG YFK EAIGWAW+ LT V
Sbjct:   18 YKPIFLGTADPNTELSKLTRACNTQNCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIGWAWELLTKV 94
[Close]
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Match: A0A7S1TRR3_9STRA (Alanine--tRNA ligase (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRR3_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.860e-43
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:    1 LQQFKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKEEAIGWAWDCLTN 237
            + Q+KPLFLGT DP+L ++KLTR  NSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFK EA+ W+W+CLT+
Sbjct:   86 MNQYKPLFLGTCDPSLDMAKLTRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKAEAVAWSWECLTS 164
[Close]
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Match: A0A1S4DWP3_CUCME (Alanine--tRNA ligase n=1 Tax=Cucumis melo TaxID=3656 RepID=A0A1S4DWP3_CUCME)

HSP 1 Score: 144 bits (364), Expect = 8.390e-43
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    1 LQQFKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKEEAIGWAWDCLTNVSPTEHTNLY 267
            + QFKP+FLGT DP   LSKLTR  N+QKCI AGG+HNDLDDVGKD YHHTFFEMLGNWSFG YFK+EAI WAW+ LT V       +Y
Sbjct:    1 MNQFKPIFLGTVDPNTSLSKLTRACNTQKCIHAGGRHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAITWAWELLTQVYKLPTDRIY 89
[Close]
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Match: A0A2K3MH11_TRIPR (Alanine--tRNA ligase n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MH11_TRIPR)

HSP 1 Score: 145 bits (366), Expect = 2.240e-42
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 LQQFKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGSYFKEEAIGWAWDCLT 234
            + Q+KP+FLGTADP   LSKL+R  N+QKCIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFG YFKEEAI WAW+ LT
Sbjct:   96 MNQYKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAITWAWELLT 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109260.750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0C8_9PHAE2.000e-4582.02Alanine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FPP9_ECTSI3.600e-4582.02Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosu... [more]
A0A834SDI7_9FABA1.760e-4479.31Alanine--tRNA ligase n=1 Tax=Senna tora TaxID=3627... [more]
A0A7S2Y168_9STRA3.850e-4476.40Alanine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0D2ZWB7_BRAOL1.140e-4379.01Alanine--tRNA ligase n=2 Tax=Brassica TaxID=3705 R... [more]
A0A2P5AYY8_PARAD1.370e-4371.91Alanine--tRNA ligase n=1 Tax=Parasponia andersonii... [more]
UPI00053A6D952.390e-4380.52alanine--tRNA ligase-like n=1 Tax=Camelina sativa ... [more]
A0A7S1TRR3_9STRA4.860e-4379.75Alanine--tRNA ligase (Fragment) n=2 Tax=Phaeomonas... [more]
A0A1S4DWP3_CUCME8.390e-4369.66Alanine--tRNA ligase n=1 Tax=Cucumis melo TaxID=36... [more]
A0A2K3MH11_TRIPR2.240e-4279.49Alanine--tRNA ligase n=1 Tax=Trifolium pratense Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109260contigH-elongata_contig109260:1225..1774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score153.3
Seed ortholog evalue5.3e-35
Seed eggNOG ortholog28583.AMAG_00498T0
Preferred nameALA1
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000049,GO:0000959,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0032543,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070127,GO:0070143,GO:0071704,GO:0090304,GO:0097159,GO:0140053,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990762
EggNOG free text desc.Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain
EggNOG OGs38GHT@33154,3NUR8@4751,COG0013@1,KOG0188@2759
EC6.1.1.7
COG Functional cat.J
BiGG ReactioniMM904.YOR335C,iND750.YOR335C
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.0776694-CDS-H-elongata_contig109260:1224..13151622929620.0776694-CDS-H-elongata_contig109260:1224..1315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109260 1225..1315 -
1691679094.006099-CDS-H-elongata_contig109260:1224..13151691679094.006099-CDS-H-elongata_contig109260:1224..1315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109260 1225..1315 -
1622929620.0929236-CDS-H-elongata_contig109260:1598..17741622929620.0929236-CDS-H-elongata_contig109260:1598..1774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109260 1599..1774 -
1691679094.0192304-CDS-H-elongata_contig109260:1598..17741691679094.0192304-CDS-H-elongata_contig109260:1598..1774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109260 1599..1774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109260.750.1prot_H-elongata_contig109260.750.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109260 1225..1774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109260.750.1

>prot_H-elongata_contig109260.750.1 ID=prot_H-elongata_contig109260.750.1|Name=mRNA_H-elongata_contig109260.750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
LQQFKPLFLGTADPALGLSKLTRVANSQKCIRAGGKHNDLDDVGKDVYHH
TFFEMLGNWSFGSYFKEEAIGWAWDCLTNVSPTEHTNLY
back to top

mRNA from alignment at H-elongata_contig109260:1225..1774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109260.750.1 ID=mRNA_H-elongata_contig109260.750.1|Name=mRNA_H-elongata_contig109260.750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=550bp|location=Sequence derived from alignment at H-elongata_contig109260:1225..1774- (Himanthalia elongata Himel1 dioecious)
TTACAACAGTTCAAGCCGCTGTTTTTAGGCACGGCAGACCCTGCCTTGGG
ACTGTCAAAGCTCACTCGGGTGGCTAACTCCCAAAAGTGCATCCGAGCCG
GTGGCAAGCATAATGACCTCGACGACGTCGGAAAGGACGTGTACCATCAC
ACGTTCTTCGAGATGCTTGGAAACTGGTCGGTCGATTGTGATTGGTTGGT
TGATGAAGACTCATGATTGATTTGATGATGAGAGACTCAAGAGTGCGGGG
GACTCGTTTGTTATTGAATGATAGTAGTGATGTTAGTGCGTTTCTCATTT
GGGCAGTATTAATGACTATTAGTACTACTATTACTTACCGTATTCGTTTA
GTCGTTAACATCTTACGAGAATGTTGCTGTAAGATGCGATATCCTTCAAA
GACTCTCCTCGTTCAAAGTTATTTTACGCACGCCAGAAATGGTTGCTTCA
AACCAACAGGTCGTTCGGAAGCTACTTCAAGGAAGAAGCCATCGGGTGGG
CATGGGACTGCTTGACCAATGTGAGCCCTACAGAACATACTAACTTATAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig109260:1225..1774-

>mRNA_H-elongata_contig109260.750.1 ID=mRNA_H-elongata_contig109260.750.1|Name=mRNA_H-elongata_contig109260.750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig109260:1225..1774- (Himanthalia elongata Himel1 dioecious)
TTACAACAGTTCAAGCCGCTGTTTTTAGGCACGGCAGACCCTGCCTTGGG
ACTGTCAAAGCTCACTCGGGTGGCTAACTCCCAAAAGTGCATCCGAGCCG
GTGGCAAGCATAATGACCTCGACGACGTCGGAAAGGACGTGTACCATCAC
ACGTTCTTCGAGATGCTTGGAAACTGTTACAACAGTTCAAGCCGCTGTTT
TTAGGCACGGCAGACCCTGCCTTGGGACTGTCAAAGCTCACTCGGGTGGC
TAACTCCCAAAAGTGCATCCGAGCCGGTGGCAAGCATAATGACCTCGACG
ACGTCGGAAAGGACGTGTACCATCACACGTTCTTCGAGATGCTTGGAAAC
TGGTCGTTCGGAAGCTACTTCAAGGAAGAAGCCATCGGGTGGGCATGGGA
CTGCTTGACCAATGTGAGCCCTACAGAACATACTAACTTATATGTCGTTC
GGAAGCTACTTCAAGGAAGAAGCCATCGGGTGGGCATGGGACTGCTTGAC
CAATGTGAGCCCTACAGAACATACTAACTTATAT
back to top