mRNA_H-elongata_contig10909.734.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10909.734.1
Unique NamemRNA_H-elongata_contig10909.734.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 366 bits (939), Expect = 2.740e-104
Identity = 263/772 (34.07%), Postives = 385/772 (49.87%), Query Frame = 2
Query:  299 LSFLLACGAKVTTGADGHVDDISDSLGLVELKKCFRQAISAVENPFIPGMMLSLALVIEAPTAKADERRKLTELREMVEELLLEVLERMPQTVLGFPGGAAACSLLFEPENTGTRSESFKGPLKTAFSKHHLITTFCTQPLIVDFISHTFGAGLLNLRSRIPSVAAGML--KKVDPAVVVRDPLAAD---------LQR-------NRTTLFPGAQFIFVGIVAMPFTYYRVPLLRMWLDLAVFVIFLAVYTIVVANMYDKSSANAPEIALGFYVIAAIMAEAGAVGRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLLGAPLLFPRILFFAQIHPSQGALLQ-----------FSIIMIVVMMGFVVSFWASSERYRIVNEDESATFDLMWVAVFKAMLGDFGDVESLTEEP-DWVDRLLFVFYLIVMTIMLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLNLLQLLALFPILVIDLCIH---------------------------------RGLYDRLKPTIAR-IMGSFVFWATLSPVAIALSSLLWFVSTPTIIISRWDQNA--SLWGNVSRSVAAVFESLIAVPLTLFWLWALGVVNGARQIV------------DLAQGRRLEIPTSVSFLSNMPQVPTTVGE-----------ILMTE--GRLSVHELSACLEDPMSDPEVRRDEENRPTTVQHIKLLRNRLEATRADHLVDIMAHIESAANAREGRLE 2341
            L++LL  GAK T      +  +S+ +    LK+    AIS+  NPFIPGM LS+A       A   E+R+L  ++  V+ELLLEVLE MPQTV GF G    CS +FEPE   +R   ++GPL    SK   + T+CT PL++DF++  F  GL +LR        G+L   K     +    L A+         LQR       +  T FPGA+FI  G ++ P +YY+VP LRM LDL  ++  + ++   V       +++  EI    Y+   I+ E   +     EY+RD WN LDV ++ LL  G + R++    G   ++   A Y L APL F RILFFAQI PSQG ++Q           F +IM++VM+GFV SF++    Y+     E+  +  +W A+F+A LG+   ++  +    D V  +L V YL+++TIM+LNLL+A+LSTAHA ++  A  E K ++ R ++HY  VV  + LP P NL Q +   P +V+DLC                                   +   DR    +AR   G   FWA L P+A+    +LW +S     +  W  +   SL G ++R +  +F   +  P     +W  G V G R+ +                 +R +  T+ + ++      T V E           I++ E  G L+  EL   L+DPMSDP+VRRDEE R TTV+HIKLLRNRLEAT  +H+  + A++   A     +LE
Sbjct:  899 LAYLLQQGAKPTNKG---LLRLSNLVKFPRLKESLLGAISSANNPFIPGMNLSVACTTATRRAMEGEKRRLASMQAAVDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETVISRFHGYQGPLHVVLSKREQMETYCTIPLVLDFMTRKFTKGLPSLRD-----TEGVLLSNKGFTQTLYGGGLLAEGKVFFFGMALQRGYAGGALSSITYFPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWLEIVFTMYIFGGILTEFREILEDPWEYMRDQWNLLDVTSLTLLLGGAIQRMY----GQVDDESSRALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYS---LYK-----ETTAYGEVWKAIFRATLGETDYLDDFSGTTFDGVATVLLVVYLVLLTIMMLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWIFALPFMVLDLCFRTSRRPSTASTNSAXXXXXXXXXXXXXXSINGNEKTKRDRSYFKVARGFFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQTSGDKSLGGRIARMLLVIFVCAVGAPFWHLVMWVRGGVAGVRRTMRALGCXXXXXXXXXXXXKRGDGRTTTASITARGSPATIVAEGAEDDMEKVVPIVLQEADGALTTSELQIFLDDPMSDPDVRRDEETRATTVEHIKLLRNRLEATTKEHMNGLQAYLLKTAGDISRQLE 1650          
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 2.800e-94
Identity = 246/719 (34.21%), Postives = 347/719 (48.26%), Query Frame = 2
Query:  389 LKKCFRQAISAVENPFIPGMMLSLALVIEAPTAKADERRKLTELREMVEELLLEVLERMPQTVLGFPGGAAACSLLFEPENTGTRSESFKGPLKTAFSKHHLITTFCTQPLIVDFISHTFGAGLLNLRS---------RIPSVAAG-----------------------------------------------MLKKVD----PAVVVRDPLAADLQRNRTTL--FPGAQFIFVGIVAMPFTYYRVPLLRMWLDLAVFVIFLAVYTIVVANMYDKSSANAPEIALGFYVIAAIMAEAGAVGRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLLGAPLLFPRILFFAQIHPSQGALLQ-----------FSIIMIVVMMGFVVSFWASSERYRIVNEDESATFDLMWVAVFKAMLGD---FGDVESLTEEPDWVDRLLFVFYLIVMTIMLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLNLLQLLALFPILVIDLCIHRGLYDRLKPTIARIMGSFVFWATLSPVAIALSSLLWFVST---PTIIISRWDQNA-------SLWGNVSRSVAAVFESLIAVPLTLFWLWALGVVNGARQIVDLAQGRRLEIPTSVSFLSNMPQVPTTVGEILM-TEGRLSVHELSACLEDPMSDPEVRRDEENRPTTVQHIKLLRNRLEATRADHL 2284
            L+ CF + ++  +NPF+PGM LS+A    A  A   ERRKL  L+E V+ LLLE+LER+PQTV GF GG   CS +FEPE +   +    GPL+ A  +   + TFCTQPL+ DF+S  F  GL  LR           + ++A G                                                 K +D    P ++++    A L     +L   PGAQF   G+V MP  YYRVP +RM LDLAV++  L  ++ VV   ++       E A  FY++A I+ E   + R    Y  D WN LD+  + L++ G +VR       +     G A Y L APL+F R+LFFAQ+    G ++Q           F +++IVVM+GF +SF A           +  TF    + +FKAMLG+   FG       + D V   LFV YL+V+ +MLLNLLIA+LST+H+ +E +A+ E K SK R +EHYR VV   +LP P NL+QL+   P++V D    R             +G   FW  L PVA A  ++LW +S+   P +  + +   A       S+   + R +   F  ++  PL L   W    +   +         R + P   S+       P +V ++L    G L   +L   LEDP+ DPEVR DE  + TTV++IK LRNRLE T   HL
Sbjct:  561 LRTCFLETVACSDNPFVPGMTLSIAFAKSASVAPEGERRKLLSLQERVDTLLLEILERLPQTVQGFDGGMTGCSAVFEPELSREDARGLPGPLRLALQERQHVQTFCTQPLLTDFLSRRFTYGLPGLRDTQNILGDRRELTNLARGGPGELMSGQKYLALDEEGRRKEDGRSLDRCLLLDLQDKIGQEGKLLDSRKIIDTLLSPCILLQGANCAGLWNTAVSLTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVL-FHEDGPLTPGEAAFAFYILAGIITEGQEMRRDFGLYAADHWNILDLLGLGLVTGGLIVRC-----ADGDNSWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALF--------GDVDTFGGTCLTLFKAMLGEVDFFGSFPG--NQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMVRD----RSGQGTASTRAQEAVGRMAFWLALGPVAAACGTVLWVLSSLFAPFVWHTHFYSKAQARRGALSVGSLLVRYLIVFFWCVLGAPLYLMAFWLTAPMKWLKLRPWCWVWDRRQAPYIASWN------PKSVNDLLEGNSGGLVAGDLQMYLEDPIGDPEVRPDERRKQTTVENIKQLRNRLEKTILTHL 1253          
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 2.030e-85
Identity = 251/782 (32.10%), Postives = 363/782 (46.42%), Query Frame = 2
Query:  170 ALSTVLSMDQMADISTACLETELDGMDKTSTLRDLLQDFWPGRLSFLLACGAKVTTGADGHVDDISDSLGLVELKKCFRQAISAVENPFIPGMMLSLALVIEAPTAKADERRKLTELREMVEELLLEVLERMPQTVLGFPGGAAACSLLFEPENTGTRSESFKGPLKTAFSKHHLITTFCTQPLIVDFISHTFGAGLLNLRSRIPSVAAGMLKKVDPA-VVVRDPLAAD---------LQRNRT-------TLFPGAQFIFVGIVAMPFTYYRVPLLRMWLDLAVFVIFLAVYTIVVANMYDKSSANAPEIALGFYVIAAIMAEAGAVGRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLLGAPLLFPRILFFAQIHPSQGALLQ-----------FSIIMIVVMMGFVVSFWASSERYRIVNEDESATFDLMWVAVFKAMLGD---FGDVESLTEEPDWVDRLLFVFYLIVMTIMLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLNLLQLLALFPILVIDLCIHRGLYDRLKPTIARIMGSFVFWATLSPVAIALSSLLWFVSTPTIIISRWDQNASLWGNVSRSVAAVFESLIAVPLTLFWLWALGVVNGARQIV------------DLAQGRRL--EIPTSVSFLSNMPQVPTTVGE-----------ILMTE--GRLSVHELSACLEDPMSDPEVRRDEENRPTTVQHIKLLRNRLEATRADHLVDIMAHIESAANAREGRLE 2341
            A+   LS  QM D  ++ L T  + +         ++D     L++LL  GAK T      +  + + +    LK+    AIS+ +NPFIPGM LS+A  +    A   E+R+L  ++  ++ELLLEVLE MPQTV GF G    CS +FEPE   +R   ++GPL    SK   + T+CT PL++DF+S  F  GL +LR     V        +P   +  D L A+         LQR+         T FPGA+FI  G+++ P +YY+VP LRM LDL  +++ + ++   V       + +  EI    Y+   I+ E   +     EY+RD WN LDV ++ LL  G + R++    G   +Q   A Y L APL F RILFF QI PSQG ++Q           F +IM++VM+GFV SF++    Y+     E+ T+ ++W A+F+A LG+   F D    T   D V   L V YL+++TIM+LNLL+A+LSTAHA ++  A  E KA                               P++V                          W T                           + S  G ++R +  +F   +  P     +W  G V G R+ +                 +R+    PT+   +   P   TTV E           I++ E  G L+  EL   L+DPMSDP VRRDEE R TTV+HIKLLRNRLEAT  +H+  + A++   A     +LE
Sbjct:  614 AMGKFLSAYQMTDALSSSLSTGCNNLSLP------VEDARLSVLAYLLQHGAKPTNKG---LLRLCNLVKFPRLKESLLGAISSADNPFIPGMNLSVACTMATRRAMEGEKRRLASMQAAIDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETVISRFHGYQGPLHVVLSKRQQMETYCTIPLVLDFMSRKFTKGLPSLRDT-EGVLLNNTSFTEPGQTLYGDGLLAEGRVFFFGMALQRSYAGGTLSSITYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGDTFDWMEIVFTMYIFGGILTEFREILDDPWEYMRDQWNLLDVASLTLLLGGVIQRMY----GQVDDQSSRALYALSAPLAFARILFFVQILPSQGPIIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYS---LYK-----ETTTYGVVWKAIFRATLGETDYFDDFSGTTF--DGVATALLVVYLVLLTIMMLNLLVAVLSTAHAKVDADAGLEYKA-------------------------------PVVV--------------------------WQT-------------------------SGDKSRGGRIARMLLVIFACAVGAPFWHLVMWVRGGVAGVRRTMRALGCCXXXXXXXXGGAKRVGGRTPTASMTVRGFPA--TTVAEGAEHDMEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEATTKEHMDGLQAYLLKTAGDISRQLE 1287          
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 4.090e-79
Identity = 230/672 (34.23%), Postives = 330/672 (49.11%), Query Frame = 2
Query:  137 PNRHAVAARVA-------ALSTVLSMDQMADISTACLETELDGMDKTSTLRDLLQDFWPGRLSFLLACGAKVTTGADGHVDDI---SDSLGLVELKKCFRQAISAVENPFIPGMMLSLALVIEAPTAKAD-ERRKLTELREMVEELLLEVLERMPQTVLGFPGGAAACSLLFEPENTGTRSE-SFKGPLKTAFSKHHLITTFCTQPLIVDFISHTFGAGLLNL----------RSRIP-----------------SVAAGMLKKVDPAVVVRDPLAADLQRNRTTLFPGAQFIFVGIVAMPFTYYRVPLLRMWLDLAVFVIFLAVYTIVVANMYDKSSANAPEIALGFYVIAAIMAEAGAVGRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLLGAPLLFPRILFFAQIHPSQGALLQ-----------FSIIMIVVMMGFVVSFWASSERYRIVNEDESATFDLMWVAVFKAMLGDFGDVESLT-EEPDWVDRLLFVFYLIVMTIMLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLNLLQLLALFPILVIDLCIHRGLYDRLKPTIARIMGSFVFWATLSPVAIALSSLLWFVSTPTIIISRWDQNA-SLWGNVSRSVAAVFESLIAVPLTLFWLW 1996
            PN  A+AARV         L+ +L      +++    E       +T  LR  ++D   G LS LL  G K       H  D+     ++   EL +C  QA+++ +N FIP + LS A      +A ++ +RR L  L+  V+ +L E L+R+PQTV G  GG AAC+ L EPE     S    +GPL  A    H I TF T PL ++F+   F  GL  L          +SR+                  S+  G L +V   +   D LA        T FPGA FI  G+VA+P +YY+VPL+RM LD  VF   LA +T  V  +++K S    E+A   YV+AAIM EA  + +    YL D W      A+ +  A F+ R     + +     G   Y +G+PL++ R+L++AQ+ PSQG+ +Q           F ++M VV++GF +SF+A      +  + +  T     +  F+AMLG+ G  +    E+ D    +L V YL+VMTIMLLNLLIA+LSTAH  +EE     I+ S+ R   HYR VV  + LPAP NL QL+ L P  ++DL      Y    P   R +G  VFW  L P AI     +W VSTP  + +   + + S+   V R++  +    + VPL L   W
Sbjct:  365 PNLIALAARVGDCQLFETILAAMLETSTTYEVARVLAEAFSVATTETQGLRHTIEDPLRG-LSMLLQHGTKP------HPADLVILCRAIDYEELDECLFQAVASAKNSFIPSLNLSFAFRDAIRSAASERDRRVLARLQHDVDSILTETLDRLPQTVCGLSGGMAACTALLEPEEADDSSTYGERGPLARALGCPHRIVTFATTPLCMNFMLLKFTRGLPALNDGHSVLILEKSRLDVREEAKGHESLTALCPGSILGGFLPRVGKLLWEDDRLAP------LTFFPGAHFIATGVVALPNSYYKVPLMRMALDATVFTAALAFFTSRVL-LFEKGSLTIAEMAFAIYVVAAIMLEATEMWKDLAGYLLDRWKAPHFLALVVALAAFLAR-----AIDSDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYSMASELGQFFVVMGVVILGFAMSFFA------LFRDVKGETLRGALLDAFQAMLGEVGLFDDFVGEKHDLAATVLLVSYLLVMTIMLLNLLIAVLSTAHGKVEEAVL--IRVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCQMVDLLFKSNTY----PIARRGVGRIVFWLVLGPGAILGGIFVWLVSTPKALFAICRKRSLSILSRVGRTMLCLLWITLGVPLCLVVSW 1005          
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 3.720e-76
Identity = 203/581 (34.94%), Postives = 297/581 (51.12%), Query Frame = 2
Query:  386 ELKKCFRQAISAVENPFIPGMMLSLALVIEAPTAKAD-ERRKLTELREMVEELLLEVLERMPQTVLGFPGGAAACSLLFEPE---NTGTRSESFKGPLKTAFSKHHLITTFCTQPLIVDFISHTFGAGLLNLR----------SRIP-----------------SVAAGMLKKVDPAVVVRDPLAADLQRNRTTLFPGAQFIFVGIVAMPFTYYRVPLLRMWLDLAVFVIFLAVYTIVVANMYDKSSANAPEIALGFYVIAAIMAEAGAVGRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLLGAPLLFPRILFFAQIHPSQGALLQ-----------FSIIMIVVMMGFVVSFWASSERYRIVNEDESATFDLMWVAVFKAMLGDFGDVESLT-EEPDWVDRLLFVFYLIVMTIMLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLNLLQLLALFPILVIDLCIHRGLYDRLKPTIARIMGSFVFWATLSPVAIALSSLLWFVSTPTIIISRWDQNA-SLWGNVSRSVAAVFESLIAVPLTLFWLW 1996
            EL +C  QA+++ +N FIP + LS A      +A ++ +RR L  L+  V+ +L E L R+PQ+V G  GG AAC+ L EPE   ++ T  E  +GPL  A    H I TF T PL ++F+   F  GL  L+          SR+                  S+  G L +V   +   D LA        T FPGA FI  G+VA+P +YY+VPL+RM L+  +F   LA +T  V  +++K      E+A   YV+AAIM EA  + +    YL D W      A+ +  A F+ R     + +     G   Y +G+PL++ R+L++AQ+ PSQG+ +Q           F ++M VV++GF +SF+A      +  + +  T     +  F+AMLG+ G  +    E+ D    +L V YL+VMTIMLLNLLIA+LSTAH  +EE     I+ S+ R   HYR VV  + LPAP NL QL+ L P  ++D+      Y    P   R +G  VFW  L P AI     +W VSTP  + + W + + S+   + R++  +    + VPL L   W
Sbjct:  360 ELDECLFQAVASAKNSFIPSLNLSFAFRDAIRSAASERDRRVLARLQHDVDSILTETLNRLPQSVCGLSGGMAACTALLEPEVADDSSTYGE--RGPLARALGCTHRIVTFATTPLCMNFMLLKFTRGLPALKDGHSVLILEKSRLDIREEAKGHESLTALCPGSILGGFLPRVGKLLWDDDRLAP------LTFFPGAHFIATGVVALPNSYYKVPLMRMALEAMIFTAALAFFTSRVL-LFEKGQLTIAEVAFAIYVVAAIMLEATEMWKDLAGYLLDRWKAPHFLALVVALAAFLAR-----AIDPDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYGMASELGQFFVVMGVVILGFAMSFFA------LFRDVKGETIRGALLDAFQAMLGEVGLFDDFVGEKHDLAATVLLVSYLVVMTIMLLNLLIAVLSTAHGKVEEAVL--IRVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCKMVDVLFKGNTY----PIARRGVGRIVFWLLLGPGAILGGVFVWLVSTPKALFAIWGKRSLSIASRLGRTMLCLLWITLGVPLCLVVSW 914          
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 1.670e-75
Identity = 210/664 (31.63%), Postives = 309/664 (46.54%), Query Frame = 2
Query:  362 ISDSLGLVELKKCFRQAISAVENPFIPGMMLSLALVIEAPTAKADERRKLTELREMVEELLLEVLERMPQTVLGFPGGAAACSLLFEPENTGT-RSESFKGPLKTAFSKHHLITTFCTQPLIVDFISHTFGAGLLNLRSRIPSVAAGMLKKVDPAVVVRDPLAADL-----------------------------------------------QRNRT--------------------------------------------------TLFPGAQFIFVGIVAMPFTYYRVPLLRMWLDLAVFVIFLAVYTIVVANMYDKSSANAPEIALGFYVIAAIMAEAGAVGRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLLGAPLLFPRILFFAQIHPSQGA-----------LLQFSIIMIVVMMGFVVSFWASSERYRIVNEDESATFDLMWVAVFKAMLGDFGDVESLTEEPDWVD--RLLFVFYLIVMTIMLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLNLLQLLALFPILVIDLCIHRGLYDRL-KPTIARIMGSF---VFWATLSPVAIALSSLLWFVSTPTIIISRWDQ----NASLWGNVSRSVAAVFESLIAVPLTLFWLW 1996
            +++ L L E+K CF   +S V+NPFIPG+ LS+AL      A   E R L  L++ +++LL  VL+R+PQT+  FPGG   C  + EPE  G  R   F+GPL+ A  +     T C  PL+  ++ + F AGL +L+     +     K+   +     P+ A +                                               +R R                                                   T  PGAQF+ VGI+  P  YY+VP++RM L   V +I LA+YT V     D   +N  EIAL F+V+A I++    +     E+ RD WNWL+  ++ LL+ G  +RI      +D  Q G A + L APL+F R+LFF Q    QG            +LQF++++  +MMGF VSF+A  E        E+ ++  +W+ VFKAMLG+      + E+  + D  R+L V YL V+ +MLLNLLIA+LST HA ++E+ +   + SKVR M+ Y R+V ++VLP+P NL       P + + L + RG+   L   T  +IM  F   VFW TL   AI ++  LW  S P  +++ W +      SL   V+ S   V   + A+P  L W W
Sbjct:  201 LAEILKLEEMKDCFLGGLSFVDNPFIPGLSLSVALEESLKNAPERESRCLEALQKAMDDLLRAVLDRLPQTIASFPGGVGGCESVLEPEVAGVLRDRDFRGPLRLALQERQFSKTLCIAPLMFKYMCYRFVAGLPDLQDSNDLLGGREEKRTRTSFETSGPVRAPVASAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSGTRRGRKGRDFLYSDGFVAGSATERLLQGLGWTGRRAAAALTPPPERPSDWETIFSGTFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTAVALESDDGELSNT-EIALTFHVMAEIVSNLLQMRAGFVEFWRDKWNWLESLSLLLLAGGLTIRI----RNSDVHQ-GRALFALSAPLVFSRVLFFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFE--------EAKSYGDVWLDVFKAMLGEVSVFSEIYEDSVYRDVARVLLVVYLTVVAVMLLNLLIAVLSTEHAKVDEQQDIAFRESKVRIMKLYVRIVDSDVLPSPFNL-------PQIAVGL-VARGVDGLLGTKTCPKIMREFSVGVFWLTLGSPAILIAWGLWAASAPMAVLTAWRRATYTGRSLTVAVACSSVVVVLHVFALPFVLSWFW 842          
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 1.350e-69
Identity = 249/764 (32.59%), Postives = 345/764 (45.16%), Query Frame = 2
Query:  392 KKCFRQAISAVENPFIPGMMLSLALVIEAPTAKADERRKLTELREMVEELLLEVLERMPQTVLGFP--GGAAACSLLFEPE--NTGTRSESFKGPLKTAFSKHHLITTFCTQPLIVDFISHTFGAGLLNLRSRIPSVAAGMLKK------VDPAVVVRDP------------LAADLQRNRT---------TLFPGAQFIFVGIVAMPFTYYRVPLLRMWLDLAVFVIFLAVYT-IVVANMYDKSSAN-----APEIALGFYVIAAIMAEAGA------VGRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLLGAPLLFPRILFFAQIHPSQG-----------ALLQFSIIMIVVMMGFVVSFWASSERYRIVNEDESATFDLMWVAVFKAMLGDFGDVESLTE-EPDWVDRLLFVFYLIVMTIMLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLNLLQLLALFPILVIDLCIH------RGLYDRLKP----------------------TIARIMGSFVFWATLSPVAIALSSLLWFVSTPTII-------ISRWDQNASLWG-----------------------------NVSRSVAAVFESL---IAVPLTLFWLWALGVVNGARQIV----------------DLAQGRRLEIPTSVSFLSNMPQVPTTVGEILMTEG--RLSVHELSACLEDPMSDPEVRRDEENRPTTVQHIKLLRNRLE 2263
            K+C  +A+++  NPF+PG+ LS+ L   A  A   ERR L + +  ++ELLLE+ ER+PQTV GF    G  +C+ + EPE     T S    GPL    S    + TFC  PLI+DF+S  F  GL +L        AG+LK       ++   + RD             LAA L+  R          T  PG QFI   +VA P  YY VP +RM LD  V+V  +AV +  V+ +   +S +      A  ++L     A I   AGA      + R  R Y +D WN LD   I  L  G V+R W     + T   G A Y L APL+  R+LFFAQI    G            LLQF  +M+VVM+GF +   A    +R     + A F    + +FKAMLG+ G  +  +    D V  +L V YL ++T+MLLNLLIAILST HA + E      K SK R + HYR VV N+VLPAP NL+QL+    ++V+ L  +      R   +  +P                      +  R  G FV+W  L  VA+A  ++LW +S            +S  D+  S +G                              + + V  VF S+   I V L  F ++ L ++     +V                 LA  R  + P            PT   E ++ +G        L   LEDPM+D +VR+DE+ R TTV+HIKLLR+RLE
Sbjct:  540 KRCCLRAVTSAANPFVPGVTLSIRLSEAAKQASEGERRALFDTKSSIDELLLEMFERLPQTVRGFEEQAGMDSCTNVLEPELMRATTGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLSSKFTLGLPDLMD-----TAGLLKNEHHLWYLEEDGLFRDEHGFGSDGIPVALLAALLKGVRQGIWDNTPILTFLPGTQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAVLSSFVLFHSTTESDSGLDGIVAHRLSLSEGACALIFITAGAYREGREMKRGIRAYFKDQWNVLDALGILFLFVGLVIR-WD----DWTSTWGPAFYALSAPLVVARVLFFAQILQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTM---ALHVFFR-----DVADFGDTLLGLFKAMLGETGIFDEFSGGRYDPVATILVVVYLCIVTVMLLNLLIAILSTEHAQVMENTAEAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLILSLGVIVLTLPYYFLLEAKREHSETERPATDEDGRLFWGNVWEGARHRHRSARRAFGQFVWWLVLGSVAVAGGAMLWSLSGLFYAQYACHSWLSTTDEQNSFFGFLQEGDEEPDEEDTAKDVVVFGSCGSPLWRMLQGVRIVFRSVLQWIGVVLAWFLIFLLCILGAPCCLVLRWLILPGTEFFSWCWKLAACRSTQDPGEDKKSPMRSSTPTI--ESMLKKGCCGAGAENLLEFLEDPMNDKDVRQDEKERKTTVEHIKLLRDRLE 1283          
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 5.540e-69
Identity = 248/768 (32.29%), Postives = 344/768 (44.79%), Query Frame = 2
Query:  392 KKCFRQAISAVENPFIPGMMLSLALVIEAPTAKADERRKLTELREMVEELLLEVLERMPQTVLGFP--GGAAACSLLFEPENTGTRSES--FKGPLKTAFSKHHLITTFCTQPLIVDFISHTFGAGLLNLRSRIPSVAAGMLKK------VDPAVVVRDP------------LAADLQRNRT---------TLFPGAQFIFVGIVAMPFTYYRVPLLRMWLDLAVFVIFLAVYTIVVANMYDKSSANAPEI--------ALGFYVIAAIMAEAGA------VGRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLLGAPLLFPRILFFAQIHPSQG-----------ALLQFSIIMIVVMMGFVVSFWASSERYRIVNEDESATFDLMWVAVFKAMLGDFGDVESLTE-EPDWVDRLLFVFYLIVMTIMLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLNLLQLLALFPILVID------LCIHRGLYDRLKPTI----------------------ARIMGSFVFWATLSPVAIALSSLLWFVSTPTIIISRW-------DQNASLWG------------NVSRSVAA-----------------VFESLI------------------AVPLTLFWLWALGVVNGARQIV---DLAQGRRLEIPTSVSFLSNMPQVPTTVGEILMTEGRLSV--HELSACLEDPMSDPEVRRDEENRPTTVQHIKLLRNRLE 2263
            K+C  +A+++  NPFIPG+ LS+ L   A  A   ERR L E +  ++E+LLE+ ER+PQTV GF    G  +C+ + EPE    +S S    GPL    S    + TFC  PLI+DF+S  F  GL +L        AG+LK       ++   + RD             L A L+  R          T  PGAQFI   +VA P  YY VP +RM LD  V+V  +A  +  V  ++  ++ + P +        +L     A I   AGA      + R  R Y +D WN LD   +  L  G V+R W     + T   G A Y L APL+  R+LFFAQI   QG            LLQF  +M+VVM+GF ++         ++  D     D + + +FKAMLG+ G  +  +    D V  +L V YL ++T+MLLNLLIAILST HA ++E      K SK R + HYR VV N+VLPAP NL+QLL    ++ +       L   R   +  +P I                       R  G  V+W  L PVA+A  ++LW +S        W       D+    +G            ++S+ V                   VF  L+                    P  LF  W   V+ G         LA  R  + P            PT   E ++ +GR  V   +L   LEDPM+D +VR+DE+ + TTV+HIKLLR+RLE
Sbjct:  523 KRCCLRAVTSAANPFIPGVTLSIRLTEAAKQASEGERRALFETKSSIDEMLLEMFERLPQTVRGFEEQAGTDSCTNVLEPELMRAQSGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLSSKFTLGLPDLMD-----TAGLLKNEHQLWYLEEDGLFRDEHGLGLDGIPVALLEALLKGVRQGIWDNTPTLTFLPGAQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAALSYFV--LFHSTTGSDPGLDGIADHRFSLSEGACALIFITAGAYREGREMKRGIRAYFKDQWNVLDALGMLFLFVGLVIR-WD----DWTSTWGPAFYALSAPLVVARVLFFAQILQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMAL-------HVIFRDVEDFGDTL-LGLFKAMLGETGFFDEFSGGRYDPVATILVVVYLFIVTVMLLNLLIAILSTEHAQVQENTGGAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLLLSLGVIAMTFPYCFLLEAKREQSETERPAIDEHGRLFWGNVWEGARQRHRGARRAFGQLVWWLVLGPVAVAGGAILWGLSGFFYAQYAWHSWLSTTDEQDCFFGFLLESDEEPDAEDMSKEVVMFGSCGSPLWRMLQGLGIVFRFLLEWIGVVLAWFLTFLLCILGAPCCLFLRWL--VLPGTEFFSWCWKLAACRSTQDPDEDEESPKRLSTPTI--ESMLKKGRSGVGAEKLLEFLEDPMNDKDVRQDEKEKKTTVEHIKLLRDRLE 1266          
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 9.490e-57
Identity = 183/521 (35.12%), Postives = 261/521 (50.10%), Query Frame = 2
Query:  872 TLFPGAQFIFVGIVAMPFTYYRVPLLRMWLDLAVFV-IFLAVYTIVVANMYDKSSA--------------NAPEIALGFYVIAAIM-AEAGAVGRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLLGAPLLFPRILFFAQIHPSQG---------ALLQFSIIMIVVMMGFVVSFWASSERYRIVNEDESATFDLMWVAVFKAMLGDFGDVESLTEEP-DWVDRLLFVFYLIVMTIMLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLNLLQLLALFPIL--VIDLC-------------IHRG--LYDRLKPTIARIMGSFVFWATLSPVAIALSSLLWFVSTPTIIISRWDQNASLWGNVSRSVAAVFESLIAVPLTLFWLWALGVVNGARQ---IVDLAQGRRL----EIPTSVSFLSNMPQVPTTVGEILMTEGRLSVHELSACLEDPMSDPEVRRDEENRPTTVQHIKLLRNRLEATRADHL 2284
            T FP AQFI  G+ A    Y+RVP++RM LDL V++ + +A+ T V+     + S               N  E      VIA  M  E   + R+   YL D WN LD+  +   + GF+ R+      + T+Q+G A Y L APLL  R LFF QIHP QG          LL+F  +M VVM+GF ++F      +         +F   ++ +FKAM G+     + + +  D V  +L V YL ++TI+LLNLL+AILST+H+ +++  + E KAS  R M+HY+ VV N++LPAP NLLQL+  +PI   V   C             ++RG   Y+R    I    G  VFW  L PVA+   +LLW VSTP  +         LW    R       SLI++    F++  L  + GA     ++ L   RRL        S++   +     T    +L   G +   +L   L+DPM D +VR+DE ++ TTV+H+KLLRNRLE T  D L
Sbjct:  528 TPFPAAQFIVAGLAARSNDYFRVPVMRMVLDLVVYLGVLVALSTFVLFRSQAEQSRVDGSADEEIVFRKLNWSEATCATAVIAGGMYREWFEMARNYGRYLEDQWNALDLLGLLFFTIGFIARV-----VDWTQQLGPAFYALSAPLLVSRALFFVQIHPLQGPMVIFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRDFD--------SFGESFLELFKAMFGETTFFNAFSGDTYDAVATMLLVVYLSIVTILLLNLLVAILSTSHSKVQKNIDREFKASIARMMDHYQLVVTNDILPAPFNLLQLVV-WPIAWCVGGCCGRSTSGSQSTRQELNRGREAYERGNKAI----GPVVFWVVLGPVAVVGGTLLWIVSTPLSVY--------LWRKHHREGDRKRLSLISLGCRYFFIIPLWCILGAPVYLFVLWLGASRRLLCRCNYDVSIAHAESGHFRCTIESILLEGPGGVGAKKLREFLDDPMDDKDVRQDERDKRTTVEHVKLLRNRLENTIQDEL 1022          
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 4.690e-53
Identity = 176/543 (32.41%), Postives = 258/543 (47.51%), Query Frame = 2
Query:  872 TLFPGAQFIFVGIVAMPFTYYRVPLLRMWLDLAVFV-IFLAVYTIVVANMYDKSS--------------ANAPEIALG-FYVIAAIMAEAGAVGRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLLGAPLLFPRILFFAQIHPSQGALLQ----------------------FSIIMIVVMMGFVVSFWASSERYRIVNEDESATFDLMWVAVFKAMLGDFGDVESLTEEP-DWVDRLLFVFYLIVMTIMLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLNLLQLLALFPILVIDLCIH-------------RGLYDRLKPTIA---RIMGSFVFWATLSPVAIALSSLLWFVST-PTIIISR-------------WDQNAS--LWGNVSRSVAAV-FESLIAVPLTLFWLWALGVVNGARQIVDLAQGRRLEIPTSVSFLSNMPQVPTTVGEILMTEGRLSVHELSACLEDPMSDPEVRRDEENRPTTVQHIKLLRNRLEATRADHL 2284
            T FPGAQ I  G+ A P  Y+RVP +RM LDL V++ + +A+ T V+ +   + S               + PE      +++  +  E   + R+   Y  D WN LD+ ++  L+ G V R+      +   Q+G A Y L APLL  R LFF QIHP QG ++Q                      F  +M V+++GF ++F      +         +F   ++ +FKAMLGD    +  + +  D V   L V YL ++T+MLLNLL+AILST+HA + E  E E K S  R M+HY+ VV N++LP P NLLQL+  +PI     C+H             +   +R K   A   + +G  VFW  L PVA+   SLLW  S  P +   R              D   S  LW    R V  +    +   P+ L  LW    +N +R+++        +   S +   +     T    +L + G +   +L   L+DPM D +VR+DE++R TTV+HIKLLRNRLE T  + L
Sbjct:  707 TPFPGAQVIVAGLAARPNDYFRVPAMRMVLDLVVYIGMIVALSTFVLFHSQAEKSYVEGSTDEQVVFRTLDWPEATCAKIFIVGGVFQEGREMARNFGRYCEDQWNALDLLSLLFLTIGLVGRV-----VDWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFD--------SFGESFLDLFKAMLGDTDFFKVFSGDTYDVVATFLLVVYLFIVTVMLLNLLVAILSTSHAQVAENIEREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLIV-WPI---AWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIGPVVFWVVLGPVAVIGGSLLWMGSVLPAMYFWRKHHRLQNKRDNGGGDSKRSMHLWSLFLRYVVIIPCWCVFGAPVYLLLLW----LNASRRVLSRCPCN--DDTRSTAKSRHGASKSTIESMLLKSPGGVGAQKLREFLDDPMDDKDVRQDEKDRRTTVEHIKLLRNRLENTSKEQL 1226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10909.734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDE6_9PHAE2.740e-10434.07Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FLB1_ECTSI2.800e-9434.21Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LT30_ECTSI2.030e-8532.10Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JMG8_9PHAE4.090e-7934.23Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR83_ECTSI3.720e-7634.94Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
D7FMG5_ECTSI1.670e-7531.63Transient receptor potential channel n=1 Tax=Ectoc... [more]
A0A6H5KBU4_9PHAE1.350e-6932.59Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FZR6_ECTSI5.540e-6932.29Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JG42_9PHAE9.490e-5735.12Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJG3_9PHAE4.690e-5332.41Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10909contigH-elongata_contig10909:3338..7206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score336.3
Seed ortholog evalue4e-89
Seed eggNOG ortholog2880.D7FLB1
KEGG koko:K04981
KEGG TC1.A.4.5.8
KEGG Pathwayko04978,map04978
EggNOG free text desc.ion channel activity
EggNOG OGsKOG3614@1,KOG3614@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04040
Hectar predicted targeting categoryother localisation
Exons5
Model size2708
Cds size2400
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.9359586-UTR-H-elongata_contig10909:3337..33891622929617.9359586-UTR-H-elongata_contig10909:3337..3389Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10909 3338..3389 +
1691679093.289497-UTR-H-elongata_contig10909:3337..33891691679093.289497-UTR-H-elongata_contig10909:3337..3389Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10909 3338..3389 +
1622929618.0627692-UTR-H-elongata_contig10909:6950..72061622929618.0627692-UTR-H-elongata_contig10909:6950..7206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10909 6951..7206 +
1691679093.3556247-UTR-H-elongata_contig10909:6950..72061691679093.3556247-UTR-H-elongata_contig10909:6950..7206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10909 6951..7206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.9572616-CDS-H-elongata_contig10909:3389..34041622929617.9572616-CDS-H-elongata_contig10909:3389..3404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 3390..3404 +
1691679093.3006191-CDS-H-elongata_contig10909:3389..34041691679093.3006191-CDS-H-elongata_contig10909:3389..3404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 3390..3404 +
1622929617.9779718-CDS-H-elongata_contig10909:3616..37481622929617.9779718-CDS-H-elongata_contig10909:3616..3748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 3617..3748 +
1691679093.3103518-CDS-H-elongata_contig10909:3616..37481691679093.3103518-CDS-H-elongata_contig10909:3616..3748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 3617..3748 +
1622929617.9977188-CDS-H-elongata_contig10909:4053..49261622929617.9977188-CDS-H-elongata_contig10909:4053..4926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 4054..4926 +
1691679093.3200903-CDS-H-elongata_contig10909:4053..49261691679093.3200903-CDS-H-elongata_contig10909:4053..4926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 4054..4926 +
1622929618.01313-CDS-H-elongata_contig10909:5279..55311622929618.01313-CDS-H-elongata_contig10909:5279..5531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 5280..5531 +
1691679093.3289814-CDS-H-elongata_contig10909:5279..55311691679093.3289814-CDS-H-elongata_contig10909:5279..5531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 5280..5531 +
1622929618.0326555-CDS-H-elongata_contig10909:5822..69501622929618.0326555-CDS-H-elongata_contig10909:5822..6950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 5823..6950 +
1691679093.344288-CDS-H-elongata_contig10909:5822..69501691679093.344288-CDS-H-elongata_contig10909:5822..6950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 5823..6950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10909.734.1prot_H-elongata_contig10909.734.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10909 3390..6950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10909.734.1

>prot_H-elongata_contig10909.734.1 ID=prot_H-elongata_contig10909.734.1|Name=mRNA_H-elongata_contig10909.734.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=800bp
MDEDQAIIMLRDSTFDGSSDADLCSCFTPNRHAVAARVAALSTVLSMDQM
ADISTACLETELDGMDKTSTLRDLLQDFWPGRLSFLLACGAKVTTGADGH
VDDISDSLGLVELKKCFRQAISAVENPFIPGMMLSLALVIEAPTAKADER
RKLTELREMVEELLLEVLERMPQTVLGFPGGAAACSLLFEPENTGTRSES
FKGPLKTAFSKHHLITTFCTQPLIVDFISHTFGAGLLNLRSRIPSVAAGM
LKKVDPAVVVRDPLAADLQRNRTTLFPGAQFIFVGIVAMPFTYYRVPLLR
MWLDLAVFVIFLAVYTIVVANMYDKSSANAPEIALGFYVIAAIMAEAGAV
GRSNREYLRDSWNWLDVPAIFLLSAGFVVRIWTTLSGNDTEQVGEACYLL
GAPLLFPRILFFAQIHPSQGALLQFSIIMIVVMMGFVVSFWASSERYRIV
NEDESATFDLMWVAVFKAMLGDFGDVESLTEEPDWVDRLLFVFYLIVMTI
MLLNLLIAILSTAHANIEERAETEIKASKVRTMEHYRRVVVNNVLPAPLN
LLQLLALFPILVIDLCIHRGLYDRLKPTIARIMGSFVFWATLSPVAIALS
SLLWFVSTPTIIISRWDQNASLWGNVSRSVAAVFESLIAVPLTLFWLWAL
GVVNGARQIVDLAQGRRLEIPTSVSFLSNMPQVPTTVGEILMTEGRLSVH
ELSACLEDPMSDPEVRRDEENRPTTVQHIKLLRNRLEATRADHLVDIMAH
IESAANAREGRLENIMSAAIASAVNERVDALEKCTQNKLDDILMKLKTL*
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mRNA from alignment at H-elongata_contig10909:3338..7206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10909.734.1 ID=mRNA_H-elongata_contig10909.734.1|Name=mRNA_H-elongata_contig10909.734.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3869bp|location=Sequence derived from alignment at H-elongata_contig10909:3338..7206+ (Himanthalia elongata Himel1 dioecious)
GAATGGAGGGGCAGCCAGTTTCAGAGCAGTTGTGGAGATATTGGACAAAC GGATGGACGAAGATCAGGTTAGTAAGGTCCTTAATGGCACAAGGTATGCG GCGCCCGACTTATGACAAATCACTTCGCATATCAGGGTTATGGCCGGAGT CCATGAACGACAGAAATACGGCAAGAGCTACCACTAGCCTTGTCGTGCCG CCCACAGCACATGTGGCTTCGTTTTATCGAATATTCTTACCGCGCTTGTC TTTTTGGATACGCCTTTTGCTACTGCCAGGCGATCATCATGCTTCGGGAC AGTACGTTCGACGGCAGCAGTGATGCCGACCTGTGTTCTTGCTTTACTCC TAATAGGCACGCCGTCGCGGCACGTGTTGCTGCACTGTCTACCGTACTAT CGATGGACCAGGTAAAGCATAAGAACTTCGCCCAATTTTTATGGCATACA GATGTTACCAGCATGCCTTCTTTGGCCGATAGCGAGAGAGCGGACTATGC TTGGCTGAAAACGTTAGGCTACAGTGTGAAGAAAGCACTGGGATCCCTGT ATGCACATACATCCGAATGCCTTCTTCTTGTATTGGAGAAGTGACGACAT TCACGGCCGTTGTCAAACACATAATTCTTTTTGGCGCGGAGGCTGAGTAC CAGAAATTTCGATGACCGTATTCACCAGCTTTCGCTTCGGTGATAATATC TACACGTGTGAATCAGATGGCTGATATATCCACAGCTTGCTTGGAAACTG AGCTTGATGGAATGGACAAGACTTCGACTCTCCGGGATCTCCTCCAAGAT TTCTGGCCAGGGAGACTTTCGTTCCTCCTCGCATGTGGAGCAAAGGTGAC AACCGGTGCGGACGGACATGTCGACGACATTTCTGACAGTCTCGGGCTCG TCGAGCTGAAGAAGTGTTTTAGACAAGCCATATCCGCTGTAGAAAACCCT TTCATACCTGGTATGATGCTGTCACTTGCCCTGGTGATAGAAGCGCCTAC TGCCAAAGCAGACGAACGACGGAAGCTGACCGAGCTGCGGGAAATGGTGG AAGAGCTACTTCTTGAAGTGCTTGAGCGTATGCCTCAAACTGTGCTAGGA TTTCCTGGTGGAGCAGCAGCGTGCTCACTTTTGTTCGAGCCTGAAAACAC TGGAACTCGTTCAGAGTCATTTAAGGGACCTTTAAAGACGGCCTTCAGCA AGCACCACCTTATAACAACATTCTGCACGCAGCCATTGATAGTGGACTTC ATCAGCCACACGTTTGGCGCTGGTCTACTAAACCTACGGTCCAGGATTCC ATCGGTCGCCGCTGGAATGCTCAAGAAGGTCGACCCCGCCGTAGTCGTAA GAGACCCCCTGGCGGCAGATCTACAGCGAAATCGGACGACGCTGTTTCCT GGGGCGCAGTTTATTTTCGTGGGAATCGTTGCCATGCCCTTCACGTACTA CAGGGTACCCCTTCTCCGGATGTGGCTGGACCTCGCCGTGTTCGTGATTT TTCTCGCTGTTTACACTATCGTCGTCGCCAATATGTACGACAAGTCTTCG GCGAATGCGCCCGAAATTGCGCTCGGGTTCTACGTTATTGTGAGTTTTTC GAACATCCATCCAACCGGGTTATAAGCTAGAGGGAAAACTGTGTACCCTG GTAACTGTTTAAGACTATCGATCTGCGTTCCATATATCGAGTTTCATGCC GCAATACCGCTTTGCATTCGCTGACCAAATCGGTTCATCAATTATCGAAT GATAAGACCAAATGTCCGAACTGATTGAGGGAGTATGACTCCGTAAAAAT AAAAACGAATTATATTCGTTAGATGGACATGCCCCGTTTCAACGTTGCCA GCTTCCGTCAATAAAAAGCGATATGCGACATAAGCCTTCGTTGGCGCTGT GGCATGTTTGATGCTTGATTGTTTGTTTTCCACCTGCTCCAGGCCGCGAT AATGGCAGAGGCTGGCGCAGTAGGAAGGAGCAACCGTGAGTACTTAAGGG ATAGCTGGAACTGGCTGGATGTGCCGGCTATTTTCCTTCTCTCTGCTGGG TTTGTGGTTCGCATTTGGACCACTTTGAGTGGAAACGACACAGAGCAAGT TGGCGAAGCCTGCTACCTCCTGGGGGCACCGCTCTTGTTTCCTCGCATCC TTTTCTTTGCTCAAATCCACCCTTCTCAGGGAGCATTGTTACAGGTGAGA TCAATCGTGAAGAACCCGACGCCGAAACGTTCTTTCATCGTTCATTCCAA GCTGCGTGTCGCTGGCGCTAATTTGAATTTCCAGACTGCTATACGTCGAA TAGCGGCCAATTTTTAGTAACGTCACGTTCATGAGCTTCTGCAGCGCCGC GTCTAAATATATTGCGTTCTATATATGGGTGAATTCTTTGCGGAGATAGT TCAATGTTGCAAAGATGACCAACTTCCGTTGGGTGCTCACGCCACCGGTC AGGTAATGATGCGCATGGTGAGCAAGGTACTGCAGTTTTCGATTATCATG ATTGTCGTCATGATGGGATTCGTGGTGTCATTTTGGGCTAGCAGCGAGCG CTACCGCATTGTGAATGAAGATGAGTCCGCGACCTTCGATCTCATGTGGG TGGCTGTTTTCAAAGCCATGCTCGGCGATTTCGGCGACGTGGAATCCTTG ACTGAAGAGCCCGACTGGGTTGACAGACTGTTGTTCGTCTTTTACCTGAT CGTCATGACCATCATGCTGCTGAACCTGCTCATTGCAATCTTGAGCACAG CACATGCAAATATCGAGGAACGCGCAGAGACTGAAATCAAGGCCTCGAAG GTGCGTACAATGGAGCACTATCGACGGGTTGTGGTGAACAACGTGCTCCC TGCACCGCTCAATTTACTTCAGCTTCTTGCGTTGTTCCCGATCCTAGTGA TTGATCTATGCATTCACCGCGGGCTGTACGACCGCCTTAAGCCAACAATC GCGAGGATTATGGGGAGTTTTGTTTTCTGGGCAACATTGAGTCCCGTTGC GATTGCGTTGAGTTCCTTACTGTGGTTCGTATCAACACCGACTATTATAA TCAGCAGATGGGATCAAAATGCATCGCTCTGGGGCAACGTCTCTCGCAGT GTTGCAGCCGTGTTTGAGAGTTTGATTGCTGTTCCCTTGACATTATTTTG GTTGTGGGCGTTGGGTGTGGTAAATGGGGCACGCCAGATTGTTGACCTAG CTCAAGGTAGGCGGCTTGAGATACCAACGTCAGTCTCCTTTTTATCGAAT ATGCCCCAAGTTCCAACAACTGTTGGAGAAATCCTAATGACAGAGGGTCG GCTCAGCGTACATGAGCTATCGGCATGTCTTGAAGATCCGATGAGCGACC CAGAGGTGCGACGAGACGAAGAAAATCGACCTACGACAGTGCAACACATC AAGCTACTCAGGAATCGTCTTGAAGCAACACGTGCTGACCACCTGGTAGA TATAATGGCTCACATTGAAAGTGCCGCCAACGCGAGGGAGGGGCGACTGG AGAATATAATGTCAGCGGCAATCGCAAGCGCTGTTAACGAGAGAGTTGAC GCGCTGGAAAAATGCACACAAAACAAGCTTGATGACATTCTCATGAAGCT CAAGACTTTGTGAGCATGATAGTTCCTTGTAGGTATATAATTTGACGACG AACGCTCTACTCGGGTATTCAGCTGGACTTAATTGCGGGGTAAAACATAG TTAAATGTTTTTGCGCGCTGCTATGCGCGACCGAGAAGTAGTGTGAGCTA GTTTAAAAGGGCACGGTGAGCCTCGAGATCAGCGCGTAACGGGATATGTC TTGATTCACTGGTGGCATCTAGGGGGTAGAGAAGGAAACGGAAGGACGCC CAAATAAATTGAAGAGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig10909:3338..7206+

>mRNA_H-elongata_contig10909.734.1 ID=mRNA_H-elongata_contig10909.734.1|Name=mRNA_H-elongata_contig10909.734.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4800bp|location=Sequence derived from alignment at H-elongata_contig10909:3338..7206+ (Himanthalia elongata Himel1 dioecious)
ATGGACGAAGATCAGATGGACGAAGATCAGGCGATCATCATGCTTCGGGA
CAGTACGTTCGACGGCAGCAGTGATGCCGACCTGTGTTCTTGCTTTACTC
CTAATAGGCACGCCGTCGCGGCACGTGTTGCTGCACTGTCTACCGTACTA
TCGATGGACCAGGCGATCATCATGCTTCGGGACAGTACGTTCGACGGCAG
CAGTGATGCCGACCTGTGTTCTTGCTTTACTCCTAATAGGCACGCCGTCG
CGGCACGTGTTGCTGCACTGTCTACCGTACTATCGATGGACCAGATGGCT
GATATATCCACAGCTTGCTTGGAAACTGAGCTTGATGGAATGGACAAGAC
TTCGACTCTCCGGGATCTCCTCCAAGATTTCTGGCCAGGGAGACTTTCGT
TCCTCCTCGCATGTGGAGCAAAGGTGACAACCGGTGCGGACGGACATGTC
GACGACATTTCTGACAGTCTCGGGCTCGTCGAGCTGAAGAAGTGTTTTAG
ACAAGCCATATCCGCTGTAGAAAACCCTTTCATACCTGGTATGATGCTGT
CACTTGCCCTGGTGATAGAAGCGCCTACTGCCAAAGCAGACGAACGACGG
AAGCTGACCGAGCTGCGGGAAATGGTGGAAGAGCTACTTCTTGAAGTGCT
TGAGCGTATGCCTCAAACTGTGCTAGGATTTCCTGGTGGAGCAGCAGCGT
GCTCACTTTTGTTCGAGCCTGAAAACACTGGAACTCGTTCAGAGTCATTT
AAGGGACCTTTAAAGACGGCCTTCAGCAAGCACCACCTTATAACAACATT
CTGCACGCAGCCATTGATAGTGGACTTCATCAGCCACACGTTTGGCGCTG
GTCTACTAAACCTACGGTCCAGGATTCCATCGGTCGCCGCTGGAATGCTC
AAGAAGGTCGACCCCGCCGTAGTCGTAAGAGACCCCCTGGCGGCAGATCT
ACAGCGAAATCGGACGACGCTGTTTCCTGGGGCGCAGTTTATTTTCGTGG
GAATCGTTGCCATGCCCTTCACGTACTACAGGGTACCCCTTCTCCGGATG
TGGCTGGACCTCGCCGTGTTCGTGATTTTTCTCGCTGTTTACACTATCGT
CGTCGCCAATATGTACGACAAGTCTTCGGCGAATGCGCCCGAAATTGCGC
TCGGGTTCTACGTTATTATGGCTGATATATCCACAGCTTGCTTGGAAACT
GAGCTTGATGGAATGGACAAGACTTCGACTCTCCGGGATCTCCTCCAAGA
TTTCTGGCCAGGGAGACTTTCGTTCCTCCTCGCATGTGGAGCAAAGGTGA
CAACCGGTGCGGACGGACATGTCGACGACATTTCTGACAGTCTCGGGCTC
GTCGAGCTGAAGAAGTGTTTTAGACAAGCCATATCCGCTGTAGAAAACCC
TTTCATACCTGGTATGATGCTGTCACTTGCCCTGGTGATAGAAGCGCCTA
CTGCCAAAGCAGACGAACGACGGAAGCTGACCGAGCTGCGGGAAATGGTG
GAAGAGCTACTTCTTGAAGTGCTTGAGCGTATGCCTCAAACTGTGCTAGG
ATTTCCTGGTGGAGCAGCAGCGTGCTCACTTTTGTTCGAGCCTGAAAACA
CTGGAACTCGTTCAGAGTCATTTAAGGGACCTTTAAAGACGGCCTTCAGC
AAGCACCACCTTATAACAACATTCTGCACGCAGCCATTGATAGTGGACTT
CATCAGCCACACGTTTGGCGCTGGTCTACTAAACCTACGGTCCAGGATTC
CATCGGTCGCCGCTGGAATGCTCAAGAAGGTCGACCCCGCCGTAGTCGTA
AGAGACCCCCTGGCGGCAGATCTACAGCGAAATCGGACGACGCTGTTTCC
TGGGGCGCAGTTTATTTTCGTGGGAATCGTTGCCATGCCCTTCACGTACT
ACAGGGTACCCCTTCTCCGGATGTGGCTGGACCTCGCCGTGTTCGTGATT
TTTCTCGCTGTTTACACTATCGTCGTCGCCAATATGTACGACAAGTCTTC
GGCGAATGCGCCCGAAATTGCGCTCGGGTTCTACGTTATTGCCGCGATAA
TGGCAGAGGCTGGCGCAGTAGGAAGGAGCAACCGTGAGTACTTAAGGGAT
AGCTGGAACTGGCTGGATGTGCCGGCTATTTTCCTTCTCTCTGCTGGGTT
TGTGGTTCGCATTTGGACCACTTTGAGTGGAAACGACACAGAGCAAGTTG
GCGAAGCCTGCTACCTCCTGGGGGCACCGCTCTTGTTTCCTCGCATCCTT
TTCTTTGCTCAAATCCACCCTTCTCAGGGAGCATTGTTACAGGCCGCGAT
AATGGCAGAGGCTGGCGCAGTAGGAAGGAGCAACCGTGAGTACTTAAGGG
ATAGCTGGAACTGGCTGGATGTGCCGGCTATTTTCCTTCTCTCTGCTGGG
TTTGTGGTTCGCATTTGGACCACTTTGAGTGGAAACGACACAGAGCAAGT
TGGCGAAGCCTGCTACCTCCTGGGGGCACCGCTCTTGTTTCCTCGCATCC
TTTTCTTTGCTCAAATCCACCCTTCTCAGGGAGCATTGTTACAGTTTTCG
ATTATCATGATTGTCGTCATGATGGGATTCGTGGTGTCATTTTGGGCTAG
CAGCGAGCGCTACCGCATTGTGAATGAAGATGAGTCCGCGACCTTCGATC
TCATGTGGGTGGCTGTTTTCAAAGCCATGCTCGGCGATTTCGGCGACGTG
GAATCCTTGACTGAAGAGCCCGACTGGGTTGACAGACTGTTGTTCGTCTT
TTACCTGATCGTCATGACCATCATGCTGCTGAACCTGCTCATTGCAATCT
TGAGCACAGCACATGCAAATATCGAGGAACGCGCAGAGACTGAAATCAAG
GCCTCGAAGGTGCGTACAATGGAGCACTATCGACGGGTTGTGGTGAACAA
CGTGCTCCCTGCACCGCTCAATTTACTTCAGCTTCTTGCGTTGTTCCCGA
TCCTAGTGATTGATCTATGCATTCACCGCGGGCTGTACGACCGCCTTAAG
CCAACAATCGCGAGGATTATGGGGAGTTTTGTTTTCTGGGCAACATTGAG
TCCCGTTGCGATTGCGTTGAGTTCCTTACTGTGGTTCGTATCAACACCGA
CTATTATAATCAGCAGATGGGATCAAAATGCATCGCTCTGGGGCAACGTC
TCTCGCAGTGTTGCAGCCGTGTTTGAGAGTTTGATTGCTGTTCCCTTGAC
ATTATTTTGGTTGTGGGCGTTGGGTGTGGTAAATGGGGCACGCCAGATTG
TTGACCTAGCTCAAGGTAGGCGGCTTGAGATACCAACGTCAGTCTCCTTT
TTATCGAATATGCCCCAAGTTCCAACAACTGTTGGAGAAATCCTAATGAC
AGAGGGTCGGCTCAGCGTACATGAGCTATCGGCATGTCTTGAAGATCCGA
TGAGCGACCCAGAGGTGCGACGAGACGAAGAAAATCGACCTACGACAGTG
CAACACATCAAGCTACTCAGGAATCGTCTTGAAGCAACACGTGCTGACCA
CCTGGTAGATATAATGGCTCACATTGAAAGTGCCGCCAACGCGAGGGAGG
GGCGACTGGAGAATATAATGTCAGCGGCAATCGCAAGCGCTGTTAACGAG
AGAGTTGACGCGCTGGAAAAATGCACACAAAACAAGCTTGATGACATTCT
CATGAAGCTCAAGACTTTGTGATTTTCGATTATCATGATTGTCGTCATGA
TGGGATTCGTGGTGTCATTTTGGGCTAGCAGCGAGCGCTACCGCATTGTG
AATGAAGATGAGTCCGCGACCTTCGATCTCATGTGGGTGGCTGTTTTCAA
AGCCATGCTCGGCGATTTCGGCGACGTGGAATCCTTGACTGAAGAGCCCG
ACTGGGTTGACAGACTGTTGTTCGTCTTTTACCTGATCGTCATGACCATC
ATGCTGCTGAACCTGCTCATTGCAATCTTGAGCACAGCACATGCAAATAT
CGAGGAACGCGCAGAGACTGAAATCAAGGCCTCGAAGGTGCGTACAATGG
AGCACTATCGACGGGTTGTGGTGAACAACGTGCTCCCTGCACCGCTCAAT
TTACTTCAGCTTCTTGCGTTGTTCCCGATCCTAGTGATTGATCTATGCAT
TCACCGCGGGCTGTACGACCGCCTTAAGCCAACAATCGCGAGGATTATGG
GGAGTTTTGTTTTCTGGGCAACATTGAGTCCCGTTGCGATTGCGTTGAGT
TCCTTACTGTGGTTCGTATCAACACCGACTATTATAATCAGCAGATGGGA
TCAAAATGCATCGCTCTGGGGCAACGTCTCTCGCAGTGTTGCAGCCGTGT
TTGAGAGTTTGATTGCTGTTCCCTTGACATTATTTTGGTTGTGGGCGTTG
GGTGTGGTAAATGGGGCACGCCAGATTGTTGACCTAGCTCAAGGTAGGCG
GCTTGAGATACCAACGTCAGTCTCCTTTTTATCGAATATGCCCCAAGTTC
CAACAACTGTTGGAGAAATCCTAATGACAGAGGGTCGGCTCAGCGTACAT
GAGCTATCGGCATGTCTTGAAGATCCGATGAGCGACCCAGAGGTGCGACG
AGACGAAGAAAATCGACCTACGACAGTGCAACACATCAAGCTACTCAGGA
ATCGTCTTGAAGCAACACGTGCTGACCACCTGGTAGATATAATGGCTCAC
ATTGAAAGTGCCGCCAACGCGAGGGAGGGGCGACTGGAGAATATAATGTC
AGCGGCAATCGCAAGCGCTGTTAACGAGAGAGTTGACGCGCTGGAAAAAT
GCACACAAAACAAGCTTGATGACATTCTCATGAAGCTCAAGACTTTGTGA
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