mRNA_H-elongata_contig10883.716.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: D8LS16_ECTSI (Hypothetical conserved protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS16_ECTSI) HSP 1 Score: 169 bits (427), Expect = 7.480e-49 Identity = 72/88 (81.82%), Postives = 80/88 (90.91%), Query Frame = 1
Query: 1 KVTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRFD 264
KVTK+P+E++I ALGARSWPTWGCGVSKFPWTYEGTETCLILEG+ TVTPDDDR+ VG GDLCVFPDGM CTWDVR PVKKHY+F+
Sbjct: 62 KVTKDPSEEEIKALGARSWPTWGCGVSKFPWTYEGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMSCTWDVRAPVKKHYKFE 149
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A7S0WR75_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WR75_9CHLO) HSP 1 Score: 135 bits (339), Expect = 5.530e-36 Identity = 59/86 (68.60%), Postives = 66/86 (76.74%), Query Frame = 1
Query: 4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
VT+ P EDK+ ALG RSWPTWGCGVSKFPWTY+ TET +LEGE TVTP+ EP + GDLCVFP GM CTWDVR P+ KHY F
Sbjct: 41 VTRTPPEDKLKALGVRSWPTWGCGVSKFPWTYQETETAYLLEGEVTVTPNG-GEPVEIRAGDLCVFPAGMSCTWDVRKPINKHYDF 125
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: Q60B25_METCA (Cupin_3 domain-containing protein n=5 Tax=Methylococcus TaxID=413 RepID=Q60B25_METCA) HSP 1 Score: 127 bits (318), Expect = 2.600e-33 Identity = 55/87 (63.22%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 1 KVTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
K+ NP E ++ LG R WPTW CGVS FPWTY+ +ETC ILEGE TVTP EP +G GDL FP GM CTWDV VPVKKHY F
Sbjct: 5 KIENNPPETRLGELGVRRWPTWSCGVSSFPWTYDESETCYILEGEVTVTPQG-GEPVRIGKGDLVTFPPGMSCTWDVHVPVKKHYTF 90
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A7S2UX72_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX72_9STRA) HSP 1 Score: 128 bits (322), Expect = 2.770e-33 Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
V +NP ++K+ +G WP WGCGVS FPWTYEGTETC I+ GE TVTP D R P TVG GDL FP+ M CTWDV P+ KH+ F
Sbjct: 53 VERNPTQEKLEKMGVFDWPKWGCGVSNFPWTYEGTETCYIVSGEVTVTPSDGRAPVTVGEGDLVTFPNRMSCTWDVTKPIDKHFNF 138
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A3M1FR86_9BACT (DUF861 domain-containing protein n=2 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A3M1FR86_9BACT) HSP 1 Score: 124 bits (312), Expect = 3.260e-32 Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
+ NP+ +K++ LG +WPTW C VS FPWTYE TETC ILEG TVTPD EP T+G GDL FP G+ CTW+V P++KHYRF
Sbjct: 6 IEHNPSREKLAELGVENWPTWSCEVSTFPWTYEDTETCYILEGRVTVTPDG-GEPVTIGKGDLVTFPKGLSCTWEVHAPIRKHYRF 90
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A0A0KVZ0_CUCSA (Cupin_3 domain-containing protein n=3 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0KVZ0_CUCSA) HSP 1 Score: 125 bits (314), Expect = 4.140e-32 Identity = 53/88 (60.23%), Postives = 61/88 (69.32%), Query Frame = 1
Query: 1 KVTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRFD 264
KV KNP+E K++ LG R WP WGCG SKFPWTY ETC +LEG+ VTP E +G GDL VFP GM CTWDV V V KHY+F+
Sbjct: 51 KVEKNPSESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSNESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYKFE 138
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A150FWA4_GONPE (Cupin_3 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FWA4_GONPE) HSP 1 Score: 123 bits (309), Expect = 1.150e-31 Identity = 53/86 (61.63%), Postives = 59/86 (68.60%), Query Frame = 1
Query: 4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
V + P ED + A G RSWPTWGCGVSKFPWTY+ ETC ILEG VTP+ EP V GDL FP GM CTWDV+ P+ KHY F
Sbjct: 30 VQRQPGEDVLKAKGVRSWPTWGCGVSKFPWTYQEPETCFILEGRVVVTPNG-GEPVEVAAGDLATFPAGMSCTWDVKAPINKHYNF 114
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A8J4LY75_9CHLO (Cupin_3 domain-containing protein n=4 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LY75_9CHLO) HSP 1 Score: 123 bits (309), Expect = 1.300e-31 Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 1
Query: 4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
V + P ED I A G RSWPTWGCGVSKFPWTY+ ETC ILEG+ VTPD E + GDL +FP GM C WDV+ P+ KHY F
Sbjct: 33 VHRQPAEDVIKAKGVRSWPTWGCGVSKFPWTYKENETCYILEGKVVVTPDAGGEAVEINAGDLAIFPAGMSCIWDVKAPIDKHYNF 118
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A2K3E5N5_CHLRE (Cupin_3 domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E5N5_CHLRE) HSP 1 Score: 123 bits (308), Expect = 1.400e-31 Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
V +NP ED + A G RSWPTWGCGVSKFPWTY+ ETC +LEG+ VTP+ EP + GD+ FP GM CTWDV+ P+ KHY F
Sbjct: 25 VQRNPAEDVLKAKGVRSWPTWGCGVSKFPWTYQENETCYVLEGDVIVTPNG-GEPVQIKAGDMATFPAGMSCTWDVKAPINKHYNF 109
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A564ZJX5_9BACT (Cupin_3 domain-containing protein n=1 Tax=Candidatus Methylomirabilis lanthanidiphila TaxID=2211376 RepID=A0A564ZJX5_9BACT) HSP 1 Score: 122 bits (306), Expect = 1.540e-31 Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 1
Query: 1 KVTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRFD 264
++ +NP++++++AL +WPTW VS FPW+Y+ TETC LEGE V PDD EPA VG GDL VFP GM CTWD+R PVKKHYRFD
Sbjct: 4 RIERNPSQERLAALKITTWPTWSKEVSIFPWSYDSTETCYFLEGEVVVMPDD-GEPAQVGKGDLVVFPVGMTCTWDIRRPVKKHYRFD 90 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10883.716.1 >prot_H-elongata_contig10883.716.1 ID=prot_H-elongata_contig10883.716.1|Name=mRNA_H-elongata_contig10883.716.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp KVTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPback to top mRNA from alignment at H-elongata_contig10883:2052..3446- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10883.716.1 ID=mRNA_H-elongata_contig10883.716.1|Name=mRNA_H-elongata_contig10883.716.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1395bp|location=Sequence derived from alignment at H-elongata_contig10883:2052..3446- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10883:2052..3446- >mRNA_H-elongata_contig10883.716.1 ID=mRNA_H-elongata_contig10883.716.1|Name=mRNA_H-elongata_contig10883.716.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig10883:2052..3446- (Himanthalia elongata Himel1 dioecious)back to top |