mRNA_H-elongata_contig108428.688.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108428.688.1
Unique NamemRNA_H-elongata_contig108428.688.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108428.688.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 3.830e-59
Identity = 135/300 (45.00%), Postives = 180/300 (60.00%), Query Frame = 1 
Query:   10 KQEVNLAKQTKEVWIKVQLPDSSSAGGGGKAGSVIFIEGWIMAFATKRGATMTEAPDALAAQARFRQQEEATRVLATSGGPAGPSSKEAAPPEKAVKPAAPAPAPSSSLADIGGYLRAVGTLKLREEADSFSIELGTIAAGKLVRVVEASGLWIRVLWQGSSEGWVLTANKRGPLLLPTEGSPADTEQEFNDQEAAASGAGDGISTGDDVTGDEDRPLTGAKPGSLAPS---AQEAAGAVDVRKSMEKTASTSSLPPPPATEKSGKDSAAAVGQFMTSAGPLKIRDEADPYSMDVGTMAK 900
            K+E+N AKQTK+VW++ Q P++++A G  + G    +EGW++AF+TKRG+ + EAP+ALAAQ  F +QE                                   P++  A +GGY+RA G LKLREEADS S+ELGT++ G+LVRV + SGLW+RVL++G S GWVLTANKRG  L P E  PA   +EF  QEA             +  GDEDRPLTGAK GS A S   + ++    +V ++              A   SGK +AA+VGQF+TSAGPLK+R+EADP+S+DV TM K
Sbjct:  397 KEEINEAKQTKDVWVRGQSPNTAAAAGS-RTG---LVEGWLLAFSTKRGSMVAEAPNALAAQHAFEKQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPTT--ASVGGYMRAAGQLKLREEADSLSLELGTVSRGELVRVEQTSGLWVRVLYRGDSSGWVLTANKRGASLTPAEAGPAAAAKEFQAQEAXXXXXXXXXXX--NGAGDEDRPLTGAKAGSKAGSTAVSDDSGSRAEVARARSAXXXXXXXXXXXAAGSSGKGNAASVGQFLTSAGPLKVREEADPFSLDVATMEK 688
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BLAST of mRNA_H-elongata_contig108428.688.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.440e-36
Identity = 90/190 (47.37%), Postives = 111/190 (58.42%), Query Frame = 1 
Query:  331 SLADIGGYLRAVGTLKLREEADSFSIELGTIAAGKLVRVVEASGLWIRVLWQGSSEGWVLTANKRGPLLLPTEGSPADTEQEFNDQEAAASGAGDGISTGDDVTGDEDRPLTGAKPGSLAPSAQEAAGAVDVRKSMEKTASTSSLPPPPATEKSGKDSAAAVGQFMTSAGPLKIRDEADPYSMDVGTMAK 900
            + A +GGY+RA G LKLREEADS S+ELGT++ G+LV+V + SGLW+RVL++G S GWVLTANKRG  L P E   A   +EF                         RPLTGA+ GS A S                       PP  A   SGK +AA+VGQFMTSAGPLK+R++ADP+S+DV TM K
Sbjct:   59 TTASVGGYMRAAGQLKLREEADSLSLELGTVSRGQLVKVEQTSGLWVRVLYRGDSSGWVLTANKRGASLTPAETGSAAAAKEFQ-AXXXXXXXXXXXXXXXXXXXXXXRPLTGARAGSTAVSXXXXXXXXXXXXXXXXXXXXXXXPPV-AAGSSGKGNAASVGQFMTSAGPLKVREDADPFSLDVATMEK 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108428.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7L6_ECTSI3.830e-5945.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4T0_9PHAE3.440e-3647.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108428contigH-elongata_contig108428:338..2218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size904
Cds size903
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108428.688.1prot_H-elongata_contig108428.688.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108428 338..2218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.2492642-CDS-H-elongata_contig108428:337..5501622929613.2492642-CDS-H-elongata_contig108428:337..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108428 338..550 +
1691679091.375831-CDS-H-elongata_contig108428:337..5501691679091.375831-CDS-H-elongata_contig108428:337..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108428 338..550 +
1622929613.26143-CDS-H-elongata_contig108428:940..11801622929613.26143-CDS-H-elongata_contig108428:940..1180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108428 941..1180 +
1691679091.388433-CDS-H-elongata_contig108428:940..11801691679091.388433-CDS-H-elongata_contig108428:940..1180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108428 941..1180 +
1622929613.2768312-CDS-H-elongata_contig108428:1590..19761622929613.2768312-CDS-H-elongata_contig108428:1590..1976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108428 1591..1976 +
1691679091.3979888-CDS-H-elongata_contig108428:1590..19761691679091.3979888-CDS-H-elongata_contig108428:1590..1976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108428 1591..1976 +
1622929613.2911773-CDS-H-elongata_contig108428:2154..22181622929613.2911773-CDS-H-elongata_contig108428:2154..2218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108428 2155..2218 +
1691679091.4102333-CDS-H-elongata_contig108428:2154..22181691679091.4102333-CDS-H-elongata_contig108428:2154..2218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108428 2155..2218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108428.688.1

>prot_H-elongata_contig108428.688.1 ID=prot_H-elongata_contig108428.688.1|Name=mRNA_H-elongata_contig108428.688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp
MGAKQEVNLAKQTKEVWIKVQLPDSSSAGGGGKAGSVIFIEGWIMAFATK
RGATMTEAPDALAAQARFRQQEEATRVLATSGGPAGPSSKEAAPPEKAVK
PAAPAPAPSSSLADIGGYLRAVGTLKLREEADSFSIELGTIAAGKLVRVV
EASGLWIRVLWQGSSEGWVLTANKRGPLLLPTEGSPADTEQEFNDQEAAA
SGAGDGISTGDDVTGDEDRPLTGAKPGSLAPSAQEAAGAVDVRKSMEKTA
STSSLPPPPATEKSGKDSAAAVGQFMTSAGPLKIRDEADPYSMDVGTMAK
E
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mRNA from alignment at H-elongata_contig108428:338..2218+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108428.688.1 ID=mRNA_H-elongata_contig108428.688.1|Name=mRNA_H-elongata_contig108428.688.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1881bp|location=Sequence derived from alignment at H-elongata_contig108428:338..2218+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGCCAAGCAGGAGGTCAACCTGGCAAAGCAGACTAAAGAAGTCTG
GATAAAGGTCCAGTTGCCGGACTCGAGCTCCGCTGGCGGTGGTGGCAAGG
CGGGAAGCGTGATTTTCATCGAAGGTTGGATCATGGCATTTGCCACCAAG
CGAGGGGCCACGATGACCGAAGCCCCTGATGCGCTAGCGGCTCAGGCCAG
ATTCCGGCAGCAGGTGTGCGATGAGAGTCCAAGGGCGTGCACGGATGGAA
CCCGAAATGTACCTTTCGAGTGCCTTGTTGTTACAGGCGTGTGCTTCGCT
CGGTCGTCATCCACCCAAGGGGAGAGACGCTTTTGCTTAAAAGGGAGGGG
GCGCGAGAAAAACAGCTGGAAAATGTTTTAAATCCAAGCAAACTTTTTTT
TTTTTTTTTTTTTTTAAATCCAACAAGCTAAGTGTTGTCTACAATCGAAG
CCATGTGTTGTTTACTCTCCCCAAGTGTTGTCGTACGACTATAAATTGAG
GGAAGGCAATGGTTTGTTTTTAACATGTGTTCTTTTCTGTTAATCTCGAC
CATGAACGTCGGACGGTAACGTCCTATTCATCTAAACATCGTTCGGGTGA
TAGGAAGAAGCGACTCGAGTTTTGGCCACCTCTGGCGGTCCCGCTGGCCC
ATCGTCAAAGGAAGCAGCCCCTCCCGAGAAAGCGGTTAAGCCTGCAGCAC
CCGCACCAGCACCATCGTCATCATTAGCAGATATCGGTGGTTACTTAAGG
GCGGTGGGGACGCTCAAGCTCCGGGAGGAGGCCGACTCGTTCTCGATAGA
ACTTGGCACCATTGCCGCGGGCAAGCTCGTCAGAGTCGTTGAGGCGAGAA
CGCGATGGATTGCTTCCTCGAAAATATTTTGGCTAAAACCATTGTTATCT
CTCGATTTTGTCTTCCTGCTATATATATATATATATATAATCATTCTCTA
GCACCATGCTATGATCGTGTGTGGTCGGCCACTCTTTTCCCTCGTGCTGC
CTACCGGGTTGTGGGTATCTATCTTACTGGCGGATAGAGAAATGGCGTGT
AGGGCTTTTTAATATACCCCGGTTTTTTATTTTGAAATATTTCTTCGCCT
CATAAAGGCTGTAGTATTCGTGGCACCACATCCTCCCGTCATTGCTTGCT
CTCTTCGTGAAAATTATAATTTGTAACGCTTTCTACTACACACTCCGGAA
TCTGTTTTCCCGTGTAATTGTTTTTCCCTATTGCTGCTTTGTTTTTTTTG
AAGGCTTCTGGTCTGTGGATTCGTGTGCTGTGGCAAGGCAGTAGCGAAGG
ATGGGTGCTGACCGCGAACAAGCGAGGGCCTCTCCTGTTGCCGACCGAGG
GAAGCCCCGCCGATACGGAGCAGGAGTTTAATGATCAAGAGGCGGCCGCA
TCCGGAGCGGGTGACGGTATATCCACGGGTGATGACGTCACAGGGGACGA
AGATCGGCCGCTGACCGGCGCGAAGCCTGGTTCGCTGGCTCCATCTGCAC
AGGAGGCGGCGGGAGCAGTAGACGTCAGGAAGAGTATGGAGAAGACGGCG
TCAACGTCGTCGTTGCCCCCGCCCCCCGCCACAGAAAAATCTGGGAAAGA
TTCTGCCGCAGCGGTGGGGCAGTTCATGACATCAGCCGGGTAAGCTCCGA
GGGATATGTCTTTTCATCATGGAGAGGCGTTAATTATACCCGATAGTGCG
TCATGGGTCCCATTTGGGTTTTAATCGACGAGGCGTTTTGTCGTAAAATC
TCTCTATTCTATGCCGGAGTATATTCATGCTTTTGGGTTTTGCTTGTTTT
TTTTCTTGGCTGACCAGGCCTCTCAAGATCCGCGACGAGGCGGACCCGTA
CTCCATGGACGTGGGCACCATGGCAAAAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig108428:338..2218+

>mRNA_H-elongata_contig108428.688.1 ID=mRNA_H-elongata_contig108428.688.1|Name=mRNA_H-elongata_contig108428.688.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at H-elongata_contig108428:338..2218+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGCCAAGCAGGAGGTCAACCTGGCAAAGCAGACTAAAGAAGTCTG
GATAAAGGTCCAGTTGCCGGACTCGAGCTCCGCTGGCGGTGGTGGCAAGG
CGGGAAGCGTGATTTTCATCGAAGGTTGGATCATGGCATTTGCCACCAAG
CGAGGGGCCACGATGACCGAAGCCCCTGATGCGCTAGCGGCTCAGGCCAG
ATTCCGGCAGCAGATGGGGGCCAAGCAGGAGGTCAACCTGGCAAAGCAGA
CTAAAGAAGTCTGGATAAAGGTCCAGTTGCCGGACTCGAGCTCCGCTGGC
GGTGGTGGCAAGGCGGGAAGCGTGATTTTCATCGAAGGTTGGATCATGGC
ATTTGCCACCAAGCGAGGGGCCACGATGACCGAAGCCCCTGATGCGCTAG
CGGCTCAGGCCAGATTCCGGCAGCAGGAAGAAGCGACTCGAGTTTTGGCC
ACCTCTGGCGGTCCCGCTGGCCCATCGTCAAAGGAAGCAGCCCCTCCCGA
GAAAGCGGTTAAGCCTGCAGCACCCGCACCAGCACCATCGTCATCATTAG
CAGATATCGGTGGTTACTTAAGGGCGGTGGGGACGCTCAAGCTCCGGGAG
GAGGCCGACTCGTTCTCGATAGAACTTGGCACCATTGCCGCGGGCAAGCT
CGTCAGAGTCGTTGAGGAAGAAGCGACTCGAGTTTTGGCCACCTCTGGCG
GTCCCGCTGGCCCATCGTCAAAGGAAGCAGCCCCTCCCGAGAAAGCGGTT
AAGCCTGCAGCACCCGCACCAGCACCATCGTCATCATTAGCAGATATCGG
TGGTTACTTAAGGGCGGTGGGGACGCTCAAGCTCCGGGAGGAGGCCGACT
CGTTCTCGATAGAACTTGGCACCATTGCCGCGGGCAAGCTCGTCAGAGTC
GTTGAGGCTTCTGGTCTGTGGATTCGTGTGCTGTGGCAAGGCAGTAGCGA
AGGATGGGTGCTGACCGCGAACAAGCGAGGGCCTCTCCTGTTGCCGACCG
AGGGAAGCCCCGCCGATACGGAGCAGGAGTTTAATGATCAAGAGGCGGCC
GCATCCGGAGCGGGTGACGGTATATCCACGGGTGATGACGTCACAGGGGA
CGAAGATCGGCCGCTGACCGGCGCGAAGCCTGGTTCGCTGGCTCCATCTG
CACAGGAGGCGGCGGGAGCAGTAGACGTCAGGAAGAGTATGGAGAAGACG
GCGTCAACGTCGTCGTTGCCCCCGCCCCCCGCCACAGAAAAATCTGGGAA
AGATTCTGCCGCAGCGGTGGGGCAGTTCATGACATCAGCCGGGCTTCTGG
TCTGTGGATTCGTGTGCTGTGGCAAGGCAGTAGCGAAGGATGGGTGCTGA
CCGCGAACAAGCGAGGGCCTCTCCTGTTGCCGACCGAGGGAAGCCCCGCC
GATACGGAGCAGGAGTTTAATGATCAAGAGGCGGCCGCATCCGGAGCGGG
TGACGGTATATCCACGGGTGATGACGTCACAGGGGACGAAGATCGGCCGC
TGACCGGCGCGAAGCCTGGTTCGCTGGCTCCATCTGCACAGGAGGCGGCG
GGAGCAGTAGACGTCAGGAAGAGTATGGAGAAGACGGCGTCAACGTCGTC
GTTGCCCCCGCCCCCCGCCACAGAAAAATCTGGGAAAGATTCTGCCGCAG
CGGTGGGGCAGTTCATGACATCAGCCGGGCCTCTCAAGATCCGCGACGAG
GCGGACCCGTACTCCATGGACGTGGGCACCATGGCAAAAGAAGCCTCTCA
AGATCCGCGACGAGGCGGACCCGTACTCCATGGACGTGGGCACCATGGCA
AAAGAA
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