mRNA_H-elongata_contig108135.663.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Match: D8LC24_ECTSI (Eukaryotic translation initiation factor 2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC24_ECTSI) HSP 1 Score: 204 bits (519), Expect = 1.690e-60 Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 1
Query: 1 GFGNLAGEMDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVAKREINVLYDAVWRPALPNVYPDRPASPGRKGSAIADAAAGVG 327
G GNLAGEMDFWDVNRKK+MGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPV K+E+ VL+DAVW+PA VYPDRPASPGRKG ADAAAG G
Sbjct: 359 GLGNLAGEMDFWDVNRKKVMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVVKKEVEVLWDAVWQPAAQGVYPDRPASPGRKGPTAADAAAGRG 467
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Match: A0A836C9Y7_9STRA (Eukaryotic translation initiation factor 2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Y7_9STRA) HSP 1 Score: 164 bits (414), Expect = 2.210e-45 Identity = 75/107 (70.09%), Postives = 84/107 (78.50%), Query Frame = 1
Query: 1 GFGNLAGEMDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVAKREINVLYDAVWRPALPNVYPDRPASPGRKGSAIADAAAG 321
GFGNLAGEMDFWD R K++GS +SHCAV YGWSPDSR+F+TATCAPRMNVDN V VF+Y+GSGPV R ++ LYDA WRPA Y DR ASPGRKG AAAG
Sbjct: 371 GFGNLAGEMDFWDTRRSKLLGSAASHCAVKYGWSPDSRYFMTATCAPRMNVDNGVHVFKYNGSGPVYSRAVDTLYDACWRPAAEGTYQDRAASPGRKGPDSKKAAAG 477
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Match: A0A7S2W6Z7_9STRA (Eukaryotic translation initiation factor 2A n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6Z7_9STRA) HSP 1 Score: 155 bits (393), Expect = 7.050e-43 Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 1
Query: 1 GFGNLAGEMDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVAKREINVLYDAVWRPALPNVYPDRPASPGR------KGSAIADAAA 318
GFGNLAG+MDFWDVN++K MGS ++HCAV +GWSPDSR+F+TAT APRMNVDN VK+FRY+G+GP+ + L+DA WRPALP VYPDRP SP R KGS A AAA
Sbjct: 232 GFGNLAGDMDFWDVNKQKKMGSNTAHCAVGFGWSPDSRFFMTATLAPRMNVDNGVKIFRYNGAGPIFELPQTQLFDAKWRPALPGVYPDRPQSPTRRNENQGKGSQAAAAAA 343
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Match: A0A7S2W6T5_9STRA (Eukaryotic translation initiation factor 2A n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6T5_9STRA) HSP 1 Score: 155 bits (393), Expect = 2.930e-42 Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 1
Query: 1 GFGNLAGEMDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVAKREINVLYDAVWRPALPNVYPDRPASPGR------KGSAIADAAA 318
GFGNLAG+MDFWDVN++K MGS ++HCAV +GWSPDSR+F+TAT APRMNVDN VK+FRY+G+GP+ + L+DA WRPALP VYPDRP SP R KGS A AAA
Sbjct: 364 GFGNLAGDMDFWDVNKQKKMGSNTAHCAVGFGWSPDSRFFMTATLAPRMNVDNGVKIFRYNGAGPIFELPQTQLFDAKWRPALPGVYPDRPQSPTRRNENQGKGSQAAAAAA 475
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Match: A0A7S2Y000_9STRA (Eukaryotic translation initiation factor 2A (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y000_9STRA) HSP 1 Score: 142 bits (357), Expect = 3.460e-39 Identity = 61/107 (57.01%), Postives = 81/107 (75.70%), Query Frame = 1
Query: 1 GFGNLAGEMDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVAKREINVLYDAVWRPALPNVYPDRPASPGRKGSAIADAAAG 321
GFGNLAG+MDFWD+N+KK+MG+ + HCAV +GW+PDSR+F+ +T PRMNVDN +K+F+Y+G GPV ++ + L+ A W PA VYPDRP SP KG +A AG
Sbjct: 178 GFGNLAGDMDFWDINKKKMMGTNTCHCAVGFGWAPDSRYFMASTLTPRMNVDNGIKIFKYNGIGPVIEKAEDQLFQADWVPAAAGVYPDRPQSPRPKGEKAEEANAG 284
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Match: W7TR14_9STRA (Eukaryotic translation initiation factor 2A n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR14_9STRA) HSP 1 Score: 141 bits (355), Expect = 5.760e-37 Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query: 1 GFGNLAGEMDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVAKREIN--VLYDAVWRPALPNVYPDRPASPGRKG 294
GFGNLAGEMDFWD N++K+MG +SHC+V YGWSP R+F+TAT APRMNVDN VK+F+Y+G+GP+ K E L+DA +RPA V+PDRPA+P RKG
Sbjct: 373 GFGNLAGEMDFWDRNKQKLMGRNTSHCSVGYGWSPCGRYFMTATLAPRMNVDNAVKLFKYNGAGPLHKAEFEDATLFDASFRPAAGGVFPDRPATPPRKG 472
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Match: A0A8K1CP96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP96_PYTOL) HSP 1 Score: 133 bits (335), Expect = 3.200e-34 Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = 1
Query: 1 GFGNLAGEMDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVAKREINVLYDAVWRPALPNVYPDRPASPGRKGSAIADAA 315
GFGNL G+MDFWD N+ K MGS +S+ A + WSPDSR+F TAT PR+ VDN KVF+YDG+GP+ + + LYD +RPALP+VYP+RP SP +KG A AA
Sbjct: 347 GFGNLRGDMDFWDRNKLKKMGSANSNSATCFAWSPDSRYFFTATTFPRLRVDNGFKVFKYDGTGPIYQEDRGELYDMKFRPALPDVYPNRPQSPRKKGEEAASAA 451
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Match: A0A2D4BSZ9_PYTIN (Eukaryotic translation initiation factor 2A n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSZ9_PYTIN) HSP 1 Score: 133 bits (334), Expect = 3.580e-34 Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = 1
Query: 1 GFGNLAGEMDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVAKREINVLYDAVWRPALPNVYPDRPASPGRKGSAIA 306
GFGNL G+MDFWD N+ K MGS +S+ A + WSPDSR+F+TAT PR+ VDN KVFRYDG+GP+ + + LYD +RPALP+VYP+RP SP RKG A
Sbjct: 340 GFGNLRGDMDFWDRNKLKKMGSANSNSATTFTWSPDSRYFVTATTFPRLRVDNGFKVFRYDGTGPIHQEDRGELYDLKFRPALPDVYPNRPQSPRRKGEEAA 441
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Match: A0A6G0X7T5_9STRA (Eukaryotic translation initiation factor 2A n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7T5_9STRA) HSP 1 Score: 130 bits (326), Expect = 4.990e-33 Identity = 62/106 (58.49%), Postives = 72/106 (67.92%), Query Frame = 1
Query: 1 GFGNLAGEMDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVAKREINVLYDAVWRPALPNVYPDRPASPGRKGSAIADAAA 318
GFGNL G MDFWD N+ K +GST S CA YGWSPDSR+F TAT PR+ VDN K+F+YDG+GPV LYD +RPA VYP+RPASP K + AAA
Sbjct: 348 GFGNLPGNMDFWDRNKLKKLGSTKSECATCYGWSPDSRYFATATTHPRVRVDNGFKIFKYDGTGPVVSEARPELYDLQFRPAATGVYPNRPASPRSKDAEAVAAAA 453
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Match: A0A3R7JX70_9STRA (Eukaryotic translation initiation factor 2A n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JX70_9STRA) HSP 1 Score: 129 bits (323), Expect = 2.120e-32 Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1
Query: 1 GFGNLAGEMDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFRYDGSGPVAKREINVLYDAVWRPALPNVYPDRPASPGRKG 294
GFGNL G+MDFW+ N+ K MGS +S+ A + WSPDSR+F TAT PR+ VDN KVFRYDG+GP+ + E LYD +RPA P+ YP+RP SP RKG
Sbjct: 627 GFGNLRGDMDFWERNKLKKMGSATSNSATTFAWSPDSRYFATATTFPRLRVDNGFKVFRYDGAGPIHQEERGELYDLQFRPAAPDTYPNRPQSPRRKG 724 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108135.663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig108135.663.1 >prot_H-elongata_contig108135.663.1 ID=prot_H-elongata_contig108135.663.1|Name=mRNA_H-elongata_contig108135.663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp MDFWDVNRKKIMGSTSSHCAVAYGWSPDSRWFLTATCAPRMNVDNDVKVFback to top mRNA from alignment at H-elongata_contig108135:163..2037+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig108135.663.1 ID=mRNA_H-elongata_contig108135.663.1|Name=mRNA_H-elongata_contig108135.663.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1875bp|location=Sequence derived from alignment at H-elongata_contig108135:163..2037+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig108135:163..2037+ >mRNA_H-elongata_contig108135.663.1 ID=mRNA_H-elongata_contig108135.663.1|Name=mRNA_H-elongata_contig108135.663.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig108135:163..2037+ (Himanthalia elongata Himel1 dioecious)back to top |